RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 NISCHQ9Y2I1 1504 aa38.91■■■■□ 3.82
CCDC88B-205ENST00000472524 ABCC9O60706 1549 aa35.06■■■■□ 3.2
CCDC88B-205ENST00000472524 CCDC180Q9P1Z9 1646 aa34.84■■■■□ 3.17
CCDC88B-205ENST00000472524 RB1CC1Q8TDY2 1594 aa33.25■■■□□ 2.91
CCDC88B-205ENST00000472524 DNAJC5BQ9UF47 199 aa33.03■■■□□ 2.88
CCDC88B-205ENST00000472524 NACADO15069 1562 aa33.01■■■□□ 2.88
CCDC88B-205ENST00000472524 DCAF8L2P0C7V8 631 aa32.95■■■□□ 2.87
CCDC88B-205ENST00000472524 PABPN1Q86U42 306 aaKnown RBP eCLIP32.69■■■□□ 2.82
CCDC88B-205ENST00000472524 MYO15BQ96JP2 1530 aa32.52■■■□□ 2.8
CCDC88B-205ENST00000472524 UNC13AQ9UPW8 1703 aa32.4■■■□□ 2.78
CCDC88B-205ENST00000472524 BICRAQ9NZM4 1560 aa32.32■■■□□ 2.77
CCDC88B-205ENST00000472524 ZCCHC6Q5VYS8 1495 aaKnown RBP32.32■■■□□ 2.76
CCDC88B-205ENST00000472524 DCAF1Q9Y4B6 1507 aa32.12■■■□□ 2.73
CCDC88B-205ENST00000472524 SCRIBQ14160 1630 aa31.83■■■□□ 2.69
CCDC88B-205ENST00000472524 SHROOM4Q9ULL8 1493 aa31.83■■■□□ 2.69
CCDC88B-205ENST00000472524 CC2D2AQ9P2K1 1620 aa31.6■■■□□ 2.65
CCDC88B-205ENST00000472524 CECR2Q9BXF3 1484 aa31.58■■■□□ 2.65
CCDC88B-205ENST00000472524 EIF4G1Q04637 1599 aaKnown RBP31.53■■■□□ 2.64
CCDC88B-205ENST00000472524 NCAPD3P42695 1498 aa30.53■■■□□ 2.48
CCDC88B-205ENST00000472524 ATAD2BQ9ULI0 1458 aa30.44■■■□□ 2.46
CCDC88B-205ENST00000472524 SMARCA4P51532 1647 aa30.33■■■□□ 2.45
CCDC88B-205ENST00000472524 DNAJC5Q9H3Z4 198 aa30.32■■■□□ 2.44
CCDC88B-205ENST00000472524 SMARCA2P51531 1590 aa30.28■■■□□ 2.44
CCDC88B-205ENST00000472524 ERCC6Q03468 1493 aa30.25■■■□□ 2.43
CCDC88B-205ENST00000472524 HMGXB3Q12766 1538 aa30.24■■■□□ 2.43
CCDC88B-205ENST00000472524 BAZ1AQ9NRL2 1556 aaPredicted RBP30.2■■■□□ 2.42
CCDC88B-205ENST00000472524 CUX2O14529 1486 aa30.19■■■□□ 2.42
CCDC88B-205ENST00000472524 BAZ1BQ9UIG0 1483 aaKnown RBP30.12■■■□□ 2.41
CCDC88B-205ENST00000472524 NESP48681 1621 aa30.11■■■□□ 2.41
CCDC88B-205ENST00000472524 PEG3Q9GZU2 1588 aa30.03■■■□□ 2.4
CCDC88B-205ENST00000472524 MROH2BQ7Z745 1585 aa30.01■■■□□ 2.39
CCDC88B-205ENST00000472524 LAMC3Q9Y6N6 1575 aa29.78■■■□□ 2.36
CCDC88B-205ENST00000472524 THOC2Q8NI27 1593 aaKnown RBP29.74■■■□□ 2.35
CCDC88B-205ENST00000472524 WIZO95785 1651 aa29.72■■■□□ 2.35
CCDC88B-205ENST00000472524 PDS5BQ9NTI5 1447 aa29.67■■■□□ 2.34
CCDC88B-205ENST00000472524 CADPSQ9ULU8 1353 aa29.61■■■□□ 2.33
CCDC88B-205ENST00000472524 KIF21AQ7Z4S6 1674 aa29.59■■■□□ 2.33
CCDC88B-205ENST00000472524 RSF1Q96T23 1441 aaPredicted RBP29.46■■■□□ 2.31
CCDC88B-205ENST00000472524 MRC2Q9UBG0 1479 aa29.42■■■□□ 2.3
CCDC88B-205ENST00000472524 WDR62O43379 1518 aa29.34■■■□□ 2.29
CCDC88B-205ENST00000472524 TOP2AP11388 1531 aaKnown RBP29.32■■■□□ 2.28
CCDC88B-205ENST00000472524 CEP164Q9UPV0 1460 aa29.29■■■□□ 2.28
CCDC88B-205ENST00000472524 FANCD2Q9BXW9 1451 aa29.28■■■□□ 2.28
CCDC88B-205ENST00000472524 CFTRP13569 1480 aa29.24■■■□□ 2.27
CCDC88B-205ENST00000472524 URB2Q14146 1524 aaKnown RBP29.04■■■□□ 2.24
CCDC88B-205ENST00000472524 TRIM41Q8WV44 630 aa29■■■□□ 2.23
CCDC88B-205ENST00000472524 PRDM2Q13029 1718 aa29■■■□□ 2.23
CCDC88B-205ENST00000472524 CCDC88BA6NC98 1476 aa28.96■■■□□ 2.23
CCDC88B-205ENST00000472524 OSCARQ8IYS5 282 aa28.84■■■□□ 2.21
CCDC88B-205ENST00000472524 ZNF608Q9ULD9 1512 aaPredicted RBP28.72■■■□□ 2.19
CCDC88B-205ENST00000472524 IFT140Q96RY7 1462 aa28.71■■■□□ 2.19
CCDC88B-205ENST00000472524 TOPBP1Q92547 1522 aa28.7■■■□□ 2.19
CCDC88B-205ENST00000472524 ABCC8Q09428 1581 aa28.58■■■□□ 2.17
CCDC88B-205ENST00000472524 DNMBPQ6XZF7 1577 aa28.54■■■□□ 2.16
CCDC88B-205ENST00000472524 EIF4G3O43432 1585 aaKnown RBP28.48■■■□□ 2.15
CCDC88B-205ENST00000472524 AQRO60306 1485 aaKnown RBP eCLIP28.45■■■□□ 2.14
CCDC88B-205ENST00000472524 SUPT5HO00267 1087 aaKnown RBP28.44■■■□□ 2.14
CCDC88B-205ENST00000472524 RIMBP3CA6NJZ7 1639 aa28.42■■■□□ 2.14
CCDC88B-205ENST00000472524 RIMBP3BA6NNM3 1639 aa28.42■■■□□ 2.14
CCDC88B-205ENST00000472524 RIMBP3Q9UFD9 1639 aa28.42■■■□□ 2.14
CCDC88B-205ENST00000472524 TARBP1Q13395 1621 aaKnown RBP28.41■■■□□ 2.14
CCDC88B-205ENST00000472524 POLA1P09884 1462 aaPredicted RBP28.4■■■□□ 2.14
CCDC88B-205ENST00000472524 ARHGEF11O15085 1522 aa28.37■■■□□ 2.13
CCDC88B-205ENST00000472524 RAD54L2Q9Y4B4 1467 aa28.34■■■□□ 2.13
CCDC88B-205ENST00000472524 SOGA1O94964 1423 aa28.29■■■□□ 2.12
CCDC88B-205ENST00000472524 FBLN2P98095 1184 aa28.29■■■□□ 2.12
CCDC88B-205ENST00000472524 TDRD9Q8NDG6 1382 aaKnown RBP28.28■■■□□ 2.12
CCDC88B-205ENST00000472524 FGD5Q6ZNL6 1462 aa28.22■■■□□ 2.11
CCDC88B-205ENST00000472524 CHD1O14646 1710 aa28.22■■■□□ 2.11
CCDC88B-205ENST00000472524 CYB5RLQ6IPT4 315 aa28.21■■■□□ 2.11
CCDC88B-205ENST00000472524 CUX1P39880 1505 aa28.19■■■□□ 2.1
CCDC88B-205ENST00000472524 SNAPC4Q5SXM2 1469 aa28.14■■■□□ 2.09
CCDC88B-205ENST00000472524 ARAP1Q96P48 1450 aa28.1■■■□□ 2.09
CCDC88B-205ENST00000472524 WDR97A6NE52 1622 aa28.06■■■□□ 2.08
CCDC88B-205ENST00000472524 CHMP7Q8WUX9 453 aaPredicted RBP28.04■■■□□ 2.08
CCDC88B-205ENST00000472524 GRIN2BQ13224 1484 aa28.03■■■□□ 2.08
CCDC88B-205ENST00000472524 MAGI1Q96QZ7 1491 aaPredicted RBP28.02■■■□□ 2.08
CCDC88B-205ENST00000472524 CLASP1Q7Z460 1538 aa27.98■■■□□ 2.07
CCDC88B-205ENST00000472524 SYNJ2O15056 1496 aa27.95■■■□□ 2.06
CCDC88B-205ENST00000472524 GAPVD1Q14C86 1478 aa27.93■■■□□ 2.06
CCDC88B-205ENST00000472524 SYNJ1O43426 1573 aa27.92■■■□□ 2.06
CCDC88B-205ENST00000472524 TRHP20396 242 aaPredicted RBP27.9■■■□□ 2.06
CCDC88B-205ENST00000472524 PBRM1Q86U86 1689 aa27.89■■■□□ 2.06
CCDC88B-205ENST00000472524 ABCA10Q8WWZ4 1543 aa27.88■■■□□ 2.05
CCDC88B-205ENST00000472524 BIVM-ERCC5R4GMW8 1640 aa27.85■■■□□ 2.05
CCDC88B-205ENST00000472524 TOP2BQ02880 1626 aa27.82■■■□□ 2.04
CCDC88B-205ENST00000472524 ABCA5Q8WWZ7 1642 aa27.81■■■□□ 2.04
CCDC88B-205ENST00000472524 WRNQ14191 1432 aaPredicted RBP eCLIP27.81■■■□□ 2.04
CCDC88B-205ENST00000472524 GRIN2AQ12879 1464 aa27.68■■■□□ 2.02
CCDC88B-205ENST00000472524 ADAMTS12P58397 1594 aa27.62■■■□□ 2.01
CCDC88B-205ENST00000472524 NUP160Q12769 1436 aa27.59■■■□□ 2.01
CCDC88B-205ENST00000472524 ERCC6L2Q5T890 1561 aa27.58■■■□□ 2.01
CCDC88B-205ENST00000472524 FHAD1B1AJZ9 1412 aa27.58■■■□□ 2
CCDC88B-205ENST00000472524 CEP170Q5SW79 1584 aa27.57■■■□□ 2
CCDC88B-205ENST00000472524 ERICH3Q5RHP9 1530 aa27.5■■□□□ 1.99
CCDC88B-205ENST00000472524 SHROOM2Q13796 1616 aa27.41■■□□□ 1.98
CCDC88B-205ENST00000472524 PRG4Q92954 1404 aaPredicted RBP27.35■■□□□ 1.97
CCDC88B-205ENST00000472524 JPH4Q96JJ6 628 aa27.33■■□□□ 1.97
CCDC88B-205ENST00000472524 KIF27Q86VH2 1401 aa27.25■■□□□ 1.95
CCDC88B-205ENST00000472524 RUSC2Q8N2Y8 1516 aa27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms