RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 NISCHQ9Y2I1 1504 aa25.09■■□□□ 1.61
SMARCD3-208ENST00000472789 CCDC180Q9P1Z9 1646 aa22.2■■□□□ 1.15
SMARCD3-208ENST00000472789 ABCC9O60706 1549 aa22.17■■□□□ 1.14
SMARCD3-208ENST00000472789 DNAJC5BQ9UF47 199 aa21.14■□□□□ 0.97
SMARCD3-208ENST00000472789 DCAF8L2P0C7V8 631 aa21.12■□□□□ 0.97
SMARCD3-208ENST00000472789 RB1CC1Q8TDY2 1594 aa20.93■□□□□ 0.94
SMARCD3-208ENST00000472789 ZCCHC6Q5VYS8 1495 aaKnown RBP20.92■□□□□ 0.94
SMARCD3-208ENST00000472789 NACADO15069 1562 aa20.88■□□□□ 0.93
SMARCD3-208ENST00000472789 MYO15BQ96JP2 1530 aa20.73■□□□□ 0.91
SMARCD3-208ENST00000472789 DCAF1Q9Y4B6 1507 aa20.71■□□□□ 0.91
SMARCD3-208ENST00000472789 PABPN1Q86U42 306 aaKnown RBP eCLIP20.61■□□□□ 0.89
SMARCD3-208ENST00000472789 UNC13AQ9UPW8 1703 aa20.5■□□□□ 0.87
SMARCD3-208ENST00000472789 BICRAQ9NZM4 1560 aa20.39■□□□□ 0.85
SMARCD3-208ENST00000472789 SCRIBQ14160 1630 aa20.38■□□□□ 0.85
SMARCD3-208ENST00000472789 SHROOM4Q9ULL8 1493 aa20.06■□□□□ 0.8
SMARCD3-208ENST00000472789 CC2D2AQ9P2K1 1620 aa20.01■□□□□ 0.79
SMARCD3-208ENST00000472789 CECR2Q9BXF3 1484 aa19.99■□□□□ 0.79
SMARCD3-208ENST00000472789 EIF4G1Q04637 1599 aaKnown RBP19.88■□□□□ 0.77
SMARCD3-208ENST00000472789 DNAJC5Q9H3Z4 198 aa19.57■□□□□ 0.72
SMARCD3-208ENST00000472789 BAZ1AQ9NRL2 1556 aaPredicted RBP19.45■□□□□ 0.7
SMARCD3-208ENST00000472789 SMARCA4P51532 1647 aa19.45■□□□□ 0.7
SMARCD3-208ENST00000472789 MROH2BQ7Z745 1585 aa19.36■□□□□ 0.69
SMARCD3-208ENST00000472789 ATAD2BQ9ULI0 1458 aa19.32■□□□□ 0.68
SMARCD3-208ENST00000472789 SMARCA2P51531 1590 aa19.31■□□□□ 0.68
SMARCD3-208ENST00000472789 NCAPD3P42695 1498 aa19.26■□□□□ 0.67
SMARCD3-208ENST00000472789 BAZ1BQ9UIG0 1483 aaKnown RBP19.21■□□□□ 0.67
SMARCD3-208ENST00000472789 CUX2O14529 1486 aa19.2■□□□□ 0.66
SMARCD3-208ENST00000472789 PEG3Q9GZU2 1588 aa19.19■□□□□ 0.66
SMARCD3-208ENST00000472789 RSF1Q96T23 1441 aaPredicted RBP19.19■□□□□ 0.66
SMARCD3-208ENST00000472789 HMGXB3Q12766 1538 aa19.17■□□□□ 0.66
SMARCD3-208ENST00000472789 WIZO95785 1651 aa19.16■□□□□ 0.66
SMARCD3-208ENST00000472789 ERCC6Q03468 1493 aa19.12■□□□□ 0.65
SMARCD3-208ENST00000472789 NESP48681 1621 aa18.98■□□□□ 0.63
SMARCD3-208ENST00000472789 TOP2AP11388 1531 aaKnown RBP18.95■□□□□ 0.62
SMARCD3-208ENST00000472789 SUPT5HO00267 1087 aaKnown RBP18.95■□□□□ 0.62
SMARCD3-208ENST00000472789 THOC2Q8NI27 1593 aaKnown RBP18.83■□□□□ 0.6
SMARCD3-208ENST00000472789 CCDC88BA6NC98 1476 aa18.76■□□□□ 0.59
SMARCD3-208ENST00000472789 CADPSQ9ULU8 1353 aa18.75■□□□□ 0.59
SMARCD3-208ENST00000472789 LAMC3Q9Y6N6 1575 aa18.75■□□□□ 0.59
SMARCD3-208ENST00000472789 KIF21AQ7Z4S6 1674 aa18.7■□□□□ 0.58
SMARCD3-208ENST00000472789 PDS5BQ9NTI5 1447 aa18.66■□□□□ 0.58
SMARCD3-208ENST00000472789 CFTRP13569 1480 aa18.64■□□□□ 0.57
SMARCD3-208ENST00000472789 TRIM41Q8WV44 630 aa18.57■□□□□ 0.56
SMARCD3-208ENST00000472789 FANCD2Q9BXW9 1451 aa18.55■□□□□ 0.56
SMARCD3-208ENST00000472789 MRC2Q9UBG0 1479 aa18.52■□□□□ 0.55
SMARCD3-208ENST00000472789 CEP164Q9UPV0 1460 aa18.52■□□□□ 0.55
SMARCD3-208ENST00000472789 WDR62O43379 1518 aa18.49■□□□□ 0.55
SMARCD3-208ENST00000472789 PRDM2Q13029 1718 aa18.46■□□□□ 0.55
SMARCD3-208ENST00000472789 URB2Q14146 1524 aaKnown RBP18.33■□□□□ 0.53
SMARCD3-208ENST00000472789 OSCARQ8IYS5 282 aa18.27■□□□□ 0.52
SMARCD3-208ENST00000472789 TOPBP1Q92547 1522 aa18.25■□□□□ 0.51
SMARCD3-208ENST00000472789 ABCC8Q09428 1581 aa18.24■□□□□ 0.51
SMARCD3-208ENST00000472789 DNMBPQ6XZF7 1577 aa18.23■□□□□ 0.51
SMARCD3-208ENST00000472789 CUX1P39880 1505 aa18.16■□□□□ 0.5
SMARCD3-208ENST00000472789 WRNQ14191 1432 aaPredicted RBP eCLIP18.12■□□□□ 0.49
SMARCD3-208ENST00000472789 IFT140Q96RY7 1462 aa18.11■□□□□ 0.49
SMARCD3-208ENST00000472789 POLA1P09884 1462 aaPredicted RBP18.1■□□□□ 0.49
SMARCD3-208ENST00000472789 FGD5Q6ZNL6 1462 aa18.1■□□□□ 0.49
SMARCD3-208ENST00000472789 RIMBP3CA6NJZ7 1639 aa18.09■□□□□ 0.49
SMARCD3-208ENST00000472789 RIMBP3BA6NNM3 1639 aa18.09■□□□□ 0.49
SMARCD3-208ENST00000472789 RIMBP3Q9UFD9 1639 aa18.09■□□□□ 0.49
SMARCD3-208ENST00000472789 ZNF608Q9ULD9 1512 aaPredicted RBP18.07■□□□□ 0.48
SMARCD3-208ENST00000472789 SOGA1O94964 1423 aa18.06■□□□□ 0.48
SMARCD3-208ENST00000472789 RAD54L2Q9Y4B4 1467 aa18.06■□□□□ 0.48
SMARCD3-208ENST00000472789 SYNJ1O43426 1573 aa18.04■□□□□ 0.48
SMARCD3-208ENST00000472789 TOP2BQ02880 1626 aa18.01■□□□□ 0.47
SMARCD3-208ENST00000472789 ARHGEF11O15085 1522 aa18■□□□□ 0.47
SMARCD3-208ENST00000472789 TARBP1Q13395 1621 aaKnown RBP18■□□□□ 0.47
SMARCD3-208ENST00000472789 BIVM-ERCC5R4GMW8 1640 aa18■□□□□ 0.47
SMARCD3-208ENST00000472789 TDRD9Q8NDG6 1382 aaKnown RBP17.97■□□□□ 0.47
SMARCD3-208ENST00000472789 AQRO60306 1485 aaKnown RBP eCLIP17.96■□□□□ 0.47
SMARCD3-208ENST00000472789 EIF4G3O43432 1585 aaKnown RBP17.94■□□□□ 0.46
SMARCD3-208ENST00000472789 ABCA10Q8WWZ4 1543 aa17.9■□□□□ 0.46
SMARCD3-208ENST00000472789 CYB5RLQ6IPT4 315 aa17.89■□□□□ 0.45
SMARCD3-208ENST00000472789 WDR97A6NE52 1622 aa17.87■□□□□ 0.45
SMARCD3-208ENST00000472789 GAPVD1Q14C86 1478 aa17.85■□□□□ 0.45
SMARCD3-208ENST00000472789 CHD1O14646 1710 aa17.84■□□□□ 0.45
SMARCD3-208ENST00000472789 FBLN2P98095 1184 aa17.83■□□□□ 0.44
SMARCD3-208ENST00000472789 GRIN2BQ13224 1484 aa17.82■□□□□ 0.44
SMARCD3-208ENST00000472789 ARAP1Q96P48 1450 aa17.82■□□□□ 0.44
SMARCD3-208ENST00000472789 ABCA5Q8WWZ7 1642 aa17.8■□□□□ 0.44
SMARCD3-208ENST00000472789 SNAPC4Q5SXM2 1469 aa17.79■□□□□ 0.44
SMARCD3-208ENST00000472789 TRHP20396 242 aaPredicted RBP17.77■□□□□ 0.44
SMARCD3-208ENST00000472789 PBRM1Q86U86 1689 aa17.76■□□□□ 0.43
SMARCD3-208ENST00000472789 KIF27Q86VH2 1401 aa17.74■□□□□ 0.43
SMARCD3-208ENST00000472789 CHMP7Q8WUX9 453 aaPredicted RBP17.74■□□□□ 0.43
SMARCD3-208ENST00000472789 MAGI1Q96QZ7 1491 aaPredicted RBP17.74■□□□□ 0.43
SMARCD3-208ENST00000472789 CHIC1Q5VXU3 224 aa17.69■□□□□ 0.42
SMARCD3-208ENST00000472789 SYNJ2O15056 1496 aa17.68■□□□□ 0.42
SMARCD3-208ENST00000472789 ERICH3Q5RHP9 1530 aa17.67■□□□□ 0.42
SMARCD3-208ENST00000472789 CLASP1Q7Z460 1538 aa17.65■□□□□ 0.42
SMARCD3-208ENST00000472789 FHAD1B1AJZ9 1412 aa17.64■□□□□ 0.42
SMARCD3-208ENST00000472789 ADAMTS12P58397 1594 aa17.64■□□□□ 0.41
SMARCD3-208ENST00000472789 IGF1RP08069 1367 aa17.63■□□□□ 0.41
SMARCD3-208ENST00000472789 RUSC2Q8N2Y8 1516 aa17.61■□□□□ 0.41
SMARCD3-208ENST00000472789 GRIN2AQ12879 1464 aa17.58■□□□□ 0.41
SMARCD3-208ENST00000472789 CARMIL1Q5VZK9 1371 aa17.55■□□□□ 0.4
SMARCD3-208ENST00000472789 CUL7Q14999 1698 aa17.55■□□□□ 0.4
SMARCD3-208ENST00000472789 FAM9AQ8IZU1 332 aaPredicted RBP17.54■□□□□ 0.4
SMARCD3-208ENST00000472789 CEP170Q5SW79 1584 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms