RNA–Protein interactions for RNA: ENST00000473308.1

C1orf56-203, Transcript of chromosome 1 open reading frame 56, humanhuman

TSL 3

Gene C1orf56, Length 323 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C1orf56-203ENST00000473308 NISCHQ9Y2I1 1504 aa22.39■■□□□ 1.17
C1orf56-203ENST00000473308 CCDC180Q9P1Z9 1646 aa19.91■□□□□ 0.78
C1orf56-203ENST00000473308 ABCC9O60706 1549 aa19.58■□□□□ 0.73
C1orf56-203ENST00000473308 RB1CC1Q8TDY2 1594 aa18.78■□□□□ 0.6
C1orf56-203ENST00000473308 DCAF8L2P0C7V8 631 aa18.75■□□□□ 0.59
C1orf56-203ENST00000473308 NACADO15069 1562 aa18.75■□□□□ 0.59
C1orf56-203ENST00000473308 ZCCHC6Q5VYS8 1495 aaKnown RBP18.64■□□□□ 0.57
C1orf56-203ENST00000473308 MYO15BQ96JP2 1530 aa18.63■□□□□ 0.57
C1orf56-203ENST00000473308 DCAF1Q9Y4B6 1507 aa18.52■□□□□ 0.56
C1orf56-203ENST00000473308 UNC13AQ9UPW8 1703 aa18.36■□□□□ 0.53
C1orf56-203ENST00000473308 PABPN1Q86U42 306 aaKnown RBP eCLIP18.31■□□□□ 0.52
C1orf56-203ENST00000473308 BICRAQ9NZM4 1560 aa18.24■□□□□ 0.51
C1orf56-203ENST00000473308 SCRIBQ14160 1630 aa18.18■□□□□ 0.5
C1orf56-203ENST00000473308 DNAJC5BQ9UF47 199 aa18.1■□□□□ 0.49
C1orf56-203ENST00000473308 SHROOM4Q9ULL8 1493 aa18.01■□□□□ 0.47
C1orf56-203ENST00000473308 EIF4G1Q04637 1599 aaKnown RBP17.75■□□□□ 0.43
C1orf56-203ENST00000473308 CC2D2AQ9P2K1 1620 aa17.7■□□□□ 0.42
C1orf56-203ENST00000473308 CECR2Q9BXF3 1484 aa17.61■□□□□ 0.41
C1orf56-203ENST00000473308 SMARCA4P51532 1647 aa17.38■□□□□ 0.37
C1orf56-203ENST00000473308 BAZ1AQ9NRL2 1556 aaPredicted RBP17.35■□□□□ 0.37
C1orf56-203ENST00000473308 NCAPD3P42695 1498 aa17.32■□□□□ 0.36
C1orf56-203ENST00000473308 ATAD2BQ9ULI0 1458 aa17.32■□□□□ 0.36
C1orf56-203ENST00000473308 SMARCA2P51531 1590 aa17.27■□□□□ 0.35
C1orf56-203ENST00000473308 MROH2BQ7Z745 1585 aa17.26■□□□□ 0.35
C1orf56-203ENST00000473308 PEG3Q9GZU2 1588 aa17.22■□□□□ 0.35
C1orf56-203ENST00000473308 HMGXB3Q12766 1538 aa17.21■□□□□ 0.35
C1orf56-203ENST00000473308 BAZ1BQ9UIG0 1483 aaKnown RBP17.16■□□□□ 0.34
C1orf56-203ENST00000473308 WIZO95785 1651 aa17.06■□□□□ 0.32
C1orf56-203ENST00000473308 RSF1Q96T23 1441 aaPredicted RBP17.04■□□□□ 0.32
C1orf56-203ENST00000473308 NESP48681 1621 aa16.93■□□□□ 0.3
C1orf56-203ENST00000473308 TOP2AP11388 1531 aaKnown RBP16.87■□□□□ 0.29
C1orf56-203ENST00000473308 ERCC6Q03468 1493 aa16.86■□□□□ 0.29
C1orf56-203ENST00000473308 LAMC3Q9Y6N6 1575 aa16.85■□□□□ 0.29
C1orf56-203ENST00000473308 CADPSQ9ULU8 1353 aa16.82■□□□□ 0.28
C1orf56-203ENST00000473308 PDS5BQ9NTI5 1447 aa16.76■□□□□ 0.27
C1orf56-203ENST00000473308 CUX2O14529 1486 aa16.73■□□□□ 0.27
C1orf56-203ENST00000473308 KIF21AQ7Z4S6 1674 aa16.7■□□□□ 0.26
C1orf56-203ENST00000473308 CCDC88BA6NC98 1476 aa16.7■□□□□ 0.26
C1orf56-203ENST00000473308 CFTRP13569 1480 aa16.7■□□□□ 0.26
C1orf56-203ENST00000473308 THOC2Q8NI27 1593 aaKnown RBP16.68■□□□□ 0.26
C1orf56-203ENST00000473308 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
C1orf56-203ENST00000473308 MRC2Q9UBG0 1479 aa16.59■□□□□ 0.25
C1orf56-203ENST00000473308 CEP164Q9UPV0 1460 aa16.58■□□□□ 0.24
C1orf56-203ENST00000473308 SUPT5HO00267 1087 aaKnown RBP16.56■□□□□ 0.24
C1orf56-203ENST00000473308 WDR62O43379 1518 aa16.53■□□□□ 0.24
C1orf56-203ENST00000473308 PRDM2Q13029 1718 aa16.52■□□□□ 0.24
C1orf56-203ENST00000473308 URB2Q14146 1524 aaKnown RBP16.46■□□□□ 0.23
C1orf56-203ENST00000473308 TOPBP1Q92547 1522 aa16.35■□□□□ 0.21
C1orf56-203ENST00000473308 DNAJC5Q9H3Z4 198 aa16.33■□□□□ 0.2
C1orf56-203ENST00000473308 ABCC8Q09428 1581 aa16.32■□□□□ 0.2
C1orf56-203ENST00000473308 DNMBPQ6XZF7 1577 aa16.3■□□□□ 0.2
C1orf56-203ENST00000473308 IFT140Q96RY7 1462 aa16.26■□□□□ 0.19
C1orf56-203ENST00000473308 ZNF608Q9ULD9 1512 aaPredicted RBP16.2■□□□□ 0.18
C1orf56-203ENST00000473308 POLA1P09884 1462 aaPredicted RBP16.2■□□□□ 0.18
C1orf56-203ENST00000473308 CUX1P39880 1505 aa16.19■□□□□ 0.18
C1orf56-203ENST00000473308 TARBP1Q13395 1621 aaKnown RBP16.16■□□□□ 0.18
C1orf56-203ENST00000473308 FGD5Q6ZNL6 1462 aa16.15■□□□□ 0.18
C1orf56-203ENST00000473308 RAD54L2Q9Y4B4 1467 aa16.15■□□□□ 0.18
C1orf56-203ENST00000473308 SOGA1O94964 1423 aa16.14■□□□□ 0.17
C1orf56-203ENST00000473308 AQRO60306 1485 aaKnown RBP eCLIP16.11■□□□□ 0.17
C1orf56-203ENST00000473308 EIF4G3O43432 1585 aaKnown RBP16.1■□□□□ 0.17
C1orf56-203ENST00000473308 WRNQ14191 1432 aaPredicted RBP eCLIP16.06■□□□□ 0.16
C1orf56-203ENST00000473308 TDRD9Q8NDG6 1382 aaKnown RBP16.06■□□□□ 0.16
C1orf56-203ENST00000473308 OSCARQ8IYS5 282 aa16.04■□□□□ 0.16
C1orf56-203ENST00000473308 SYNJ1O43426 1573 aa16.03■□□□□ 0.16
C1orf56-203ENST00000473308 TOP2BQ02880 1626 aa16.02■□□□□ 0.16
C1orf56-203ENST00000473308 WDR97A6NE52 1622 aa16.01■□□□□ 0.15
C1orf56-203ENST00000473308 BIVM-ERCC5R4GMW8 1640 aa16.01■□□□□ 0.15
C1orf56-203ENST00000473308 ABCA10Q8WWZ4 1543 aa15.99■□□□□ 0.15
C1orf56-203ENST00000473308 GRIN2BQ13224 1484 aa15.95■□□□□ 0.14
C1orf56-203ENST00000473308 GAPVD1Q14C86 1478 aa15.94■□□□□ 0.14
C1orf56-203ENST00000473308 SNAPC4Q5SXM2 1469 aa15.94■□□□□ 0.14
C1orf56-203ENST00000473308 ABCA5Q8WWZ7 1642 aa15.92■□□□□ 0.14
C1orf56-203ENST00000473308 CHD1O14646 1710 aa15.91■□□□□ 0.14
C1orf56-203ENST00000473308 FBLN2P98095 1184 aa15.91■□□□□ 0.14
C1orf56-203ENST00000473308 MAGI1Q96QZ7 1491 aaPredicted RBP15.91■□□□□ 0.14
C1orf56-203ENST00000473308 PBRM1Q86U86 1689 aa15.89■□□□□ 0.13
C1orf56-203ENST00000473308 CHMP7Q8WUX9 453 aaPredicted RBP15.87■□□□□ 0.13
C1orf56-203ENST00000473308 SYNJ2O15056 1496 aa15.85■□□□□ 0.13
C1orf56-203ENST00000473308 ERICH3Q5RHP9 1530 aa15.79■□□□□ 0.12
C1orf56-203ENST00000473308 RIMBP3CA6NJZ7 1639 aa15.77■□□□□ 0.12
C1orf56-203ENST00000473308 RIMBP3BA6NNM3 1639 aa15.77■□□□□ 0.12
C1orf56-203ENST00000473308 RIMBP3Q9UFD9 1639 aa15.77■□□□□ 0.12
C1orf56-203ENST00000473308 ADAMTS12P58397 1594 aa15.77■□□□□ 0.11
C1orf56-203ENST00000473308 ARHGEF11O15085 1522 aa15.76■□□□□ 0.11
C1orf56-203ENST00000473308 FHAD1B1AJZ9 1412 aa15.76■□□□□ 0.11
C1orf56-203ENST00000473308 CLASP1Q7Z460 1538 aa15.75■□□□□ 0.11
C1orf56-203ENST00000473308 GRIN2AQ12879 1464 aa15.74■□□□□ 0.11
C1orf56-203ENST00000473308 TRIM41Q8WV44 630 aa15.74■□□□□ 0.11
C1orf56-203ENST00000473308 KIF27Q86VH2 1401 aa15.73■□□□□ 0.11
C1orf56-203ENST00000473308 IGF1RP08069 1367 aa15.71■□□□□ 0.11
C1orf56-203ENST00000473308 NUP160Q12769 1436 aa15.68■□□□□ 0.1
C1orf56-203ENST00000473308 CEP170Q5SW79 1584 aa15.66■□□□□ 0.1
C1orf56-203ENST00000473308 ARAP1Q96P48 1450 aa15.65■□□□□ 0.1
C1orf56-203ENST00000473308 CYB5RLQ6IPT4 315 aa15.64■□□□□ 0.09
C1orf56-203ENST00000473308 CUL7Q14999 1698 aa15.61■□□□□ 0.09
C1orf56-203ENST00000473308 CARMIL1Q5VZK9 1371 aa15.61■□□□□ 0.09
C1orf56-203ENST00000473308 RUSC2Q8N2Y8 1516 aa15.58■□□□□ 0.09
C1orf56-203ENST00000473308 SHROOM2Q13796 1616 aa15.56■□□□□ 0.08
C1orf56-203ENST00000473308 ERCC6L2Q5T890 1561 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms