RNA–Protein interactions for RNA: ENST00000472659.1

PKD1-209, Transcript of polycystin 1, transient receptor potential channel interacting, humanhuman

TSL 3

Gene PKD1, Length 661 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKD1-209ENST00000472659 NISCHQ9Y2I1 1504 aa45.93■■■■■ 4.94
PKD1-209ENST00000472659 CCDC180Q9P1Z9 1646 aa40.98■■■■■ 4.15
PKD1-209ENST00000472659 ABCC9O60706 1549 aa40.27■■■■■ 4.04
PKD1-209ENST00000472659 RB1CC1Q8TDY2 1594 aa38.65■■■■□ 3.78
PKD1-209ENST00000472659 NACADO15069 1562 aa38.56■■■■□ 3.76
PKD1-209ENST00000472659 MYO15BQ96JP2 1530 aa38.29■■■■□ 3.72
PKD1-209ENST00000472659 DCAF8L2P0C7V8 631 aa38.27■■■■□ 3.72
PKD1-209ENST00000472659 ZCCHC6Q5VYS8 1495 aaKnown RBP38.23■■■■□ 3.71
PKD1-209ENST00000472659 DCAF1Q9Y4B6 1507 aa38.02■■■■□ 3.68
PKD1-209ENST00000472659 UNC13AQ9UPW8 1703 aa37.82■■■■□ 3.65
PKD1-209ENST00000472659 DNAJC5BQ9UF47 199 aa37.69■■■■□ 3.62
PKD1-209ENST00000472659 BICRAQ9NZM4 1560 aa37.56■■■■□ 3.6
PKD1-209ENST00000472659 PABPN1Q86U42 306 aaKnown RBP eCLIP37.54■■■■□ 3.6
PKD1-209ENST00000472659 SCRIBQ14160 1630 aa37.32■■■■□ 3.57
PKD1-209ENST00000472659 SHROOM4Q9ULL8 1493 aa37.13■■■■□ 3.54
PKD1-209ENST00000472659 EIF4G1Q04637 1599 aaKnown RBP36.56■■■■□ 3.44
PKD1-209ENST00000472659 CC2D2AQ9P2K1 1620 aa36.45■■■■□ 3.43
PKD1-209ENST00000472659 CECR2Q9BXF3 1484 aa36.25■■■■□ 3.39
PKD1-209ENST00000472659 SMARCA4P51532 1647 aa35.71■■■■□ 3.31
PKD1-209ENST00000472659 BAZ1AQ9NRL2 1556 aaPredicted RBP35.61■■■■□ 3.29
PKD1-209ENST00000472659 NCAPD3P42695 1498 aa35.59■■■■□ 3.29
PKD1-209ENST00000472659 ATAD2BQ9ULI0 1458 aa35.56■■■■□ 3.28
PKD1-209ENST00000472659 SMARCA2P51531 1590 aa35.5■■■■□ 3.27
PKD1-209ENST00000472659 HMGXB3Q12766 1538 aa35.42■■■■□ 3.26
PKD1-209ENST00000472659 PEG3Q9GZU2 1588 aa35.4■■■■□ 3.26
PKD1-209ENST00000472659 MROH2BQ7Z745 1585 aa35.39■■■■□ 3.26
PKD1-209ENST00000472659 BAZ1BQ9UIG0 1483 aaKnown RBP35.23■■■■□ 3.23
PKD1-209ENST00000472659 WIZO95785 1651 aa34.99■■■■□ 3.19
PKD1-209ENST00000472659 RSF1Q96T23 1441 aaPredicted RBP34.88■■■■□ 3.17
PKD1-209ENST00000472659 NESP48681 1621 aa34.81■■■■□ 3.16
PKD1-209ENST00000472659 CUX2O14529 1486 aa34.75■■■■□ 3.15
PKD1-209ENST00000472659 ERCC6Q03468 1493 aa34.71■■■■□ 3.15
PKD1-209ENST00000472659 LAMC3Q9Y6N6 1575 aa34.69■■■■□ 3.14
PKD1-209ENST00000472659 DNAJC5Q9H3Z4 198 aa34.63■■■■□ 3.13
PKD1-209ENST00000472659 TOP2AP11388 1531 aaKnown RBP34.61■■■■□ 3.13
PKD1-209ENST00000472659 CADPSQ9ULU8 1353 aa34.5■■■■□ 3.11
PKD1-209ENST00000472659 PDS5BQ9NTI5 1447 aa34.42■■■■□ 3.1
PKD1-209ENST00000472659 KIF21AQ7Z4S6 1674 aa34.4■■■■□ 3.1
PKD1-209ENST00000472659 THOC2Q8NI27 1593 aaKnown RBP34.39■■■■□ 3.1
PKD1-209ENST00000472659 CFTRP13569 1480 aa34.28■■■■□ 3.08
PKD1-209ENST00000472659 CCDC88BA6NC98 1476 aa34.18■■■■□ 3.06
PKD1-209ENST00000472659 FANCD2Q9BXW9 1451 aa34.12■■■■□ 3.05
PKD1-209ENST00000472659 MRC2Q9UBG0 1479 aa34.12■■■■□ 3.05
PKD1-209ENST00000472659 CEP164Q9UPV0 1460 aa34.1■■■■□ 3.05
PKD1-209ENST00000472659 WDR62O43379 1518 aa34.05■■■■□ 3.04
PKD1-209ENST00000472659 PRDM2Q13029 1718 aa34.01■■■■□ 3.04
PKD1-209ENST00000472659 URB2Q14146 1524 aaKnown RBP33.83■■■■□ 3.01
PKD1-209ENST00000472659 SUPT5HO00267 1087 aaKnown RBP33.64■■■□□ 2.98
PKD1-209ENST00000472659 TOPBP1Q92547 1522 aa33.55■■■□□ 2.96
PKD1-209ENST00000472659 DNMBPQ6XZF7 1577 aa33.51■■■□□ 2.95
PKD1-209ENST00000472659 ABCC8Q09428 1581 aa33.5■■■□□ 2.95
PKD1-209ENST00000472659 IFT140Q96RY7 1462 aa33.39■■■□□ 2.94
PKD1-209ENST00000472659 ZNF608Q9ULD9 1512 aaPredicted RBP33.28■■■□□ 2.92
PKD1-209ENST00000472659 POLA1P09884 1462 aaPredicted RBP33.25■■■□□ 2.91
PKD1-209ENST00000472659 TARBP1Q13395 1621 aaKnown RBP33.24■■■□□ 2.91
PKD1-209ENST00000472659 CUX1P39880 1505 aa33.23■■■□□ 2.91
PKD1-209ENST00000472659 EIF4G3O43432 1585 aaKnown RBP33.17■■■□□ 2.9
PKD1-209ENST00000472659 OSCARQ8IYS5 282 aa33.16■■■□□ 2.9
PKD1-209ENST00000472659 FGD5Q6ZNL6 1462 aa33.13■■■□□ 2.89
PKD1-209ENST00000472659 RAD54L2Q9Y4B4 1467 aa33.09■■■□□ 2.89
PKD1-209ENST00000472659 SOGA1O94964 1423 aa33.06■■■□□ 2.88
PKD1-209ENST00000472659 AQRO60306 1485 aaKnown RBP eCLIP33.03■■■□□ 2.886e-7■■■■■ 34.9
PKD1-209ENST00000472659 WDR97A6NE52 1622 aa32.97■■■□□ 2.87
PKD1-209ENST00000472659 TDRD9Q8NDG6 1382 aaKnown RBP32.91■■■□□ 2.86
PKD1-209ENST00000472659 TRIM41Q8WV44 630 aa32.89■■■□□ 2.86
PKD1-209ENST00000472659 BIVM-ERCC5R4GMW8 1640 aa32.88■■■□□ 2.85
PKD1-209ENST00000472659 TOP2BQ02880 1626 aa32.87■■■□□ 2.85
PKD1-209ENST00000472659 WRNQ14191 1432 aaPredicted RBP eCLIP32.86■■■□□ 2.85
PKD1-209ENST00000472659 SYNJ1O43426 1573 aa32.86■■■□□ 2.85
PKD1-209ENST00000472659 ABCA10Q8WWZ4 1543 aa32.81■■■□□ 2.84
PKD1-209ENST00000472659 CHD1O14646 1710 aa32.78■■■□□ 2.84
PKD1-209ENST00000472659 SNAPC4Q5SXM2 1469 aa32.74■■■□□ 2.83
PKD1-209ENST00000472659 GRIN2BQ13224 1484 aa32.74■■■□□ 2.83
PKD1-209ENST00000472659 ABCA5Q8WWZ7 1642 aa32.73■■■□□ 2.83
PKD1-209ENST00000472659 GAPVD1Q14C86 1478 aa32.7■■■□□ 2.83
PKD1-209ENST00000472659 MAGI1Q96QZ7 1491 aaPredicted RBP32.7■■■□□ 2.83
PKD1-209ENST00000472659 PBRM1Q86U86 1689 aa32.69■■■□□ 2.82
PKD1-209ENST00000472659 RIMBP3CA6NJZ7 1639 aa32.6■■■□□ 2.81
PKD1-209ENST00000472659 RIMBP3BA6NNM3 1639 aa32.6■■■□□ 2.81
PKD1-209ENST00000472659 RIMBP3Q9UFD9 1639 aa32.6■■■□□ 2.81
PKD1-209ENST00000472659 SYNJ2O15056 1496 aa32.57■■■□□ 2.8
PKD1-209ENST00000472659 FBLN2P98095 1184 aa32.57■■■□□ 2.8
PKD1-209ENST00000472659 ARHGEF11O15085 1522 aa32.55■■■□□ 2.8
PKD1-209ENST00000472659 CHMP7Q8WUX9 453 aaPredicted RBP32.48■■■□□ 2.79
PKD1-209ENST00000472659 CLASP1Q7Z460 1538 aa32.46■■■□□ 2.79
PKD1-209ENST00000472659 ADAMTS12P58397 1594 aa32.44■■■□□ 2.78
PKD1-209ENST00000472659 ERICH3Q5RHP9 1530 aa32.41■■■□□ 2.78
PKD1-209ENST00000472659 GRIN2AQ12879 1464 aa32.34■■■□□ 2.77
PKD1-209ENST00000472659 FHAD1B1AJZ9 1412 aa32.32■■■□□ 2.76
PKD1-209ENST00000472659 CYB5RLQ6IPT4 315 aa32.28■■■□□ 2.76
PKD1-209ENST00000472659 ARAP1Q96P48 1450 aa32.24■■■□□ 2.75
PKD1-209ENST00000472659 NUP160Q12769 1436 aa32.23■■■□□ 2.75
PKD1-209ENST00000472659 CEP170Q5SW79 1584 aa32.21■■■□□ 2.75
PKD1-209ENST00000472659 KIF27Q86VH2 1401 aa32.18■■■□□ 2.74
PKD1-209ENST00000472659 IGF1RP08069 1367 aa32.1■■■□□ 2.73
PKD1-209ENST00000472659 CUL7Q14999 1698 aa32.07■■■□□ 2.72
PKD1-209ENST00000472659 SHROOM2Q13796 1616 aa32.04■■■□□ 2.72
PKD1-209ENST00000472659 ERCC6L2Q5T890 1561 aa31.98■■■□□ 2.71
PKD1-209ENST00000472659 RUSC2Q8N2Y8 1516 aa31.97■■■□□ 2.71
PKD1-209ENST00000472659 CARMIL1Q5VZK9 1371 aa31.88■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms