RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 NISCHQ9Y2I1 1504 aa41.56■■■■■ 4.24
USP40-212ENST00000473191 CCDC180Q9P1Z9 1646 aa37.1■■■■□ 3.53
USP40-212ENST00000473191 ABCC9O60706 1549 aa36.98■■■■□ 3.51
USP40-212ENST00000473191 RB1CC1Q8TDY2 1594 aa35.19■■■■□ 3.22
USP40-212ENST00000473191 DCAF8L2P0C7V8 631 aa35.01■■■■□ 3.2
USP40-212ENST00000473191 NACADO15069 1562 aa35■■■■□ 3.19
USP40-212ENST00000473191 MYO15BQ96JP2 1530 aa34.57■■■■□ 3.12
USP40-212ENST00000473191 DNAJC5BQ9UF47 199 aa34.54■■■■□ 3.12
USP40-212ENST00000473191 UNC13AQ9UPW8 1703 aa34.53■■■■□ 3.12
USP40-212ENST00000473191 PABPN1Q86U42 306 aaKnown RBP eCLIP34.51■■■■□ 3.12
USP40-212ENST00000473191 ZCCHC6Q5VYS8 1495 aaKnown RBP34.51■■■■□ 3.11
USP40-212ENST00000473191 BICRAQ9NZM4 1560 aa34.28■■■■□ 3.08
USP40-212ENST00000473191 DCAF1Q9Y4B6 1507 aa34.26■■■■□ 3.08
USP40-212ENST00000473191 SCRIBQ14160 1630 aa33.95■■■■□ 3.03
USP40-212ENST00000473191 SHROOM4Q9ULL8 1493 aa33.62■■■□□ 2.97
USP40-212ENST00000473191 CC2D2AQ9P2K1 1620 aa33.39■■■□□ 2.94
USP40-212ENST00000473191 EIF4G1Q04637 1599 aaKnown RBP33.37■■■□□ 2.93
USP40-212ENST00000473191 CECR2Q9BXF3 1484 aa33.22■■■□□ 2.91
USP40-212ENST00000473191 SMARCA4P51532 1647 aa32.37■■■□□ 2.77
USP40-212ENST00000473191 NCAPD3P42695 1498 aa32.35■■■□□ 2.77
USP40-212ENST00000473191 ATAD2BQ9ULI0 1458 aa32.34■■■□□ 2.77
USP40-212ENST00000473191 BAZ1AQ9NRL2 1556 aaPredicted RBP32.19■■■□□ 2.74
USP40-212ENST00000473191 SMARCA2P51531 1590 aa32.17■■■□□ 2.74
USP40-212ENST00000473191 HMGXB3Q12766 1538 aa32.11■■■□□ 2.73
USP40-212ENST00000473191 MROH2BQ7Z745 1585 aa32.1■■■□□ 2.73
USP40-212ENST00000473191 PEG3Q9GZU2 1588 aa32.01■■■□□ 2.71
USP40-212ENST00000473191 BAZ1BQ9UIG0 1483 aaKnown RBP32■■■□□ 2.71
USP40-212ENST00000473191 NESP48681 1621 aa31.89■■■□□ 2.7
USP40-212ENST00000473191 ERCC6Q03468 1493 aa31.81■■■□□ 2.68
USP40-212ENST00000473191 WIZO95785 1651 aa31.74■■■□□ 2.67
USP40-212ENST00000473191 CUX2O14529 1486 aa31.62■■■□□ 2.65
USP40-212ENST00000473191 LAMC3Q9Y6N6 1575 aa31.56■■■□□ 2.64
USP40-212ENST00000473191 RSF1Q96T23 1441 aaPredicted RBP31.5■■■□□ 2.63
USP40-212ENST00000473191 THOC2Q8NI27 1593 aaKnown RBP31.44■■■□□ 2.62
USP40-212ENST00000473191 KIF21AQ7Z4S6 1674 aa31.44■■■□□ 2.62
USP40-212ENST00000473191 CADPSQ9ULU8 1353 aa31.39■■■□□ 2.62
USP40-212ENST00000473191 DNAJC5Q9H3Z4 198 aa31.35■■■□□ 2.61
USP40-212ENST00000473191 PDS5BQ9NTI5 1447 aa31.34■■■□□ 2.61
USP40-212ENST00000473191 TOP2AP11388 1531 aaKnown RBP31.27■■■□□ 2.6
USP40-212ENST00000473191 CFTRP13569 1480 aa31.1■■■□□ 2.57
USP40-212ENST00000473191 MRC2Q9UBG0 1479 aa31.1■■■□□ 2.57
USP40-212ENST00000473191 FANCD2Q9BXW9 1451 aa31.06■■■□□ 2.56
USP40-212ENST00000473191 WDR62O43379 1518 aa31.04■■■□□ 2.56
USP40-212ENST00000473191 CEP164Q9UPV0 1460 aa31.03■■■□□ 2.56
USP40-212ENST00000473191 CCDC88BA6NC98 1476 aa30.96■■■□□ 2.55
USP40-212ENST00000473191 URB2Q14146 1524 aaKnown RBP30.83■■■□□ 2.53
USP40-212ENST00000473191 PRDM2Q13029 1718 aa30.78■■■□□ 2.52
USP40-212ENST00000473191 TOPBP1Q92547 1522 aa30.52■■■□□ 2.48
USP40-212ENST00000473191 ZNF608Q9ULD9 1512 aaPredicted RBP30.43■■■□□ 2.46
USP40-212ENST00000473191 DNMBPQ6XZF7 1577 aa30.39■■■□□ 2.46
USP40-212ENST00000473191 IFT140Q96RY7 1462 aa30.38■■■□□ 2.45
USP40-212ENST00000473191 SUPT5HO00267 1087 aaKnown RBP30.35■■■□□ 2.45
USP40-212ENST00000473191 ABCC8Q09428 1581 aa30.32■■■□□ 2.45
USP40-212ENST00000473191 OSCARQ8IYS5 282 aa30.25■■■□□ 2.43
USP40-212ENST00000473191 TARBP1Q13395 1621 aaKnown RBP30.24■■■□□ 2.43
USP40-212ENST00000473191 POLA1P09884 1462 aaPredicted RBP30.23■■■□□ 2.43
USP40-212ENST00000473191 EIF4G3O43432 1585 aaKnown RBP30.23■■■□□ 2.43
USP40-212ENST00000473191 AQRO60306 1485 aaKnown RBP eCLIP30.18■■■□□ 2.42
USP40-212ENST00000473191 RAD54L2Q9Y4B4 1467 aa30.17■■■□□ 2.42
USP40-212ENST00000473191 TRIM41Q8WV44 630 aa30.16■■■□□ 2.42
USP40-212ENST00000473191 CUX1P39880 1505 aa30.13■■■□□ 2.41
USP40-212ENST00000473191 FGD5Q6ZNL6 1462 aa30.08■■■□□ 2.41
USP40-212ENST00000473191 SOGA1O94964 1423 aa30.06■■■□□ 2.4
USP40-212ENST00000473191 TDRD9Q8NDG6 1382 aaKnown RBP30.03■■■□□ 2.4
USP40-212ENST00000473191 CHD1O14646 1710 aa29.96■■■□□ 2.39
USP40-212ENST00000473191 RIMBP3CA6NJZ7 1639 aa29.91■■■□□ 2.38
USP40-212ENST00000473191 RIMBP3BA6NNM3 1639 aa29.91■■■□□ 2.38
USP40-212ENST00000473191 RIMBP3Q9UFD9 1639 aa29.91■■■□□ 2.38
USP40-212ENST00000473191 FBLN2P98095 1184 aa29.88■■■□□ 2.37
USP40-212ENST00000473191 WDR97A6NE52 1622 aa29.86■■■□□ 2.37
USP40-212ENST00000473191 SNAPC4Q5SXM2 1469 aa29.85■■■□□ 2.37
USP40-212ENST00000473191 ARHGEF11O15085 1522 aa29.82■■■□□ 2.36
USP40-212ENST00000473191 GRIN2BQ13224 1484 aa29.74■■■□□ 2.35
USP40-212ENST00000473191 ABCA10Q8WWZ4 1543 aa29.71■■■□□ 2.35
USP40-212ENST00000473191 SYNJ1O43426 1573 aa29.71■■■□□ 2.35
USP40-212ENST00000473191 PBRM1Q86U86 1689 aa29.7■■■□□ 2.35
USP40-212ENST00000473191 GAPVD1Q14C86 1478 aa29.7■■■□□ 2.35
USP40-212ENST00000473191 MAGI1Q96QZ7 1491 aaPredicted RBP29.69■■■□□ 2.34
USP40-212ENST00000473191 ABCA5Q8WWZ7 1642 aa29.67■■■□□ 2.34
USP40-212ENST00000473191 WRNQ14191 1432 aaPredicted RBP eCLIP29.67■■■□□ 2.34
USP40-212ENST00000473191 BIVM-ERCC5R4GMW8 1640 aa29.67■■■□□ 2.34
USP40-212ENST00000473191 TOP2BQ02880 1626 aa29.66■■■□□ 2.34
USP40-212ENST00000473191 CHMP7Q8WUX9 453 aaPredicted RBP29.65■■■□□ 2.34
USP40-212ENST00000473191 SYNJ2O15056 1496 aa29.61■■■□□ 2.33
USP40-212ENST00000473191 CLASP1Q7Z460 1538 aa29.61■■■□□ 2.33
USP40-212ENST00000473191 CYB5RLQ6IPT4 315 aa29.6■■■□□ 2.33
USP40-212ENST00000473191 ARAP1Q96P48 1450 aa29.58■■■□□ 2.33
USP40-212ENST00000473191 ADAMTS12P58397 1594 aa29.43■■■□□ 2.3
USP40-212ENST00000473191 GRIN2AQ12879 1464 aa29.39■■■□□ 2.3
USP40-212ENST00000473191 CEP170Q5SW79 1584 aa29.34■■■□□ 2.29
USP40-212ENST00000473191 ERICH3Q5RHP9 1530 aa29.31■■■□□ 2.28
USP40-212ENST00000473191 FHAD1B1AJZ9 1412 aa29.3■■■□□ 2.28
USP40-212ENST00000473191 NUP160Q12769 1436 aa29.28■■■□□ 2.28
USP40-212ENST00000473191 ERCC6L2Q5T890 1561 aa29.28■■■□□ 2.28
USP40-212ENST00000473191 TRHP20396 242 aaPredicted RBP29.15■■■□□ 2.26
USP40-212ENST00000473191 SHROOM2Q13796 1616 aa29.12■■■□□ 2.25
USP40-212ENST00000473191 IGF1RP08069 1367 aa29.07■■■□□ 2.24
USP40-212ENST00000473191 KIF27Q86VH2 1401 aa29.04■■■□□ 2.24
USP40-212ENST00000473191 RUSC2Q8N2Y8 1516 aa29.01■■■□□ 2.23
USP40-212ENST00000473191 PRG4Q92954 1404 aaPredicted RBP28.99■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms