RNA–Protein interactions for RNA: ENST00000472696.1

EPHA4-212, Transcript of EPH receptor A4, humanhuman

TSL 4

Gene EPHA4, Length 531 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-212ENST00000472696 NISCHQ9Y2I1 1504 aa13.69□□□□□ -0.22
EPHA4-212ENST00000472696 CCDC180Q9P1Z9 1646 aa12.11□□□□□ -0.47
EPHA4-212ENST00000472696 ABCC9O60706 1549 aa11.47□□□□□ -0.57
EPHA4-212ENST00000472696 ZCCHC6Q5VYS8 1495 aaKnown RBP11.46□□□□□ -0.57
EPHA4-212ENST00000472696 DCAF1Q9Y4B6 1507 aa11.44□□□□□ -0.58
EPHA4-212ENST00000472696 MYO15BQ96JP2 1530 aa11.42□□□□□ -0.58
EPHA4-212ENST00000472696 NACADO15069 1562 aa11.34□□□□□ -0.59
EPHA4-212ENST00000472696 RB1CC1Q8TDY2 1594 aa11.27□□□□□ -0.61
EPHA4-212ENST00000472696 DCAF8L2P0C7V8 631 aa11.24□□□□□ -0.61
EPHA4-212ENST00000472696 UNC13AQ9UPW8 1703 aa10.95□□□□□ -0.66
EPHA4-212ENST00000472696 SCRIBQ14160 1630 aa10.94□□□□□ -0.66
EPHA4-212ENST00000472696 SHROOM4Q9ULL8 1493 aa10.92□□□□□ -0.66
EPHA4-212ENST00000472696 BICRAQ9NZM4 1560 aa10.85□□□□□ -0.67
EPHA4-212ENST00000472696 PABPN1Q86U42 306 aaKnown RBP eCLIP10.74□□□□□ -0.69
EPHA4-212ENST00000472696 BAZ1AQ9NRL2 1556 aaPredicted RBP10.63□□□□□ -0.71
EPHA4-212ENST00000472696 AEBP2Q6ZN18 517 aaPredicted RBP10.57□□□□□ -0.72
EPHA4-212ENST00000472696 EIF4G1Q04637 1599 aaKnown RBP10.56□□□□□ -0.72
EPHA4-212ENST00000472696 CECR2Q9BXF3 1484 aa10.55□□□□□ -0.72
EPHA4-212ENST00000472696 SMARCA4P51532 1647 aa10.55□□□□□ -0.72
EPHA4-212ENST00000472696 PEG3Q9GZU2 1588 aa10.52□□□□□ -0.72
EPHA4-212ENST00000472696 RSF1Q96T23 1441 aaPredicted RBP10.5□□□□□ -0.73
EPHA4-212ENST00000472696 MROH2BQ7Z745 1585 aa10.5□□□□□ -0.73
EPHA4-212ENST00000472696 SMARCA2P51531 1590 aa10.49□□□□□ -0.73
EPHA4-212ENST00000472696 NCAPD3P42695 1498 aa10.45□□□□□ -0.74
EPHA4-212ENST00000472696 ATAD2BQ9ULI0 1458 aa10.45□□□□□ -0.74
EPHA4-212ENST00000472696 CC2D2AQ9P2K1 1620 aa10.44□□□□□ -0.74
EPHA4-212ENST00000472696 HMGXB3Q12766 1538 aa10.42□□□□□ -0.74
EPHA4-212ENST00000472696 WIZO95785 1651 aa10.39□□□□□ -0.75
EPHA4-212ENST00000472696 BAZ1BQ9UIG0 1483 aaKnown RBP10.37□□□□□ -0.75
EPHA4-212ENST00000472696 TOP2AP11388 1531 aaKnown RBP10.36□□□□□ -0.75
EPHA4-212ENST00000472696 SUPT5HO00267 1087 aaKnown RBP10.35□□□□□ -0.75
EPHA4-212ENST00000472696 DNAJC5BQ9UF47 199 aa10.26□□□□□ -0.77
EPHA4-212ENST00000472696 CCDC88BA6NC98 1476 aa10.21□□□□□ -0.78
EPHA4-212ENST00000472696 CADPSQ9ULU8 1353 aa10.14□□□□□ -0.79
EPHA4-212ENST00000472696 LAMC3Q9Y6N6 1575 aa10.14□□□□□ -0.79
EPHA4-212ENST00000472696 CFTRP13569 1480 aa10.13□□□□□ -0.79
EPHA4-212ENST00000472696 CHIC1Q5VXU3 224 aa10.1□□□□□ -0.79
EPHA4-212ENST00000472696 PRDM2Q13029 1718 aa10.09□□□□□ -0.79
EPHA4-212ENST00000472696 PDS5BQ9NTI5 1447 aa10.07□□□□□ -0.8
EPHA4-212ENST00000472696 FANCD2Q9BXW9 1451 aa9.99□□□□□ -0.81
EPHA4-212ENST00000472696 ABCC8Q09428 1581 aa9.98□□□□□ -0.81
EPHA4-212ENST00000472696 NESP48681 1621 aa9.98□□□□□ -0.81
EPHA4-212ENST00000472696 CEP164Q9UPV0 1460 aa9.97□□□□□ -0.81
EPHA4-212ENST00000472696 ERCC6Q03468 1493 aa9.92□□□□□ -0.82
EPHA4-212ENST00000472696 WRNQ14191 1432 aaPredicted RBP eCLIP9.92□□□□□ -0.82
EPHA4-212ENST00000472696 KIF21AQ7Z4S6 1674 aa9.91□□□□□ -0.82
EPHA4-212ENST00000472696 MRC2Q9UBG0 1479 aa9.9□□□□□ -0.83
EPHA4-212ENST00000472696 DNMBPQ6XZF7 1577 aa9.88□□□□□ -0.83
EPHA4-212ENST00000472696 TOP2BQ02880 1626 aa9.88□□□□□ -0.83
EPHA4-212ENST00000472696 BIVM-ERCC5R4GMW8 1640 aa9.88□□□□□ -0.83
EPHA4-212ENST00000472696 WDR62O43379 1518 aa9.87□□□□□ -0.83
EPHA4-212ENST00000472696 TRIM41Q8WV44 630 aa9.85□□□□□ -0.83
EPHA4-212ENST00000472696 TOPBP1Q92547 1522 aa9.85□□□□□ -0.83
EPHA4-212ENST00000472696 THOC2Q8NI27 1593 aaKnown RBP9.84□□□□□ -0.83
EPHA4-212ENST00000472696 CUX1P39880 1505 aa9.84□□□□□ -0.83
EPHA4-212ENST00000472696 URB2Q14146 1524 aaKnown RBP9.84□□□□□ -0.83
EPHA4-212ENST00000472696 SYNJ1O43426 1573 aa9.82□□□□□ -0.84
EPHA4-212ENST00000472696 SLC24A1O60721 1099 aa9.81□□□□□ -0.84
EPHA4-212ENST00000472696 CUX2O14529 1486 aa9.79□□□□□ -0.84
EPHA4-212ENST00000472696 WDR97A6NE52 1622 aa9.78□□□□□ -0.84
EPHA4-212ENST00000472696 POLA1P09884 1462 aaPredicted RBP9.78□□□□□ -0.84
EPHA4-212ENST00000472696 FGD5Q6ZNL6 1462 aa9.78□□□□□ -0.84
EPHA4-212ENST00000472696 IFT140Q96RY7 1462 aa9.77□□□□□ -0.85
EPHA4-212ENST00000472696 SOGA1O94964 1423 aa9.76□□□□□ -0.85
EPHA4-212ENST00000472696 EEA1Q15075 1411 aa9.76□□□□□ -0.85
EPHA4-212ENST00000472696 ABCA10Q8WWZ4 1543 aa9.75□□□□□ -0.85
EPHA4-212ENST00000472696 TARBP1Q13395 1621 aaKnown RBP9.73□□□□□ -0.85
EPHA4-212ENST00000472696 KIF27Q86VH2 1401 aa9.72□□□□□ -0.85
EPHA4-212ENST00000472696 RAD54L2Q9Y4B4 1467 aa9.68□□□□□ -0.86
EPHA4-212ENST00000472696 ERICH3Q5RHP9 1530 aa9.66□□□□□ -0.86
EPHA4-212ENST00000472696 ABCA5Q8WWZ7 1642 aa9.66□□□□□ -0.86
EPHA4-212ENST00000472696 GAPVD1Q14C86 1478 aa9.66□□□□□ -0.86
EPHA4-212ENST00000472696 CSRNP3Q8WYN3 585 aa9.64□□□□□ -0.87
EPHA4-212ENST00000472696 GRIN2BQ13224 1484 aa9.64□□□□□ -0.87
EPHA4-212ENST00000472696 TDRD9Q8NDG6 1382 aaKnown RBP9.63□□□□□ -0.87
EPHA4-212ENST00000472696 CUL7Q14999 1698 aa9.62□□□□□ -0.87
EPHA4-212ENST00000472696 EIF4G3O43432 1585 aaKnown RBP9.62□□□□□ -0.87
EPHA4-212ENST00000472696 IGF1RP08069 1367 aa9.62□□□□□ -0.87
EPHA4-212ENST00000472696 ZNF608Q9ULD9 1512 aaPredicted RBP9.61□□□□□ -0.87
EPHA4-212ENST00000472696 AQRO60306 1485 aaKnown RBP eCLIP9.6□□□□□ -0.87
EPHA4-212ENST00000472696 MAGI1Q96QZ7 1491 aaPredicted RBP9.6□□□□□ -0.87
EPHA4-212ENST00000472696 PBRM1Q86U86 1689 aa9.6□□□□□ -0.87
EPHA4-212ENST00000472696 RUSC2Q8N2Y8 1516 aa9.58□□□□□ -0.88
EPHA4-212ENST00000472696 PRXQ9BXM0 1461 aa9.58□□□□□ -0.88
EPHA4-212ENST00000472696 FHAD1B1AJZ9 1412 aa9.57□□□□□ -0.88
EPHA4-212ENST00000472696 KIF21BO75037 1637 aa9.57□□□□□ -0.88
EPHA4-212ENST00000472696 CARMIL1Q5VZK9 1371 aa9.57□□□□□ -0.88
EPHA4-212ENST00000472696 RAPGEF2Q9Y4G8 1499 aa9.56□□□□□ -0.88
EPHA4-212ENST00000472696 SYNJ2O15056 1496 aa9.54□□□□□ -0.88
EPHA4-212ENST00000472696 ADAMTS12P58397 1594 aa9.54□□□□□ -0.88
EPHA4-212ENST00000472696 GOLGA3Q08378 1498 aa9.53□□□□□ -0.88
EPHA4-212ENST00000472696 SNAPC4Q5SXM2 1469 aa9.53□□□□□ -0.88
EPHA4-212ENST00000472696 FAM9AQ8IZU1 332 aaPredicted RBP9.52□□□□□ -0.89
EPHA4-212ENST00000472696 CHMP7Q8WUX9 453 aaPredicted RBP9.51□□□□□ -0.89
EPHA4-212ENST00000472696 GRIN2AQ12879 1464 aa9.5□□□□□ -0.89
EPHA4-212ENST00000472696 TNIKQ9UKE5 1360 aa9.48□□□□□ -0.89
EPHA4-212ENST00000472696 NUP160Q12769 1436 aa9.46□□□□□ -0.9
EPHA4-212ENST00000472696 UBTFP17480 764 aaKnown RBP9.45□□□□□ -0.9
EPHA4-212ENST00000472696 KIAA0586Q9BVV6 1533 aa9.45□□□□□ -0.9
EPHA4-212ENST00000472696 CTTNBP2Q8WZ74 1663 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms