RNA–Protein interactions for RNA: ENST00000473916.1

VARS2-206, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 2,000 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-206ENST00000473916 NISCHQ9Y2I1 1504 aa40.41■■■■■ 4.06
VARS2-206ENST00000473916 CCDC180Q9P1Z9 1646 aa35.06■■■■□ 3.2
VARS2-206ENST00000473916 ZCCHC6Q5VYS8 1495 aaKnown RBP33.99■■■■□ 3.03
VARS2-206ENST00000473916 DCAF8L2P0C7V8 631 aa33.46■■■□□ 2.95
VARS2-206ENST00000473916 SHROOM4Q9ULL8 1493 aa33.37■■■□□ 2.93
VARS2-206ENST00000473916 DCAF1Q9Y4B6 1507 aa33.27■■■□□ 2.92
VARS2-206ENST00000473916 ABCC9O60706 1549 aa33.17■■■□□ 2.9
VARS2-206ENST00000473916 MYO15BQ96JP2 1530 aa32.74■■■□□ 2.83
VARS2-206ENST00000473916 NACADO15069 1562 aa32.58■■■□□ 2.81
VARS2-206ENST00000473916 SCRIBQ14160 1630 aa32.49■■■□□ 2.79
VARS2-206ENST00000473916 RB1CC1Q8TDY2 1594 aa32.29■■■□□ 2.76
VARS2-206ENST00000473916 SUPT5HO00267 1087 aaKnown RBP32.14■■■□□ 2.74
VARS2-206ENST00000473916 UNC13AQ9UPW8 1703 aa31.87■■■□□ 2.69
VARS2-206ENST00000473916 CECR2Q9BXF3 1484 aa31.52■■■□□ 2.64
VARS2-206ENST00000473916 RSF1Q96T23 1441 aaPredicted RBP31.47■■■□□ 2.63
VARS2-206ENST00000473916 BICRAQ9NZM4 1560 aa31.45■■■□□ 2.62
VARS2-206ENST00000473916 PABPN1Q86U42 306 aaKnown RBP eCLIP31.37■■■□□ 2.612e-7■■■■■ 29.9
VARS2-206ENST00000473916 MROH2BQ7Z745 1585 aa31.33■■■□□ 2.61
VARS2-206ENST00000473916 BAZ1AQ9NRL2 1556 aaPredicted RBP31.14■■■□□ 2.58
VARS2-206ENST00000473916 WIZO95785 1651 aa31.13■■■□□ 2.57
VARS2-206ENST00000473916 SMARCA4P51532 1647 aa31.05■■■□□ 2.56
VARS2-206ENST00000473916 CHIC1Q5VXU3 224 aa30.8■■■□□ 2.52
VARS2-206ENST00000473916 TOP2AP11388 1531 aaKnown RBP30.67■■■□□ 2.5
VARS2-206ENST00000473916 PEG3Q9GZU2 1588 aa30.57■■■□□ 2.48
VARS2-206ENST00000473916 ATAD2BQ9ULI0 1458 aa30.47■■■□□ 2.47
VARS2-206ENST00000473916 SMARCA2P51531 1590 aa30.45■■■□□ 2.47
VARS2-206ENST00000473916 EIF4G1Q04637 1599 aaKnown RBP30.44■■■□□ 2.46
VARS2-206ENST00000473916 CCDC88BA6NC98 1476 aa30.42■■■□□ 2.46
VARS2-206ENST00000473916 BAZ1BQ9UIG0 1483 aaKnown RBP30.3■■■□□ 2.44
VARS2-206ENST00000473916 NCAPD3P42695 1498 aa30.09■■■□□ 2.41
VARS2-206ENST00000473916 TRIM41Q8WV44 630 aa30.08■■■□□ 2.41
VARS2-206ENST00000473916 HMGXB3Q12766 1538 aa30.07■■■□□ 2.4
VARS2-206ENST00000473916 CC2D2AQ9P2K1 1620 aa29.98■■■□□ 2.39
VARS2-206ENST00000473916 ABCC8Q09428 1581 aa29.97■■■□□ 2.39
VARS2-206ENST00000473916 LOC105371045A0A1W2PR82 267 aa29.76■■■□□ 2.35
VARS2-206ENST00000473916 FAM9AQ8IZU1 332 aaPredicted RBP29.71■■■□□ 2.35
VARS2-206ENST00000473916 WRNQ14191 1432 aaPredicted RBP eCLIP29.59■■■□□ 2.33
VARS2-206ENST00000473916 SYNJ1O43426 1573 aa29.56■■■□□ 2.32
VARS2-206ENST00000473916 CFTRP13569 1480 aa29.53■■■□□ 2.32
VARS2-206ENST00000473916 PRDM2Q13029 1718 aa29.43■■■□□ 2.3
VARS2-206ENST00000473916 EHMT2Q96KQ7 1210 aa29.42■■■□□ 2.3
VARS2-206ENST00000473916 SOGA1O94964 1423 aa29.4■■■□□ 2.3
VARS2-206ENST00000473916 CADPSQ9ULU8 1353 aa29.37■■■□□ 2.29
VARS2-206ENST00000473916 DNAJC5BQ9UF47 199 aa29.36■■■□□ 2.29
VARS2-206ENST00000473916 RUSC2Q8N2Y8 1516 aa29.34■■■□□ 2.29
VARS2-206ENST00000473916 TOP2BQ02880 1626 aa29.32■■■□□ 2.28
VARS2-206ENST00000473916 BIVM-ERCC5R4GMW8 1640 aa29.29■■■□□ 2.28
VARS2-206ENST00000473916 CUX1P39880 1505 aa29.26■■■□□ 2.28
VARS2-206ENST00000473916 NESP48681 1621 aa29.23■■■□□ 2.27
VARS2-206ENST00000473916 EEA1Q15075 1411 aa29.13■■■□□ 2.25
VARS2-206ENST00000473916 FANCD2Q9BXW9 1451 aa29.1■■■□□ 2.25
VARS2-206ENST00000473916 CSRNP3Q8WYN3 585 aa29.08■■■□□ 2.25
VARS2-206ENST00000473916 LAMC3Q9Y6N6 1575 aa29.04■■■□□ 2.24
VARS2-206ENST00000473916 FGD5Q6ZNL6 1462 aa28.89■■■□□ 2.22
VARS2-206ENST00000473916 KIF21BO75037 1637 aa28.87■■■□□ 2.21
VARS2-206ENST00000473916 CEP164Q9UPV0 1460 aa28.87■■■□□ 2.21
VARS2-206ENST00000473916 KIF21AQ7Z4S6 1674 aa28.86■■■□□ 2.21
VARS2-206ENST00000473916 GOLGA3Q08378 1498 aa28.86■■■□□ 2.21
VARS2-206ENST00000473916 DNMBPQ6XZF7 1577 aa28.85■■■□□ 2.21
VARS2-206ENST00000473916 TOPBP1Q92547 1522 aa28.82■■■□□ 2.2
VARS2-206ENST00000473916 TNIKQ9UKE5 1360 aa28.79■■■□□ 2.2
VARS2-206ENST00000473916 PDS5BQ9NTI5 1447 aa28.79■■■□□ 2.2
VARS2-206ENST00000473916 UBTFP17480 764 aaKnown RBP28.79■■■□□ 2.2
VARS2-206ENST00000473916 URB2Q14146 1524 aaKnown RBP28.78■■■□□ 2.2
VARS2-206ENST00000473916 KIF27Q86VH2 1401 aa28.77■■■□□ 2.2
VARS2-206ENST00000473916 RAPGEF2Q9Y4G8 1499 aa28.77■■■□□ 2.2
VARS2-206ENST00000473916 CEP162Q5TB80 1403 aa28.74■■■□□ 2.19
VARS2-206ENST00000473916 CUX2O14529 1486 aa28.74■■■□□ 2.19
VARS2-206ENST00000473916 POLA1P09884 1462 aaPredicted RBP28.71■■■□□ 2.19
VARS2-206ENST00000473916 RAD54L2Q9Y4B4 1467 aa28.69■■■□□ 2.18
VARS2-206ENST00000473916 PRXQ9BXM0 1461 aa28.67■■■□□ 2.18
VARS2-206ENST00000473916 ERICH3Q5RHP9 1530 aa28.59■■■□□ 2.17
VARS2-206ENST00000473916 PCGF6Q9BYE7 350 aa28.57■■■□□ 2.16
VARS2-206ENST00000473916 ABCA10Q8WWZ4 1543 aa28.56■■■□□ 2.16
VARS2-206ENST00000473916 IGF1RP08069 1367 aa28.55■■■□□ 2.16
VARS2-206ENST00000473916 WDR97A6NE52 1622 aa28.53■■■□□ 2.16
VARS2-206ENST00000473916 MRC2Q9UBG0 1479 aa28.46■■■□□ 2.15
VARS2-206ENST00000473916 RANGAP1P46060 587 aaPredicted RBP28.45■■■□□ 2.14
VARS2-206ENST00000473916 CLIP1P30622 1438 aa28.44■■■□□ 2.14
VARS2-206ENST00000473916 PPARGC1BQ86YN6 1023 aaKnown RBP28.44■■■□□ 2.14
VARS2-206ENST00000473916 CARMIL1Q5VZK9 1371 aa28.39■■■□□ 2.14
VARS2-206ENST00000473916 TARBP1Q13395 1621 aaKnown RBP28.39■■■□□ 2.13
VARS2-206ENST00000473916 ABCA5Q8WWZ7 1642 aa28.37■■■□□ 2.13
VARS2-206ENST00000473916 TDRD9Q8NDG6 1382 aaKnown RBP28.37■■■□□ 2.13
VARS2-206ENST00000473916 TRIM26Q12899 539 aaPredicted RBP28.36■■■□□ 2.13
VARS2-206ENST00000473916 ERCC6Q03468 1493 aa28.33■■■□□ 2.13
VARS2-206ENST00000473916 WDR62O43379 1518 aa28.32■■■□□ 2.12
VARS2-206ENST00000473916 GAPVD1Q14C86 1478 aa28.27■■■□□ 2.12
VARS2-206ENST00000473916 CUL7Q14999 1698 aa28.26■■■□□ 2.11
VARS2-206ENST00000473916 THOC2Q8NI27 1593 aaKnown RBP28.25■■■□□ 2.11
VARS2-206ENST00000473916 VPS8Q8N3P4 1428 aa28.2■■■□□ 2.11
VARS2-206ENST00000473916 ARAP1Q96P48 1450 aa28.2■■■□□ 2.1
VARS2-206ENST00000473916 TTBK1Q5TCY1 1321 aaPredicted RBP28.18■■■□□ 2.1
VARS2-206ENST00000473916 PBRM1Q86U86 1689 aa28.17■■■□□ 2.1
VARS2-206ENST00000473916 AQRO60306 1485 aaKnown RBP eCLIP28.16■■■□□ 2.1
VARS2-206ENST00000473916 ZNF608Q9ULD9 1512 aaPredicted RBP28.13■■■□□ 2.09
VARS2-206ENST00000473916 ARHGAP35Q9NRY4 1499 aa28.13■■■□□ 2.09
VARS2-206ENST00000473916 IFT140Q96RY7 1462 aa28.11■■■□□ 2.09
VARS2-206ENST00000473916 CTTNBP2Q8WZ74 1663 aa28.07■■■□□ 2.08
VARS2-206ENST00000473916 EIF4G3O43432 1585 aaKnown RBP28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms