RNA–Protein interactions for RNA: ENST00000473657.1

PHACTR3-207, Transcript of phosphatase and actin regulator 3, humanhuman

TSL 2

Gene PHACTR3, Length 2,408 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHACTR3-207ENST00000473657 NISCHQ9Y2I1 1504 aa19.86■□□□□ 0.77
PHACTR3-207ENST00000473657 CCDC180Q9P1Z9 1646 aa17.21■□□□□ 0.35
PHACTR3-207ENST00000473657 ZCCHC6Q5VYS8 1495 aaKnown RBP16.76■□□□□ 0.27
PHACTR3-207ENST00000473657 DCAF1Q9Y4B6 1507 aa16.46■□□□□ 0.23
PHACTR3-207ENST00000473657 SHROOM4Q9ULL8 1493 aa16.3■□□□□ 0.2
PHACTR3-207ENST00000473657 MYO15BQ96JP2 1530 aa16.17■□□□□ 0.18
PHACTR3-207ENST00000473657 DCAF8L2P0C7V8 631 aa16.17■□□□□ 0.18
PHACTR3-207ENST00000473657 ABCC9O60706 1549 aa15.96■□□□□ 0.14
PHACTR3-207ENST00000473657 NACADO15069 1562 aa15.94■□□□□ 0.14
PHACTR3-207ENST00000473657 SCRIBQ14160 1630 aa15.82■□□□□ 0.12
PHACTR3-207ENST00000473657 SUPT5HO00267 1087 aaKnown RBP15.8■□□□□ 0.12
PHACTR3-207ENST00000473657 RB1CC1Q8TDY2 1594 aa15.73■□□□□ 0.11
PHACTR3-207ENST00000473657 RSF1Q96T23 1441 aaPredicted RBP15.51■□□□□ 0.07
PHACTR3-207ENST00000473657 UNC13AQ9UPW8 1703 aa15.47■□□□□ 0.07
PHACTR3-207ENST00000473657 CECR2Q9BXF3 1484 aa15.4■□□□□ 0.06
PHACTR3-207ENST00000473657 MROH2BQ7Z745 1585 aa15.35■□□□□ 0.05
PHACTR3-207ENST00000473657 CHIC1Q5VXU3 224 aa15.33■□□□□ 0.04
PHACTR3-207ENST00000473657 BAZ1AQ9NRL2 1556 aaPredicted RBP15.31■□□□□ 0.04
PHACTR3-207ENST00000473657 BICRAQ9NZM4 1560 aa15.3■□□□□ 0.04
PHACTR3-207ENST00000473657 WIZO95785 1651 aa15.24■□□□□ 0.03
PHACTR3-207ENST00000473657 SMARCA4P51532 1647 aa15.21■□□□□ 0.03
PHACTR3-207ENST00000473657 TOP2AP11388 1531 aaKnown RBP15.1■□□□□ 0.01
PHACTR3-207ENST00000473657 PABPN1Q86U42 306 aaKnown RBP eCLIP15.08■□□□□ 0
PHACTR3-207ENST00000473657 PEG3Q9GZU2 1588 aa15.05■□□□□ -0
PHACTR3-207ENST00000473657 EIF4G1Q04637 1599 aaKnown RBP15.01□□□□□ -0.01
PHACTR3-207ENST00000473657 SMARCA2P51531 1590 aa14.97□□□□□ -0.01
PHACTR3-207ENST00000473657 CCDC88BA6NC98 1476 aa14.93□□□□□ -0.02
PHACTR3-207ENST00000473657 ATAD2BQ9ULI0 1458 aa14.88□□□□□ -0.03
PHACTR3-207ENST00000473657 TRIM41Q8WV44 630 aa14.85□□□□□ -0.03
PHACTR3-207ENST00000473657 BAZ1BQ9UIG0 1483 aaKnown RBP14.79□□□□□ -0.04
PHACTR3-207ENST00000473657 HMGXB3Q12766 1538 aa14.73□□□□□ -0.05
PHACTR3-207ENST00000473657 LOC105371045A0A1W2PR82 267 aa14.73□□□□□ -0.05
PHACTR3-207ENST00000473657 NCAPD3P42695 1498 aa14.72□□□□□ -0.05
PHACTR3-207ENST00000473657 ABCC8Q09428 1581 aa14.7□□□□□ -0.06
PHACTR3-207ENST00000473657 WRNQ14191 1432 aaPredicted RBP eCLIP14.56□□□□□ -0.08
PHACTR3-207ENST00000473657 FAM9AQ8IZU1 332 aaPredicted RBP14.56□□□□□ -0.08
PHACTR3-207ENST00000473657 SYNJ1O43426 1573 aa14.53□□□□□ -0.08
PHACTR3-207ENST00000473657 EEA1Q15075 1411 aa14.51□□□□□ -0.09
PHACTR3-207ENST00000473657 CC2D2AQ9P2K1 1620 aa14.49□□□□□ -0.09
PHACTR3-207ENST00000473657 SOGA1O94964 1423 aa14.48□□□□□ -0.09
PHACTR3-207ENST00000473657 CFTRP13569 1480 aa14.47□□□□□ -0.09
PHACTR3-207ENST00000473657 TOP2BQ02880 1626 aa14.45□□□□□ -0.1
PHACTR3-207ENST00000473657 BIVM-ERCC5R4GMW8 1640 aa14.45□□□□□ -0.1
PHACTR3-207ENST00000473657 PRDM2Q13029 1718 aa14.44□□□□□ -0.1
PHACTR3-207ENST00000473657 RUSC2Q8N2Y8 1516 aa14.41□□□□□ -0.1
PHACTR3-207ENST00000473657 CSRNP3Q8WYN3 585 aa14.37□□□□□ -0.11
PHACTR3-207ENST00000473657 CUX1P39880 1505 aa14.34□□□□□ -0.11
PHACTR3-207ENST00000473657 KIF21BO75037 1637 aa14.34□□□□□ -0.11
PHACTR3-207ENST00000473657 CADPSQ9ULU8 1353 aa14.33□□□□□ -0.11
PHACTR3-207ENST00000473657 TNIKQ9UKE5 1360 aa14.33□□□□□ -0.12
PHACTR3-207ENST00000473657 PCGF6Q9BYE7 350 aa14.32□□□□□ -0.12
PHACTR3-207ENST00000473657 GOLGA3Q08378 1498 aa14.31□□□□□ -0.12
PHACTR3-207ENST00000473657 EHMT2Q96KQ7 1210 aa14.31□□□□□ -0.12
PHACTR3-207ENST00000473657 CEP164Q9UPV0 1460 aa14.29□□□□□ -0.12
PHACTR3-207ENST00000473657 TRIM26Q12899 539 aaPredicted RBP14.28□□□□□ -0.12
PHACTR3-207ENST00000473657 CEP162Q5TB80 1403 aa14.26□□□□□ -0.13
PHACTR3-207ENST00000473657 ERICH3Q5RHP9 1530 aa14.19□□□□□ -0.14
PHACTR3-207ENST00000473657 PRXQ9BXM0 1461 aa14.18□□□□□ -0.14
PHACTR3-207ENST00000473657 FANCD2Q9BXW9 1451 aa14.18□□□□□ -0.14
PHACTR3-207ENST00000473657 RAPGEF2Q9Y4G8 1499 aa14.18□□□□□ -0.14
PHACTR3-207ENST00000473657 HRCP23327 699 aa14.17□□□□□ -0.14
PHACTR3-207ENST00000473657 LAMC3Q9Y6N6 1575 aa14.17□□□□□ -0.14
PHACTR3-207ENST00000473657 KIF27Q86VH2 1401 aa14.16□□□□□ -0.14
PHACTR3-207ENST00000473657 UBTFP17480 764 aaKnown RBP14.16□□□□□ -0.14
PHACTR3-207ENST00000473657 DNMBPQ6XZF7 1577 aa14.12□□□□□ -0.15
PHACTR3-207ENST00000473657 NESP48681 1621 aa14.12□□□□□ -0.15
PHACTR3-207ENST00000473657 FGD5Q6ZNL6 1462 aa14.12□□□□□ -0.15
PHACTR3-207ENST00000473657 CLIP1P30622 1438 aa14.08□□□□□ -0.16
PHACTR3-207ENST00000473657 TOPBP1Q92547 1522 aa14.07□□□□□ -0.16
PHACTR3-207ENST00000473657 CUX2O14529 1486 aa14.06□□□□□ -0.16
PHACTR3-207ENST00000473657 IGF1RP08069 1367 aa14.03□□□□□ -0.16
PHACTR3-207ENST00000473657 ABCA10Q8WWZ4 1543 aa14.02□□□□□ -0.16
PHACTR3-207ENST00000473657 POLA1P09884 1462 aaPredicted RBP14.02□□□□□ -0.16
PHACTR3-207ENST00000473657 DNAJC5BQ9UF47 199 aa14.02□□□□□ -0.17
PHACTR3-207ENST00000473657 VPS8Q8N3P4 1428 aa14.01□□□□□ -0.17
PHACTR3-207ENST00000473657 PDS5BQ9NTI5 1447 aa14.01□□□□□ -0.17
PHACTR3-207ENST00000473657 URB2Q14146 1524 aaKnown RBP14.01□□□□□ -0.17
PHACTR3-207ENST00000473657 WDR97A6NE52 1622 aa13.98□□□□□ -0.17
PHACTR3-207ENST00000473657 KIF21AQ7Z4S6 1674 aa13.98□□□□□ -0.17
PHACTR3-207ENST00000473657 PPARGC1BQ86YN6 1023 aaKnown RBP13.97□□□□□ -0.17
PHACTR3-207ENST00000473657 RAD54L2Q9Y4B4 1467 aa13.96□□□□□ -0.18
PHACTR3-207ENST00000473657 ARAP1Q96P48 1450 aa13.94□□□□□ -0.18
PHACTR3-207ENST00000473657 CARMIL1Q5VZK9 1371 aa13.94□□□□□ -0.18
PHACTR3-207ENST00000473657 CUL7Q14999 1698 aa13.92□□□□□ -0.18
PHACTR3-207ENST00000473657 ABCA5Q8WWZ7 1642 aa13.91□□□□□ -0.18
PHACTR3-207ENST00000473657 ARHGAP35Q9NRY4 1499 aa13.88□□□□□ -0.19
PHACTR3-207ENST00000473657 TARBP1Q13395 1621 aaKnown RBP13.87□□□□□ -0.19
PHACTR3-207ENST00000473657 ZEB1P37275 1124 aaPredicted RBP13.84□□□□□ -0.19
PHACTR3-207ENST00000473657 MRC2Q9UBG0 1479 aa13.83□□□□□ -0.19
PHACTR3-207ENST00000473657 RANGAP1P46060 587 aaPredicted RBP13.81□□□□□ -0.2
PHACTR3-207ENST00000473657 GAPVD1Q14C86 1478 aa13.81□□□□□ -0.2
PHACTR3-207ENST00000473657 CTTNBP2Q8WZ74 1663 aa13.8□□□□□ -0.2
PHACTR3-207ENST00000473657 WDR62O43379 1518 aa13.79□□□□□ -0.2
PHACTR3-207ENST00000473657 APLP2Q06481 763 aa13.78□□□□□ -0.2
PHACTR3-207ENST00000473657 TDRD9Q8NDG6 1382 aaKnown RBP13.78□□□□□ -0.2
PHACTR3-207ENST00000473657 TTBK1Q5TCY1 1321 aaPredicted RBP13.78□□□□□ -0.2
PHACTR3-207ENST00000473657 EFCAB5A4FU69 1503 aa13.77□□□□□ -0.21
PHACTR3-207ENST00000473657 MAP3K1Q13233 1512 aa13.76□□□□□ -0.21
PHACTR3-207ENST00000473657 PBRM1Q86U86 1689 aa13.75□□□□□ -0.21
PHACTR3-207ENST00000473657 IFT140Q96RY7 1462 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms