RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 NISCHQ9Y2I1 1504 aa44.71■■■■■ 4.75
SMARCD3-209ENST00000472988 CCDC180Q9P1Z9 1646 aa39.34■■■■□ 3.89
SMARCD3-209ENST00000472988 ZCCHC6Q5VYS8 1495 aaKnown RBP37.5■■■■□ 3.59
SMARCD3-209ENST00000472988 ABCC9O60706 1549 aa37.45■■■■□ 3.59
SMARCD3-209ENST00000472988 DCAF1Q9Y4B6 1507 aa37■■■■□ 3.51
SMARCD3-209ENST00000472988 DCAF8L2P0C7V8 631 aa36.86■■■■□ 3.49
SMARCD3-209ENST00000472988 MYO15BQ96JP2 1530 aa36.73■■■■□ 3.47
SMARCD3-209ENST00000472988 NACADO15069 1562 aa36.65■■■■□ 3.46
SMARCD3-209ENST00000472988 RB1CC1Q8TDY2 1594 aa36.45■■■■□ 3.43
SMARCD3-209ENST00000472988 SHROOM4Q9ULL8 1493 aa36.04■■■■□ 3.36
SMARCD3-209ENST00000472988 SCRIBQ14160 1630 aa36.04■■■■□ 3.36
SMARCD3-209ENST00000472988 UNC13AQ9UPW8 1703 aa35.87■■■■□ 3.33
SMARCD3-209ENST00000472988 BICRAQ9NZM4 1560 aa35.39■■■■□ 3.26
SMARCD3-209ENST00000472988 PABPN1Q86U42 306 aaKnown RBP eCLIP35.12■■■■□ 3.21
SMARCD3-209ENST00000472988 CECR2Q9BXF3 1484 aa34.76■■■■□ 3.16
SMARCD3-209ENST00000472988 BAZ1AQ9NRL2 1556 aaPredicted RBP34.58■■■■□ 3.13
SMARCD3-209ENST00000472988 SMARCA4P51532 1647 aa34.53■■■■□ 3.12
SMARCD3-209ENST00000472988 MROH2BQ7Z745 1585 aa34.53■■■■□ 3.12
SMARCD3-209ENST00000472988 RSF1Q96T23 1441 aaPredicted RBP34.46■■■■□ 3.11
SMARCD3-209ENST00000472988 SUPT5HO00267 1087 aaKnown RBP34.38■■■■□ 3.09
SMARCD3-209ENST00000472988 EIF4G1Q04637 1599 aaKnown RBP34.34■■■■□ 3.09
SMARCD3-209ENST00000472988 WIZO95785 1651 aa34.28■■■■□ 3.08
SMARCD3-209ENST00000472988 PEG3Q9GZU2 1588 aa34.13■■■■□ 3.05
SMARCD3-209ENST00000472988 ATAD2BQ9ULI0 1458 aa34■■■■□ 3.03
SMARCD3-209ENST00000472988 SMARCA2P51531 1590 aa34■■■■□ 3.03
SMARCD3-209ENST00000472988 CC2D2AQ9P2K1 1620 aa33.96■■■■□ 3.03
SMARCD3-209ENST00000472988 TOP2AP11388 1531 aaKnown RBP33.9■■■■□ 3.02
SMARCD3-209ENST00000472988 BAZ1BQ9UIG0 1483 aaKnown RBP33.78■■■■□ 3
SMARCD3-209ENST00000472988 NCAPD3P42695 1498 aa33.77■■■■□ 3
SMARCD3-209ENST00000472988 HMGXB3Q12766 1538 aa33.76■■■■□ 3
SMARCD3-209ENST00000472988 CCDC88BA6NC98 1476 aa33.47■■■□□ 2.95
SMARCD3-209ENST00000472988 DNAJC5BQ9UF47 199 aa33.36■■■□□ 2.93
SMARCD3-209ENST00000472988 PRDM2Q13029 1718 aa32.94■■■□□ 2.86
SMARCD3-209ENST00000472988 CFTRP13569 1480 aa32.91■■■□□ 2.86
SMARCD3-209ENST00000472988 CADPSQ9ULU8 1353 aa32.84■■■□□ 2.85
SMARCD3-209ENST00000472988 LAMC3Q9Y6N6 1575 aa32.77■■■□□ 2.84
SMARCD3-209ENST00000472988 NESP48681 1621 aa32.76■■■□□ 2.83
SMARCD3-209ENST00000472988 CHIC1Q5VXU3 224 aa32.71■■■□□ 2.83
SMARCD3-209ENST00000472988 ABCC8Q09428 1581 aa32.67■■■□□ 2.82
SMARCD3-209ENST00000472988 FANCD2Q9BXW9 1451 aa32.52■■■□□ 2.8
SMARCD3-209ENST00000472988 KIF21AQ7Z4S6 1674 aa32.48■■■□□ 2.79
SMARCD3-209ENST00000472988 WRNQ14191 1432 aaPredicted RBP eCLIP32.45■■■□□ 2.79
SMARCD3-209ENST00000472988 SYNJ1O43426 1573 aa32.44■■■□□ 2.78
SMARCD3-209ENST00000472988 PDS5BQ9NTI5 1447 aa32.42■■■□□ 2.78
SMARCD3-209ENST00000472988 CEP164Q9UPV0 1460 aa32.37■■■□□ 2.77
SMARCD3-209ENST00000472988 TRIM41Q8WV44 630 aa32.37■■■□□ 2.77
SMARCD3-209ENST00000472988 BIVM-ERCC5R4GMW8 1640 aa32.36■■■□□ 2.77
SMARCD3-209ENST00000472988 CUX1P39880 1505 aa32.34■■■□□ 2.77
SMARCD3-209ENST00000472988 TOP2BQ02880 1626 aa32.33■■■□□ 2.77
SMARCD3-209ENST00000472988 DNMBPQ6XZF7 1577 aa32.2■■■□□ 2.75
SMARCD3-209ENST00000472988 URB2Q14146 1524 aaKnown RBP32.17■■■□□ 2.74
SMARCD3-209ENST00000472988 TOPBP1Q92547 1522 aa32.15■■■□□ 2.74
SMARCD3-209ENST00000472988 ERCC6Q03468 1493 aa32.13■■■□□ 2.73
SMARCD3-209ENST00000472988 MRC2Q9UBG0 1479 aa32.1■■■□□ 2.73
SMARCD3-209ENST00000472988 THOC2Q8NI27 1593 aaKnown RBP32.06■■■□□ 2.72
SMARCD3-209ENST00000472988 FGD5Q6ZNL6 1462 aa32.03■■■□□ 2.72
SMARCD3-209ENST00000472988 WDR62O43379 1518 aa32■■■□□ 2.71
SMARCD3-209ENST00000472988 POLA1P09884 1462 aaPredicted RBP31.94■■■□□ 2.7
SMARCD3-209ENST00000472988 SOGA1O94964 1423 aa31.89■■■□□ 2.7
SMARCD3-209ENST00000472988 WDR97A6NE52 1622 aa31.83■■■□□ 2.69
SMARCD3-209ENST00000472988 RUSC2Q8N2Y8 1516 aa31.83■■■□□ 2.69
SMARCD3-209ENST00000472988 RAD54L2Q9Y4B4 1467 aa31.81■■■□□ 2.68
SMARCD3-209ENST00000472988 FAM9AQ8IZU1 332 aaPredicted RBP31.76■■■□□ 2.67
SMARCD3-209ENST00000472988 TARBP1Q13395 1621 aaKnown RBP31.76■■■□□ 2.67
SMARCD3-209ENST00000472988 CUX2O14529 1486 aa31.74■■■□□ 2.67
SMARCD3-209ENST00000472988 EEA1Q15075 1411 aa31.74■■■□□ 2.67
SMARCD3-209ENST00000472988 ABCA10Q8WWZ4 1543 aa31.74■■■□□ 2.67
SMARCD3-209ENST00000472988 KIF27Q86VH2 1401 aa31.66■■■□□ 2.66
SMARCD3-209ENST00000472988 IFT140Q96RY7 1462 aa31.61■■■□□ 2.65
SMARCD3-209ENST00000472988 ABCA5Q8WWZ7 1642 aa31.61■■■□□ 2.65
SMARCD3-209ENST00000472988 CSRNP3Q8WYN3 585 aa31.53■■■□□ 2.64
SMARCD3-209ENST00000472988 TDRD9Q8NDG6 1382 aaKnown RBP31.49■■■□□ 2.63
SMARCD3-209ENST00000472988 ZNF608Q9ULD9 1512 aaPredicted RBP31.47■■■□□ 2.63
SMARCD3-209ENST00000472988 PBRM1Q86U86 1689 aa31.47■■■□□ 2.63
SMARCD3-209ENST00000472988 KIF21BO75037 1637 aa31.46■■■□□ 2.63
SMARCD3-209ENST00000472988 EIF4G3O43432 1585 aaKnown RBP31.44■■■□□ 2.62
SMARCD3-209ENST00000472988 GAPVD1Q14C86 1478 aa31.44■■■□□ 2.62
SMARCD3-209ENST00000472988 LOC105371045A0A1W2PR82 267 aa31.41■■■□□ 2.62
SMARCD3-209ENST00000472988 IGF1RP08069 1367 aa31.4■■■□□ 2.62
SMARCD3-209ENST00000472988 AQRO60306 1485 aaKnown RBP eCLIP31.39■■■□□ 2.61
SMARCD3-209ENST00000472988 ERICH3Q5RHP9 1530 aa31.37■■■□□ 2.61
SMARCD3-209ENST00000472988 PRXQ9BXM0 1461 aa31.37■■■□□ 2.61
SMARCD3-209ENST00000472988 CUL7Q14999 1698 aa31.36■■■□□ 2.61
SMARCD3-209ENST00000472988 EHMT2Q96KQ7 1210 aa31.32■■■□□ 2.6
SMARCD3-209ENST00000472988 GOLGA3Q08378 1498 aa31.3■■■□□ 2.6
SMARCD3-209ENST00000472988 RAPGEF2Q9Y4G8 1499 aa31.29■■■□□ 2.6
SMARCD3-209ENST00000472988 GRIN2BQ13224 1484 aa31.27■■■□□ 2.6
SMARCD3-209ENST00000472988 CARMIL1Q5VZK9 1371 aa31.23■■■□□ 2.59
SMARCD3-209ENST00000472988 ADAMTS12P58397 1594 aa31.22■■■□□ 2.59
SMARCD3-209ENST00000472988 SNAPC4Q5SXM2 1469 aa31.15■■■□□ 2.58
SMARCD3-209ENST00000472988 FHAD1B1AJZ9 1412 aa31.09■■■□□ 2.57
SMARCD3-209ENST00000472988 MAGI1Q96QZ7 1491 aaPredicted RBP31.09■■■□□ 2.57
SMARCD3-209ENST00000472988 TNIKQ9UKE5 1360 aa31.06■■■□□ 2.56
SMARCD3-209ENST00000472988 UBTFP17480 764 aaKnown RBP31.06■■■□□ 2.56
SMARCD3-209ENST00000472988 CTTNBP2Q8WZ74 1663 aa31■■■□□ 2.55
SMARCD3-209ENST00000472988 SYNJ2O15056 1496 aa30.96■■■□□ 2.55
SMARCD3-209ENST00000472988 GRIN2AQ12879 1464 aa30.92■■■□□ 2.54
SMARCD3-209ENST00000472988 CEP162Q5TB80 1403 aa30.9■■■□□ 2.54
SMARCD3-209ENST00000472988 CHD1O14646 1710 aa30.9■■■□□ 2.54
SMARCD3-209ENST00000472988 CEP170Q5SW79 1584 aa30.79■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms