RNA–Protein interactions for RNA: ENST00000473911.1

CLIC3-201, Transcript of chloride intracellular channel 3, humanhuman

TSL 5

Gene CLIC3, Length 732 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC3-201ENST00000473911 NISCHQ9Y2I1 1504 aa38.48■■■■□ 3.75
CLIC3-201ENST00000473911 ABCC9O60706 1549 aa34.82■■■■□ 3.16
CLIC3-201ENST00000473911 CCDC180Q9P1Z9 1646 aa34.52■■■■□ 3.12
CLIC3-201ENST00000473911 DNAJC5BQ9UF47 199 aa32.94■■■□□ 2.86
CLIC3-201ENST00000473911 RB1CC1Q8TDY2 1594 aa32.94■■■□□ 2.86
CLIC3-201ENST00000473911 NACADO15069 1562 aa32.67■■■□□ 2.82
CLIC3-201ENST00000473911 DCAF8L2P0C7V8 631 aa32.61■■■□□ 2.81
CLIC3-201ENST00000473911 PABPN1Q86U42 306 aaKnown RBP eCLIP32.45■■■□□ 2.79
CLIC3-201ENST00000473911 UNC13AQ9UPW8 1703 aa32.34■■■□□ 2.77
CLIC3-201ENST00000473911 MYO15BQ96JP2 1530 aa32.13■■■□□ 2.73
CLIC3-201ENST00000473911 BICRAQ9NZM4 1560 aa32.13■■■□□ 2.73
CLIC3-201ENST00000473911 ZCCHC6Q5VYS8 1495 aaKnown RBP31.85■■■□□ 2.69
CLIC3-201ENST00000473911 DCAF1Q9Y4B6 1507 aa31.69■■■□□ 2.66
CLIC3-201ENST00000473911 SCRIBQ14160 1630 aa31.57■■■□□ 2.64
CLIC3-201ENST00000473911 SHROOM4Q9ULL8 1493 aa31.44■■■□□ 2.62
CLIC3-201ENST00000473911 CC2D2AQ9P2K1 1620 aa31.42■■■□□ 2.62
CLIC3-201ENST00000473911 CECR2Q9BXF3 1484 aa31.33■■■□□ 2.61
CLIC3-201ENST00000473911 EIF4G1Q04637 1599 aaKnown RBP31.29■■■□□ 2.6
CLIC3-201ENST00000473911 DNAJC5Q9H3Z4 198 aa30.38■■■□□ 2.45
CLIC3-201ENST00000473911 NCAPD3P42695 1498 aa30.21■■■□□ 2.43
CLIC3-201ENST00000473911 ATAD2BQ9ULI0 1458 aa30.14■■■□□ 2.42
CLIC3-201ENST00000473911 SMARCA4P51532 1647 aa30.06■■■□□ 2.4
CLIC3-201ENST00000473911 ERCC6Q03468 1493 aa29.98■■■□□ 2.39
CLIC3-201ENST00000473911 SMARCA2P51531 1590 aa29.95■■■□□ 2.39
CLIC3-201ENST00000473911 CUX2O14529 1486 aa29.95■■■□□ 2.39
CLIC3-201ENST00000473911 HMGXB3Q12766 1538 aa29.94■■■□□ 2.38
CLIC3-201ENST00000473911 NESP48681 1621 aa29.92■■■□□ 2.38
CLIC3-201ENST00000473911 BAZ1AQ9NRL2 1556 aaPredicted RBP29.82■■■□□ 2.36
CLIC3-201ENST00000473911 BAZ1BQ9UIG0 1483 aaKnown RBP29.79■■■□□ 2.36
CLIC3-201ENST00000473911 MROH2BQ7Z745 1585 aa29.72■■■□□ 2.35
CLIC3-201ENST00000473911 PEG3Q9GZU2 1588 aa29.72■■■□□ 2.35
CLIC3-201ENST00000473911 THOC2Q8NI27 1593 aaKnown RBP29.56■■■□□ 2.32
CLIC3-201ENST00000473911 LAMC3Q9Y6N6 1575 aa29.52■■■□□ 2.32
CLIC3-201ENST00000473911 KIF21AQ7Z4S6 1674 aa29.47■■■□□ 2.31
CLIC3-201ENST00000473911 WIZO95785 1651 aa29.36■■■□□ 2.29
CLIC3-201ENST00000473911 PDS5BQ9NTI5 1447 aa29.35■■■□□ 2.29
CLIC3-201ENST00000473911 CADPSQ9ULU8 1353 aa29.29■■■□□ 2.28
CLIC3-201ENST00000473911 MRC2Q9UBG0 1479 aa29.14■■■□□ 2.26
CLIC3-201ENST00000473911 WDR62O43379 1518 aa29.09■■■□□ 2.25
CLIC3-201ENST00000473911 RSF1Q96T23 1441 aaPredicted RBP29.08■■■□□ 2.25
CLIC3-201ENST00000473911 FANCD2Q9BXW9 1451 aa28.97■■■□□ 2.23
CLIC3-201ENST00000473911 CEP164Q9UPV0 1460 aa28.97■■■□□ 2.23
CLIC3-201ENST00000473911 CFTRP13569 1480 aa28.93■■■□□ 2.22
CLIC3-201ENST00000473911 TRIM41Q8WV44 630 aa28.91■■■□□ 2.22
CLIC3-201ENST00000473911 TOP2AP11388 1531 aaKnown RBP28.89■■■□□ 2.21
CLIC3-201ENST00000473911 URB2Q14146 1524 aaKnown RBP28.8■■■□□ 2.2
CLIC3-201ENST00000473911 CCDC88BA6NC98 1476 aa28.63■■■□□ 2.17
CLIC3-201ENST00000473911 OSCARQ8IYS5 282 aa28.59■■■□□ 2.17
CLIC3-201ENST00000473911 PRDM2Q13029 1718 aa28.59■■■□□ 2.17
CLIC3-201ENST00000473911 ZNF608Q9ULD9 1512 aaPredicted RBP28.5■■■□□ 2.15
CLIC3-201ENST00000473911 TOPBP1Q92547 1522 aa28.43■■■□□ 2.14
CLIC3-201ENST00000473911 IFT140Q96RY7 1462 aa28.4■■■□□ 2.14
CLIC3-201ENST00000473911 RIMBP3CA6NJZ7 1639 aa28.3■■■□□ 2.12
CLIC3-201ENST00000473911 RIMBP3BA6NNM3 1639 aa28.3■■■□□ 2.12
CLIC3-201ENST00000473911 RIMBP3Q9UFD9 1639 aa28.3■■■□□ 2.12
CLIC3-201ENST00000473911 EIF4G3O43432 1585 aaKnown RBP28.26■■■□□ 2.11
CLIC3-201ENST00000473911 DNMBPQ6XZF7 1577 aa28.26■■■□□ 2.11
CLIC3-201ENST00000473911 AQRO60306 1485 aaKnown RBP eCLIP28.21■■■□□ 2.11
CLIC3-201ENST00000473911 ABCC8Q09428 1581 aa28.21■■■□□ 2.11
CLIC3-201ENST00000473911 TARBP1Q13395 1621 aaKnown RBP28.2■■■□□ 2.1
CLIC3-201ENST00000473911 ARHGEF11O15085 1522 aa28.18■■■□□ 2.1
CLIC3-201ENST00000473911 SUPT5HO00267 1087 aaKnown RBP28.13■■■□□ 2.09
CLIC3-201ENST00000473911 POLA1P09884 1462 aaPredicted RBP28.13■■■□□ 2.09
CLIC3-201ENST00000473911 CHD1O14646 1710 aa28.11■■■□□ 2.09
CLIC3-201ENST00000473911 RAD54L2Q9Y4B4 1467 aa28.09■■■□□ 2.09
CLIC3-201ENST00000473911 FBLN2P98095 1184 aa28.01■■■□□ 2.07
CLIC3-201ENST00000473911 CYB5RLQ6IPT4 315 aa28.01■■■□□ 2.07
CLIC3-201ENST00000473911 TDRD9Q8NDG6 1382 aaKnown RBP28■■■□□ 2.07
CLIC3-201ENST00000473911 SOGA1O94964 1423 aa27.98■■■□□ 2.07
CLIC3-201ENST00000473911 FGD5Q6ZNL6 1462 aa27.93■■■□□ 2.06
CLIC3-201ENST00000473911 ARAP1Q96P48 1450 aa27.92■■■□□ 2.06
CLIC3-201ENST00000473911 CUX1P39880 1505 aa27.92■■■□□ 2.06
CLIC3-201ENST00000473911 SNAPC4Q5SXM2 1469 aa27.87■■■□□ 2.05
CLIC3-201ENST00000473911 CLASP1Q7Z460 1538 aa27.77■■■□□ 2.04
CLIC3-201ENST00000473911 WDR97A6NE52 1622 aa27.74■■■□□ 2.03
CLIC3-201ENST00000473911 CHMP7Q8WUX9 453 aaPredicted RBP27.73■■■□□ 2.03
CLIC3-201ENST00000473911 GRIN2BQ13224 1484 aa27.72■■■□□ 2.03
CLIC3-201ENST00000473911 MAGI1Q96QZ7 1491 aaPredicted RBP27.71■■■□□ 2.03
CLIC3-201ENST00000473911 TRHP20396 242 aaPredicted RBP27.71■■■□□ 2.03
CLIC3-201ENST00000473911 SYNJ1O43426 1573 aa27.65■■■□□ 2.02
CLIC3-201ENST00000473911 SYNJ2O15056 1496 aa27.64■■■□□ 2.02
CLIC3-201ENST00000473911 PBRM1Q86U86 1689 aa27.64■■■□□ 2.02
CLIC3-201ENST00000473911 GAPVD1Q14C86 1478 aa27.63■■■□□ 2.01
CLIC3-201ENST00000473911 ABCA10Q8WWZ4 1543 aa27.57■■■□□ 2
CLIC3-201ENST00000473911 ABCA5Q8WWZ7 1642 aa27.56■■■□□ 2
CLIC3-201ENST00000473911 WRNQ14191 1432 aaPredicted RBP eCLIP27.45■■□□□ 1.98
CLIC3-201ENST00000473911 ERCC6L2Q5T890 1561 aa27.43■■□□□ 1.98
CLIC3-201ENST00000473911 GRIN2AQ12879 1464 aa27.38■■□□□ 1.97
CLIC3-201ENST00000473911 TOP2BQ02880 1626 aa27.38■■□□□ 1.97
CLIC3-201ENST00000473911 BIVM-ERCC5R4GMW8 1640 aa27.37■■□□□ 1.97
CLIC3-201ENST00000473911 ADAMTS12P58397 1594 aa27.36■■□□□ 1.97
CLIC3-201ENST00000473911 CEP170Q5SW79 1584 aa27.35■■□□□ 1.97
CLIC3-201ENST00000473911 NUP160Q12769 1436 aa27.31■■□□□ 1.96
CLIC3-201ENST00000473911 FHAD1B1AJZ9 1412 aa27.24■■□□□ 1.95
CLIC3-201ENST00000473911 SHROOM2Q13796 1616 aa27.2■■□□□ 1.95
CLIC3-201ENST00000473911 AEBP2Q6ZN18 517 aaPredicted RBP27.2■■□□□ 1.94
CLIC3-201ENST00000473911 ERICH3Q5RHP9 1530 aa27.18■■□□□ 1.94
CLIC3-201ENST00000473911 PRG4Q92954 1404 aaPredicted RBP27.07■■□□□ 1.92
CLIC3-201ENST00000473911 JPH4Q96JJ6 628 aa27.04■■□□□ 1.92
CLIC3-201ENST00000473911 RUSC2Q8N2Y8 1516 aa26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms