RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 NISCHQ9Y2I1 1504 aa29.35■■■□□ 2.29
SYNE1-221ENST00000472563 CCDC180Q9P1Z9 1646 aa26.08■■□□□ 1.77
SYNE1-221ENST00000472563 ABCC9O60706 1549 aa25.85■■□□□ 1.73
SYNE1-221ENST00000472563 RB1CC1Q8TDY2 1594 aa24.73■■□□□ 1.55
SYNE1-221ENST00000472563 DCAF8L2P0C7V8 631 aa24.68■■□□□ 1.54
SYNE1-221ENST00000472563 NACADO15069 1562 aa24.67■■□□□ 1.54
SYNE1-221ENST00000472563 MYO15BQ96JP2 1530 aa24.51■■□□□ 1.51
SYNE1-221ENST00000472563 ZCCHC6Q5VYS8 1495 aaKnown RBP24.39■■□□□ 1.5
SYNE1-221ENST00000472563 DCAF1Q9Y4B6 1507 aa24.3■■□□□ 1.48
SYNE1-221ENST00000472563 PABPN1Q86U42 306 aaKnown RBP eCLIP24.19■■□□□ 1.46
SYNE1-221ENST00000472563 DNAJC5BQ9UF47 199 aa24.02■■□□□ 1.44
SYNE1-221ENST00000472563 BICRAQ9NZM4 1560 aa23.99■■□□□ 1.43
SYNE1-221ENST00000472563 UNC13AQ9UPW8 1703 aa23.96■■□□□ 1.43
SYNE1-221ENST00000472563 SCRIBQ14160 1630 aa23.81■■□□□ 1.4
SYNE1-221ENST00000472563 SHROOM4Q9ULL8 1493 aa23.79■■□□□ 1.4
SYNE1-221ENST00000472563 EIF4G1Q04637 1599 aaKnown RBP23.38■■□□□ 1.33
SYNE1-221ENST00000472563 CC2D2AQ9P2K1 1620 aa23.31■■□□□ 1.32
SYNE1-221ENST00000472563 CECR2Q9BXF3 1484 aa23.28■■□□□ 1.32
SYNE1-221ENST00000472563 NCAPD3P42695 1498 aa22.84■■□□□ 1.25
SYNE1-221ENST00000472563 ATAD2BQ9ULI0 1458 aa22.79■■□□□ 1.24
SYNE1-221ENST00000472563 SMARCA4P51532 1647 aa22.76■■□□□ 1.23
SYNE1-221ENST00000472563 BAZ1AQ9NRL2 1556 aaPredicted RBP22.76■■□□□ 1.23
SYNE1-221ENST00000472563 SMARCA2P51531 1590 aa22.71■■□□□ 1.23
SYNE1-221ENST00000472563 HMGXB3Q12766 1538 aa22.62■■□□□ 1.21
SYNE1-221ENST00000472563 MROH2BQ7Z745 1585 aa22.61■■□□□ 1.21
SYNE1-221ENST00000472563 PEG3Q9GZU2 1588 aa22.59■■□□□ 1.21
SYNE1-221ENST00000472563 BAZ1BQ9UIG0 1483 aaKnown RBP22.56■■□□□ 1.2
SYNE1-221ENST00000472563 RSF1Q96T23 1441 aaPredicted RBP22.32■■□□□ 1.16
SYNE1-221ENST00000472563 ERCC6Q03468 1493 aa22.3■■□□□ 1.16
SYNE1-221ENST00000472563 NESP48681 1621 aa22.29■■□□□ 1.16
SYNE1-221ENST00000472563 WIZO95785 1651 aa22.26■■□□□ 1.15
SYNE1-221ENST00000472563 LAMC3Q9Y6N6 1575 aa22.18■■□□□ 1.14
SYNE1-221ENST00000472563 CADPSQ9ULU8 1353 aa22.17■■□□□ 1.14
SYNE1-221ENST00000472563 CUX2O14529 1486 aa22.16■■□□□ 1.14
SYNE1-221ENST00000472563 PDS5BQ9NTI5 1447 aa22.14■■□□□ 1.13
SYNE1-221ENST00000472563 TOP2AP11388 1531 aaKnown RBP22.08■■□□□ 1.13
SYNE1-221ENST00000472563 CFTRP13569 1480 aa21.96■■□□□ 1.11
SYNE1-221ENST00000472563 THOC2Q8NI27 1593 aaKnown RBP21.93■■□□□ 1.1
SYNE1-221ENST00000472563 CCDC88BA6NC98 1476 aa21.88■■□□□ 1.09
SYNE1-221ENST00000472563 FANCD2Q9BXW9 1451 aa21.87■■□□□ 1.09
SYNE1-221ENST00000472563 MRC2Q9UBG0 1479 aa21.87■■□□□ 1.09
SYNE1-221ENST00000472563 KIF21AQ7Z4S6 1674 aa21.87■■□□□ 1.09
SYNE1-221ENST00000472563 CEP164Q9UPV0 1460 aa21.84■■□□□ 1.09
SYNE1-221ENST00000472563 DNAJC5Q9H3Z4 198 aa21.84■■□□□ 1.09
SYNE1-221ENST00000472563 WDR62O43379 1518 aa21.77■■□□□ 1.08
SYNE1-221ENST00000472563 URB2Q14146 1524 aaKnown RBP21.65■■□□□ 1.06
SYNE1-221ENST00000472563 SUPT5HO00267 1087 aaKnown RBP21.59■■□□□ 1.05
SYNE1-221ENST00000472563 PRDM2Q13029 1718 aa21.5■■□□□ 1.03
SYNE1-221ENST00000472563 ABCC8Q09428 1581 aa21.49■■□□□ 1.03
SYNE1-221ENST00000472563 TOPBP1Q92547 1522 aa21.47■■□□□ 1.03
SYNE1-221ENST00000472563 IFT140Q96RY7 1462 aa21.43■■□□□ 1.02
SYNE1-221ENST00000472563 DNMBPQ6XZF7 1577 aa21.4■■□□□ 1.02
SYNE1-221ENST00000472563 ZNF608Q9ULD9 1512 aaPredicted RBP21.33■■□□□ 1
SYNE1-221ENST00000472563 POLA1P09884 1462 aaPredicted RBP21.28■■□□□ 1
SYNE1-221ENST00000472563 OSCARQ8IYS5 282 aa21.28■■□□□ 1
SYNE1-221ENST00000472563 SOGA1O94964 1423 aa21.24■□□□□ 0.99
SYNE1-221ENST00000472563 CUX1P39880 1505 aa21.22■□□□□ 0.99
SYNE1-221ENST00000472563 TARBP1Q13395 1621 aaKnown RBP21.21■□□□□ 0.99
SYNE1-221ENST00000472563 AQRO60306 1485 aaKnown RBP eCLIP21.2■□□□□ 0.98
SYNE1-221ENST00000472563 RAD54L2Q9Y4B4 1467 aa21.2■□□□□ 0.98
SYNE1-221ENST00000472563 FGD5Q6ZNL6 1462 aa21.2■□□□□ 0.98
SYNE1-221ENST00000472563 TDRD9Q8NDG6 1382 aaKnown RBP21.15■□□□□ 0.98
SYNE1-221ENST00000472563 EIF4G3O43432 1585 aaKnown RBP21.14■□□□□ 0.98
SYNE1-221ENST00000472563 WRNQ14191 1432 aaPredicted RBP eCLIP21.04■□□□□ 0.96
SYNE1-221ENST00000472563 WDR97A6NE52 1622 aa21.04■□□□□ 0.96
SYNE1-221ENST00000472563 FBLN2P98095 1184 aa21.02■□□□□ 0.96
SYNE1-221ENST00000472563 GRIN2BQ13224 1484 aa21■□□□□ 0.95
SYNE1-221ENST00000472563 ABCA10Q8WWZ4 1543 aa20.99■□□□□ 0.95
SYNE1-221ENST00000472563 SNAPC4Q5SXM2 1469 aa20.97■□□□□ 0.95
SYNE1-221ENST00000472563 TRIM41Q8WV44 630 aa20.96■□□□□ 0.95
SYNE1-221ENST00000472563 GAPVD1Q14C86 1478 aa20.95■□□□□ 0.94
SYNE1-221ENST00000472563 MAGI1Q96QZ7 1491 aaPredicted RBP20.95■□□□□ 0.94
SYNE1-221ENST00000472563 TOP2BQ02880 1626 aa20.94■□□□□ 0.94
SYNE1-221ENST00000472563 CHMP7Q8WUX9 453 aaPredicted RBP20.94■□□□□ 0.94
SYNE1-221ENST00000472563 SYNJ1O43426 1573 aa20.92■□□□□ 0.94
SYNE1-221ENST00000472563 BIVM-ERCC5R4GMW8 1640 aa20.89■□□□□ 0.94
SYNE1-221ENST00000472563 SYNJ2O15056 1496 aa20.88■□□□□ 0.93
SYNE1-221ENST00000472563 ABCA5Q8WWZ7 1642 aa20.85■□□□□ 0.93
SYNE1-221ENST00000472563 CHD1O14646 1710 aa20.84■□□□□ 0.93
SYNE1-221ENST00000472563 ARHGEF11O15085 1522 aa20.83■□□□□ 0.93
SYNE1-221ENST00000472563 RIMBP3CA6NJZ7 1639 aa20.8■□□□□ 0.92
SYNE1-221ENST00000472563 RIMBP3BA6NNM3 1639 aa20.8■□□□□ 0.92
SYNE1-221ENST00000472563 RIMBP3Q9UFD9 1639 aa20.8■□□□□ 0.92
SYNE1-221ENST00000472563 CLASP1Q7Z460 1538 aa20.74■□□□□ 0.91
SYNE1-221ENST00000472563 PBRM1Q86U86 1689 aa20.74■□□□□ 0.91
SYNE1-221ENST00000472563 FHAD1B1AJZ9 1412 aa20.73■□□□□ 0.91
SYNE1-221ENST00000472563 CYB5RLQ6IPT4 315 aa20.73■□□□□ 0.91
SYNE1-221ENST00000472563 ERICH3Q5RHP9 1530 aa20.72■□□□□ 0.91
SYNE1-221ENST00000472563 GRIN2AQ12879 1464 aa20.7■□□□□ 0.9
SYNE1-221ENST00000472563 ADAMTS12P58397 1594 aa20.68■□□□□ 0.9
SYNE1-221ENST00000472563 ARAP1Q96P48 1450 aa20.67■□□□□ 0.9
SYNE1-221ENST00000472563 NUP160Q12769 1436 aa20.65■□□□□ 0.9
SYNE1-221ENST00000472563 KIF27Q86VH2 1401 aa20.63■□□□□ 0.89
SYNE1-221ENST00000472563 IGF1RP08069 1367 aa20.61■□□□□ 0.89
SYNE1-221ENST00000472563 CEP170Q5SW79 1584 aa20.55■□□□□ 0.88
SYNE1-221ENST00000472563 JPH4Q96JJ6 628 aa20.48■□□□□ 0.87
SYNE1-221ENST00000472563 CARMIL1Q5VZK9 1371 aa20.46■□□□□ 0.87
SYNE1-221ENST00000472563 PRG4Q92954 1404 aaPredicted RBP20.43■□□□□ 0.86
SYNE1-221ENST00000472563 ERCC6L2Q5T890 1561 aa20.42■□□□□ 0.86
SYNE1-221ENST00000472563 SHROOM2Q13796 1616 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms