RNA–Protein interactions for RNA: ENST00000473345.5

MCF2L-223, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 399 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-223ENST00000473345 NISCHQ9Y2I1 1504 aa24.76■■□□□ 1.55
MCF2L-223ENST00000473345 ABCC9O60706 1549 aa22.56■■□□□ 1.2
MCF2L-223ENST00000473345 CCDC180Q9P1Z9 1646 aa22.2■■□□□ 1.15
MCF2L-223ENST00000473345 DNAJC5BQ9UF47 199 aa21.5■■□□□ 1.03
MCF2L-223ENST00000473345 RB1CC1Q8TDY2 1594 aa21.23■□□□□ 0.99
MCF2L-223ENST00000473345 NACADO15069 1562 aa21.05■□□□□ 0.96
MCF2L-223ENST00000473345 PABPN1Q86U42 306 aaKnown RBP eCLIP21■□□□□ 0.95
MCF2L-223ENST00000473345 DCAF8L2P0C7V8 631 aa20.93■□□□□ 0.94
MCF2L-223ENST00000473345 UNC13AQ9UPW8 1703 aa20.86■□□□□ 0.93
MCF2L-223ENST00000473345 BICRAQ9NZM4 1560 aa20.81■□□□□ 0.92
MCF2L-223ENST00000473345 MYO15BQ96JP2 1530 aa20.69■□□□□ 0.9
MCF2L-223ENST00000473345 ZCCHC6Q5VYS8 1495 aaKnown RBP20.49■□□□□ 0.87
MCF2L-223ENST00000473345 DCAF1Q9Y4B6 1507 aa20.37■□□□□ 0.85
MCF2L-223ENST00000473345 SCRIBQ14160 1630 aa20.33■□□□□ 0.84
MCF2L-223ENST00000473345 CC2D2AQ9P2K1 1620 aa20.33■□□□□ 0.84
MCF2L-223ENST00000473345 CECR2Q9BXF3 1484 aa20.29■□□□□ 0.84
MCF2L-223ENST00000473345 SHROOM4Q9ULL8 1493 aa20.28■□□□□ 0.84
MCF2L-223ENST00000473345 EIF4G1Q04637 1599 aaKnown RBP20.23■□□□□ 0.83
MCF2L-223ENST00000473345 DNAJC5Q9H3Z4 198 aa19.73■□□□□ 0.75
MCF2L-223ENST00000473345 NCAPD3P42695 1498 aa19.5■□□□□ 0.71
MCF2L-223ENST00000473345 ATAD2BQ9ULI0 1458 aa19.44■□□□□ 0.7
MCF2L-223ENST00000473345 CUX2O14529 1486 aa19.41■□□□□ 0.7
MCF2L-223ENST00000473345 NESP48681 1621 aa19.37■□□□□ 0.69
MCF2L-223ENST00000473345 ERCC6Q03468 1493 aa19.36■□□□□ 0.69
MCF2L-223ENST00000473345 SMARCA4P51532 1647 aa19.35■□□□□ 0.69
MCF2L-223ENST00000473345 HMGXB3Q12766 1538 aa19.3■□□□□ 0.68
MCF2L-223ENST00000473345 SMARCA2P51531 1590 aa19.27■□□□□ 0.67
MCF2L-223ENST00000473345 BAZ1BQ9UIG0 1483 aaKnown RBP19.17■□□□□ 0.66
MCF2L-223ENST00000473345 THOC2Q8NI27 1593 aaKnown RBP19.16■□□□□ 0.66
MCF2L-223ENST00000473345 BAZ1AQ9NRL2 1556 aaPredicted RBP19.15■□□□□ 0.66
MCF2L-223ENST00000473345 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
MCF2L-223ENST00000473345 PEG3Q9GZU2 1588 aa19.15■□□□□ 0.66
MCF2L-223ENST00000473345 LAMC3Q9Y6N6 1575 aa19.03■□□□□ 0.64
MCF2L-223ENST00000473345 KIF21AQ7Z4S6 1674 aa19.02■□□□□ 0.64
MCF2L-223ENST00000473345 PDS5BQ9NTI5 1447 aa18.91■□□□□ 0.62
MCF2L-223ENST00000473345 CADPSQ9ULU8 1353 aa18.89■□□□□ 0.61
MCF2L-223ENST00000473345 WIZO95785 1651 aa18.87■□□□□ 0.61
MCF2L-223ENST00000473345 MRC2Q9UBG0 1479 aa18.83■□□□□ 0.6
MCF2L-223ENST00000473345 WDR62O43379 1518 aa18.81■□□□□ 0.6
MCF2L-223ENST00000473345 TRIM41Q8WV44 630 aa18.76■□□□□ 0.59
MCF2L-223ENST00000473345 FANCD2Q9BXW9 1451 aa18.68■□□□□ 0.58
MCF2L-223ENST00000473345 CEP164Q9UPV0 1460 aa18.68■□□□□ 0.58
MCF2L-223ENST00000473345 CFTRP13569 1480 aa18.65■□□□□ 0.58
MCF2L-223ENST00000473345 RSF1Q96T23 1441 aaPredicted RBP18.64■□□□□ 0.57
MCF2L-223ENST00000473345 URB2Q14146 1524 aaKnown RBP18.61■□□□□ 0.57
MCF2L-223ENST00000473345 TOP2AP11388 1531 aaKnown RBP18.55■□□□□ 0.56
MCF2L-223ENST00000473345 OSCARQ8IYS5 282 aa18.48■□□□□ 0.55
MCF2L-223ENST00000473345 ZNF608Q9ULD9 1512 aaPredicted RBP18.44■□□□□ 0.54
MCF2L-223ENST00000473345 CCDC88BA6NC98 1476 aa18.4■□□□□ 0.54
MCF2L-223ENST00000473345 RIMBP3CA6NJZ7 1639 aa18.35■□□□□ 0.53
MCF2L-223ENST00000473345 RIMBP3BA6NNM3 1639 aa18.35■□□□□ 0.53
MCF2L-223ENST00000473345 RIMBP3Q9UFD9 1639 aa18.35■□□□□ 0.53
MCF2L-223ENST00000473345 PRDM2Q13029 1718 aa18.33■□□□□ 0.52
MCF2L-223ENST00000473345 TOPBP1Q92547 1522 aa18.33■□□□□ 0.52
MCF2L-223ENST00000473345 IFT140Q96RY7 1462 aa18.31■□□□□ 0.52
MCF2L-223ENST00000473345 ARHGEF11O15085 1522 aa18.27■□□□□ 0.51
MCF2L-223ENST00000473345 EIF4G3O43432 1585 aaKnown RBP18.25■□□□□ 0.51
MCF2L-223ENST00000473345 AQRO60306 1485 aaKnown RBP eCLIP18.21■□□□□ 0.51
MCF2L-223ENST00000473345 TARBP1Q13395 1621 aaKnown RBP18.2■□□□□ 0.5
MCF2L-223ENST00000473345 DNMBPQ6XZF7 1577 aa18.2■□□□□ 0.5
MCF2L-223ENST00000473345 CHD1O14646 1710 aa18.14■□□□□ 0.49
MCF2L-223ENST00000473345 POLA1P09884 1462 aaPredicted RBP18.14■□□□□ 0.49
MCF2L-223ENST00000473345 CYB5RLQ6IPT4 315 aa18.13■□□□□ 0.49
MCF2L-223ENST00000473345 ARAP1Q96P48 1450 aa18.13■□□□□ 0.49
MCF2L-223ENST00000473345 RAD54L2Q9Y4B4 1467 aa18.13■□□□□ 0.49
MCF2L-223ENST00000473345 ABCC8Q09428 1581 aa18.11■□□□□ 0.49
MCF2L-223ENST00000473345 TDRD9Q8NDG6 1382 aaKnown RBP18.05■□□□□ 0.48
MCF2L-223ENST00000473345 FBLN2P98095 1184 aa18.03■□□□□ 0.48
MCF2L-223ENST00000473345 SOGA1O94964 1423 aa18■□□□□ 0.47
MCF2L-223ENST00000473345 SNAPC4Q5SXM2 1469 aa17.99■□□□□ 0.47
MCF2L-223ENST00000473345 FGD5Q6ZNL6 1462 aa17.99■□□□□ 0.47
MCF2L-223ENST00000473345 CUX1P39880 1505 aa17.98■□□□□ 0.47
MCF2L-223ENST00000473345 CLASP1Q7Z460 1538 aa17.97■□□□□ 0.47
MCF2L-223ENST00000473345 TRHP20396 242 aaPredicted RBP17.93■□□□□ 0.46
MCF2L-223ENST00000473345 WDR97A6NE52 1622 aa17.87■□□□□ 0.45
MCF2L-223ENST00000473345 GRIN2BQ13224 1484 aa17.85■□□□□ 0.45
MCF2L-223ENST00000473345 MAGI1Q96QZ7 1491 aaPredicted RBP17.85■□□□□ 0.45
MCF2L-223ENST00000473345 CHMP7Q8WUX9 453 aaPredicted RBP17.83■□□□□ 0.44
MCF2L-223ENST00000473345 SYNJ2O15056 1496 aa17.82■□□□□ 0.44
MCF2L-223ENST00000473345 SYNJ1O43426 1573 aa17.82■□□□□ 0.44
MCF2L-223ENST00000473345 ERCC6L2Q5T890 1561 aa17.78■□□□□ 0.44
MCF2L-223ENST00000473345 GAPVD1Q14C86 1478 aa17.77■□□□□ 0.44
MCF2L-223ENST00000473345 PBRM1Q86U86 1689 aa17.77■□□□□ 0.43
MCF2L-223ENST00000473345 ABCA5Q8WWZ7 1642 aa17.76■□□□□ 0.43
MCF2L-223ENST00000473345 ABCA10Q8WWZ4 1543 aa17.74■□□□□ 0.43
MCF2L-223ENST00000473345 CEP170Q5SW79 1584 aa17.66■□□□□ 0.42
MCF2L-223ENST00000473345 GRIN2AQ12879 1464 aa17.65■□□□□ 0.42
MCF2L-223ENST00000473345 NUP160Q12769 1436 aa17.64■□□□□ 0.41
MCF2L-223ENST00000473345 ADAMTS12P58397 1594 aa17.63■□□□□ 0.41
MCF2L-223ENST00000473345 SUPT5HO00267 1087 aaKnown RBP17.6■□□□□ 0.41
MCF2L-223ENST00000473345 WRNQ14191 1432 aaPredicted RBP eCLIP17.57■□□□□ 0.4
MCF2L-223ENST00000473345 SHROOM2Q13796 1616 aa17.57■□□□□ 0.4
MCF2L-223ENST00000473345 TOP2BQ02880 1626 aa17.55■□□□□ 0.4
MCF2L-223ENST00000473345 BIVM-ERCC5R4GMW8 1640 aa17.55■□□□□ 0.4
MCF2L-223ENST00000473345 FHAD1B1AJZ9 1412 aa17.53■□□□□ 0.4
MCF2L-223ENST00000473345 AEBP2Q6ZN18 517 aaPredicted RBP17.47■□□□□ 0.39
MCF2L-223ENST00000473345 ERICH3Q5RHP9 1530 aa17.47■□□□□ 0.39
MCF2L-223ENST00000473345 PRG4Q92954 1404 aaPredicted RBP17.45■□□□□ 0.38
MCF2L-223ENST00000473345 KIF13AQ9H1H9 1805 aa17.43■□□□□ 0.38
MCF2L-223ENST00000473345 JPH4Q96JJ6 628 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 1216.8 ms