RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 NISCHQ9Y2I1 1504 aa47.3■■■■■ 5.16
SHH-205ENST00000472308 ABCC9O60706 1549 aa43.31■■■■■ 4.52
SHH-205ENST00000472308 CCDC180Q9P1Z9 1646 aa42.69■■■■■ 4.42
SHH-205ENST00000472308 DNAJC5BQ9UF47 199 aa41.22■■■■■ 4.19
SHH-205ENST00000472308 RB1CC1Q8TDY2 1594 aa40.91■■■■■ 4.14
SHH-205ENST00000472308 NACADO15069 1562 aa40.49■■■■■ 4.07
SHH-205ENST00000472308 PABPN1Q86U42 306 aaKnown RBP eCLIP40.2■■■■■ 4.03
SHH-205ENST00000472308 DCAF8L2P0C7V8 631 aa40.05■■■■■ 4
SHH-205ENST00000472308 UNC13AQ9UPW8 1703 aa40.02■■■■■ 4
SHH-205ENST00000472308 BICRAQ9NZM4 1560 aa39.84■■■■□ 3.97
SHH-205ENST00000472308 MYO15BQ96JP2 1530 aa39.76■■■■□ 3.96
SHH-205ENST00000472308 SHROOM4Q9ULL8 1493 aa39.17■■■■□ 3.86
SHH-205ENST00000472308 ZCCHC6Q5VYS8 1495 aaKnown RBP39.1■■■■□ 3.85
SHH-205ENST00000472308 CC2D2AQ9P2K1 1620 aa39.09■■■■□ 3.85
SHH-205ENST00000472308 CECR2Q9BXF3 1484 aa39.07■■■■□ 3.85
SHH-205ENST00000472308 DCAF1Q9Y4B6 1507 aa39.03■■■■□ 3.84
SHH-205ENST00000472308 SCRIBQ14160 1630 aa38.88■■■■□ 3.81
SHH-205ENST00000472308 EIF4G1Q04637 1599 aaKnown RBP38.87■■■■□ 3.81
SHH-205ENST00000472308 DNAJC5Q9H3Z4 198 aa38.24■■■■□ 3.71
SHH-205ENST00000472308 CUX2O14529 1486 aa37.56■■■■□ 3.6
SHH-205ENST00000472308 NCAPD3P42695 1498 aa37.42■■■■□ 3.58
SHH-205ENST00000472308 ERCC6Q03468 1493 aa37.38■■■■□ 3.57
SHH-205ENST00000472308 ATAD2BQ9ULI0 1458 aa37.23■■■■□ 3.55
SHH-205ENST00000472308 HMGXB3Q12766 1538 aa37.09■■■■□ 3.53
SHH-205ENST00000472308 NESP48681 1621 aa37.06■■■■□ 3.52
SHH-205ENST00000472308 SMARCA2P51531 1590 aa37.04■■■■□ 3.52
SHH-205ENST00000472308 SMARCA4P51532 1647 aa37.03■■■■□ 3.52
SHH-205ENST00000472308 THOC2Q8NI27 1593 aaKnown RBP36.82■■■■□ 3.48
SHH-205ENST00000472308 BAZ1BQ9UIG0 1483 aaKnown RBP36.8■■■■□ 3.48
SHH-205ENST00000472308 BAZ1AQ9NRL2 1556 aaPredicted RBP36.73■■■■□ 3.47
SHH-205ENST00000472308 PEG3Q9GZU2 1588 aa36.7■■■■□ 3.46
SHH-205ENST00000472308 LAMC3Q9Y6N6 1575 aa36.65■■■■□ 3.46
SHH-205ENST00000472308 KIF21AQ7Z4S6 1674 aa36.52■■■■□ 3.44
SHH-205ENST00000472308 MROH2BQ7Z745 1585 aa36.46■■■■□ 3.43
SHH-205ENST00000472308 PDS5BQ9NTI5 1447 aa36.43■■■■□ 3.42
SHH-205ENST00000472308 TRIM41Q8WV44 630 aa36.26■■■■□ 3.4
SHH-205ENST00000472308 CADPSQ9ULU8 1353 aa36.23■■■■□ 3.39
SHH-205ENST00000472308 MRC2Q9UBG0 1479 aa36.2■■■■□ 3.39
SHH-205ENST00000472308 WDR62O43379 1518 aa36.16■■■■□ 3.38
SHH-205ENST00000472308 WIZO95785 1651 aa35.97■■■■□ 3.35
SHH-205ENST00000472308 CEP164Q9UPV0 1460 aa35.92■■■■□ 3.34
SHH-205ENST00000472308 FANCD2Q9BXW9 1451 aa35.83■■■■□ 3.33
SHH-205ENST00000472308 CFTRP13569 1480 aa35.72■■■■□ 3.31
SHH-205ENST00000472308 OSCARQ8IYS5 282 aa35.68■■■■□ 3.3
SHH-205ENST00000472308 URB2Q14146 1524 aaKnown RBP35.62■■■■□ 3.29
SHH-205ENST00000472308 TOP2AP11388 1531 aaKnown RBP35.47■■■■□ 3.27
SHH-205ENST00000472308 RSF1Q96T23 1441 aaPredicted RBP35.47■■■■□ 3.27
SHH-205ENST00000472308 RIMBP3CA6NJZ7 1639 aa35.36■■■■□ 3.25
SHH-205ENST00000472308 RIMBP3BA6NNM3 1639 aa35.36■■■■□ 3.25
SHH-205ENST00000472308 RIMBP3Q9UFD9 1639 aa35.36■■■■□ 3.25
SHH-205ENST00000472308 ZNF608Q9ULD9 1512 aaPredicted RBP35.28■■■■□ 3.24
SHH-205ENST00000472308 PRDM2Q13029 1718 aa35.25■■■■□ 3.23
SHH-205ENST00000472308 IFT140Q96RY7 1462 aa35.22■■■■□ 3.23
SHH-205ENST00000472308 ARHGEF11O15085 1522 aa35.2■■■■□ 3.23
SHH-205ENST00000472308 TOPBP1Q92547 1522 aa35.1■■■■□ 3.21
SHH-205ENST00000472308 CCDC88BA6NC98 1476 aa35.08■■■■□ 3.21
SHH-205ENST00000472308 EIF4G3O43432 1585 aaKnown RBP35.04■■■■□ 3.2
SHH-205ENST00000472308 CYB5RLQ6IPT4 315 aa34.9■■■■□ 3.18
SHH-205ENST00000472308 ABCC8Q09428 1581 aa34.9■■■■□ 3.18
SHH-205ENST00000472308 DNMBPQ6XZF7 1577 aa34.9■■■■□ 3.18
SHH-205ENST00000472308 CHD1O14646 1710 aa34.86■■■■□ 3.17
SHH-205ENST00000472308 TARBP1Q13395 1621 aaKnown RBP34.85■■■■□ 3.17
SHH-205ENST00000472308 AQRO60306 1485 aaKnown RBP eCLIP34.84■■■■□ 3.17
SHH-205ENST00000472308 ARAP1Q96P48 1450 aa34.84■■■■□ 3.17
SHH-205ENST00000472308 POLA1P09884 1462 aaPredicted RBP34.71■■■■□ 3.15
SHH-205ENST00000472308 TRHP20396 242 aaPredicted RBP34.67■■■■□ 3.14
SHH-205ENST00000472308 FBLN2P98095 1184 aa34.65■■■■□ 3.14
SHH-205ENST00000472308 RAD54L2Q9Y4B4 1467 aa34.59■■■■□ 3.13
SHH-205ENST00000472308 TDRD9Q8NDG6 1382 aaKnown RBP34.52■■■■□ 3.12
SHH-205ENST00000472308 CLASP1Q7Z460 1538 aa34.5■■■■□ 3.11
SHH-205ENST00000472308 SOGA1O94964 1423 aa34.48■■■■□ 3.11
SHH-205ENST00000472308 SNAPC4Q5SXM2 1469 aa34.48■■■■□ 3.11
SHH-205ENST00000472308 WDR97A6NE52 1622 aa34.41■■■■□ 3.1
SHH-205ENST00000472308 FGD5Q6ZNL6 1462 aa34.39■■■■□ 3.1
SHH-205ENST00000472308 SYNJ1O43426 1573 aa34.35■■■■□ 3.09
SHH-205ENST00000472308 MAGI1Q96QZ7 1491 aaPredicted RBP34.34■■■■□ 3.09
SHH-205ENST00000472308 CHMP7Q8WUX9 453 aaPredicted RBP34.3■■■■□ 3.08
SHH-205ENST00000472308 CUX1P39880 1505 aa34.3■■■■□ 3.08
SHH-205ENST00000472308 GRIN2BQ13224 1484 aa34.27■■■■□ 3.08
SHH-205ENST00000472308 SYNJ2O15056 1496 aa34.25■■■■□ 3.07
SHH-205ENST00000472308 GAPVD1Q14C86 1478 aa34.13■■■■□ 3.05
SHH-205ENST00000472308 PBRM1Q86U86 1689 aa34.1■■■■□ 3.05
SHH-205ENST00000472308 AEBP2Q6ZN18 517 aaPredicted RBP34.07■■■■□ 3.04
SHH-205ENST00000472308 ABCA5Q8WWZ7 1642 aa34■■■■□ 3.03
SHH-205ENST00000472308 ABCA10Q8WWZ4 1543 aa33.96■■■■□ 3.03
SHH-205ENST00000472308 ERCC6L2Q5T890 1561 aa33.94■■■■□ 3.02
SHH-205ENST00000472308 GRIN2AQ12879 1464 aa33.86■■■■□ 3.01
SHH-205ENST00000472308 NUP160Q12769 1436 aa33.79■■■■□ 3
SHH-205ENST00000472308 CEP170Q5SW79 1584 aa33.79■■■■□ 3
SHH-205ENST00000472308 ADAMTS12P58397 1594 aa33.78■■■■□ 3
SHH-205ENST00000472308 SHROOM2Q13796 1616 aa33.71■■■□□ 2.99
SHH-205ENST00000472308 WRNQ14191 1432 aaPredicted RBP eCLIP33.67■■■□□ 2.98
SHH-205ENST00000472308 FHAD1B1AJZ9 1412 aa33.62■■■□□ 2.97
SHH-205ENST00000472308 KIF13AQ9H1H9 1805 aa33.57■■■□□ 2.96
SHH-205ENST00000472308 BIVM-ERCC5R4GMW8 1640 aa33.55■■■□□ 2.96
SHH-205ENST00000472308 TOP2BQ02880 1626 aa33.54■■■□□ 2.96
SHH-205ENST00000472308 ERICH3Q5RHP9 1530 aa33.51■■■□□ 2.95
SHH-205ENST00000472308 PRG4Q92954 1404 aaPredicted RBP33.47■■■□□ 2.95
SHH-205ENST00000472308 JPH4Q96JJ6 628 aa33.36■■■□□ 2.93
SHH-205ENST00000472308 RUSC2Q8N2Y8 1516 aa33.33■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 181.7 ms