RNA–Protein interactions for RNA: ENST00000472096.1

CALD1-215, Transcript of caldesmon 1, humanhuman

TSL 2

Gene CALD1, Length 651 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-215ENST00000472096 NISCHQ9Y2I1 1504 aa37■■■■□ 3.51
CALD1-215ENST00000472096 AEBP2Q6ZN18 517 aaPredicted RBP35.7■■■■□ 3.31
CALD1-215ENST00000472096 CHIC1Q5VXU3 224 aa35.17■■■■□ 3.22
CALD1-215ENST00000472096 CCDC180Q9P1Z9 1646 aa33.07■■■□□ 2.88
CALD1-215ENST00000472096 ABCC9O60706 1549 aa32.33■■■□□ 2.77
CALD1-215ENST00000472096 RB1CC1Q8TDY2 1594 aa31.11■■■□□ 2.57
CALD1-215ENST00000472096 PHF23Q9BUL5 403 aaPredicted RBP31.03■■■□□ 2.56
CALD1-215ENST00000472096 NACADO15069 1562 aa31.03■■■□□ 2.56
CALD1-215ENST00000472096 ZCCHC6Q5VYS8 1495 aaKnown RBP30.84■■■□□ 2.53
CALD1-215ENST00000472096 MYO15BQ96JP2 1530 aa30.81■■■□□ 2.52
CALD1-215ENST00000472096 DCAF8L2P0C7V8 631 aa30.78■■■□□ 2.52
CALD1-215ENST00000472096 DCAF1Q9Y4B6 1507 aa30.64■■■□□ 2.5
CALD1-215ENST00000472096 UNC13AQ9UPW8 1703 aa30.54■■■□□ 2.48
CALD1-215ENST00000472096 BICRAQ9NZM4 1560 aa30.2■■■□□ 2.42
CALD1-215ENST00000472096 SENP3Q9H4L4 574 aaPredicted RBP30.14■■■□□ 2.42
CALD1-215ENST00000472096 SCRIBQ14160 1630 aa30.11■■■□□ 2.41
CALD1-215ENST00000472096 PABPN1Q86U42 306 aaKnown RBP eCLIP30.1■■■□□ 2.41
CALD1-215ENST00000472096 SHROOM4Q9ULL8 1493 aa29.86■■■□□ 2.37
CALD1-215ENST00000472096 DNAJC5BQ9UF47 199 aa29.69■■■□□ 2.34
CALD1-215ENST00000472096 EIF4G1Q04637 1599 aaKnown RBP29.39■■■□□ 2.3
CALD1-215ENST00000472096 CC2D2AQ9P2K1 1620 aa29.31■■■□□ 2.28
CALD1-215ENST00000472096 CECR2Q9BXF3 1484 aa29.06■■■□□ 2.24
CALD1-215ENST00000472096 SMARCA4P51532 1647 aa28.8■■■□□ 2.2
CALD1-215ENST00000472096 BAZ1AQ9NRL2 1556 aaPredicted RBP28.71■■■□□ 2.19
CALD1-215ENST00000472096 PLPPR3Q6T4P5 718 aa28.71■■■□□ 2.19
CALD1-215ENST00000472096 ATAD2BQ9ULI0 1458 aa28.59■■■□□ 2.17
CALD1-215ENST00000472096 SMARCA2P51531 1590 aa28.59■■■□□ 2.17
CALD1-215ENST00000472096 NCAPD3P42695 1498 aa28.58■■■□□ 2.17
CALD1-215ENST00000472096 MROH2BQ7Z745 1585 aa28.52■■■□□ 2.16
CALD1-215ENST00000472096 PEG3Q9GZU2 1588 aa28.52■■■□□ 2.16
CALD1-215ENST00000472096 HMGXB3Q12766 1538 aa28.52■■■□□ 2.16
CALD1-215ENST00000472096 BAZ1BQ9UIG0 1483 aaKnown RBP28.37■■■□□ 2.13
CALD1-215ENST00000472096 WIZO95785 1651 aa28.26■■■□□ 2.11
CALD1-215ENST00000472096 RSF1Q96T23 1441 aaPredicted RBP28.1■■■□□ 2.09
CALD1-215ENST00000472096 FOXD1Q16676 465 aa28■■■□□ 2.07
CALD1-215ENST00000472096 NESP48681 1621 aa27.96■■■□□ 2.07
CALD1-215ENST00000472096 TOP2AP11388 1531 aaKnown RBP27.93■■■□□ 2.06
CALD1-215ENST00000472096 LAMC3Q9Y6N6 1575 aa27.92■■■□□ 2.06
CALD1-215ENST00000472096 ERCC6Q03468 1493 aa27.87■■■□□ 2.05
CALD1-215ENST00000472096 KIF21AQ7Z4S6 1674 aa27.75■■■□□ 2.03
CALD1-215ENST00000472096 CADPSQ9ULU8 1353 aa27.72■■■□□ 2.03
CALD1-215ENST00000472096 THOC2Q8NI27 1593 aaKnown RBP27.67■■■□□ 2.02
CALD1-215ENST00000472096 CUX2O14529 1486 aa27.65■■■□□ 2.02
CALD1-215ENST00000472096 PDS5BQ9NTI5 1447 aa27.65■■■□□ 2.02
CALD1-215ENST00000472096 CFTRP13569 1480 aa27.57■■■□□ 2
CALD1-215ENST00000472096 PRDM2Q13029 1718 aa27.56■■■□□ 2
CALD1-215ENST00000472096 CCDC88BA6NC98 1476 aa27.54■■■□□ 2
CALD1-215ENST00000472096 FANCD2Q9BXW9 1451 aa27.44■■□□□ 1.98
CALD1-215ENST00000472096 CEP164Q9UPV0 1460 aa27.44■■□□□ 1.98
CALD1-215ENST00000472096 MRC2Q9UBG0 1479 aa27.43■■□□□ 1.98
CALD1-215ENST00000472096 WDR62O43379 1518 aa27.38■■□□□ 1.97
CALD1-215ENST00000472096 ADRA2BP18089 450 aa27.29■■□□□ 1.96
CALD1-215ENST00000472096 PPP6R1Q9UPN7 881 aa27.29■■□□□ 1.96
CALD1-215ENST00000472096 URB2Q14146 1524 aaKnown RBP27.21■■□□□ 1.95
CALD1-215ENST00000472096 SUPT5HO00267 1087 aaKnown RBP27.2■■□□□ 1.94
CALD1-215ENST00000472096 TOPBP1Q92547 1522 aa27.01■■□□□ 1.91
CALD1-215ENST00000472096 DNMBPQ6XZF7 1577 aa27.01■■□□□ 1.91
CALD1-215ENST00000472096 ABCC8Q09428 1581 aa26.97■■□□□ 1.91
CALD1-215ENST00000472096 IFT140Q96RY7 1462 aa26.85■■□□□ 1.89
CALD1-215ENST00000472096 DNAJC5Q9H3Z4 198 aa26.82■■□□□ 1.88
CALD1-215ENST00000472096 CUX1P39880 1505 aa26.78■■□□□ 1.88
CALD1-215ENST00000472096 TARBP1Q13395 1621 aaKnown RBP26.77■■□□□ 1.88
CALD1-215ENST00000472096 POLA1P09884 1462 aaPredicted RBP26.77■■□□□ 1.88
CALD1-215ENST00000472096 ZNF608Q9ULD9 1512 aaPredicted RBP26.75■■□□□ 1.87
CALD1-215ENST00000472096 EIF4G3O43432 1585 aaKnown RBP26.72■■□□□ 1.87
CALD1-215ENST00000472096 FGD5Q6ZNL6 1462 aa26.69■■□□□ 1.86
CALD1-215ENST00000472096 RAD54L2Q9Y4B4 1467 aa26.62■■□□□ 1.85
CALD1-215ENST00000472096 WDR97A6NE52 1622 aa26.61■■□□□ 1.85
CALD1-215ENST00000472096 BIVM-ERCC5R4GMW8 1640 aa26.58■■□□□ 1.85
CALD1-215ENST00000472096 SOGA1O94964 1423 aa26.58■■□□□ 1.85
CALD1-215ENST00000472096 TOP2BQ02880 1626 aa26.54■■□□□ 1.84
CALD1-215ENST00000472096 AQRO60306 1485 aaKnown RBP eCLIP26.54■■□□□ 1.84
CALD1-215ENST00000472096 SYNJ1O43426 1573 aa26.54■■□□□ 1.84
CALD1-215ENST00000472096 WRNQ14191 1432 aaPredicted RBP eCLIP26.51■■□□□ 1.83
CALD1-215ENST00000472096 PIAS4Q8N2W9 510 aaPredicted RBP26.48■■□□□ 1.83
CALD1-215ENST00000472096 CHD1O14646 1710 aa26.45■■□□□ 1.82
CALD1-215ENST00000472096 TDRD9Q8NDG6 1382 aaKnown RBP26.45■■□□□ 1.82
CALD1-215ENST00000472096 ABCA10Q8WWZ4 1543 aa26.43■■□□□ 1.82
CALD1-215ENST00000472096 PBRM1Q86U86 1689 aa26.42■■□□□ 1.82
CALD1-215ENST00000472096 ABCA5Q8WWZ7 1642 aa26.41■■□□□ 1.82
CALD1-215ENST00000472096 OSCARQ8IYS5 282 aa26.35■■□□□ 1.81
CALD1-215ENST00000472096 SNAPC4Q5SXM2 1469 aa26.35■■□□□ 1.81
CALD1-215ENST00000472096 GRIN2BQ13224 1484 aa26.34■■□□□ 1.81
CALD1-215ENST00000472096 GAPVD1Q14C86 1478 aa26.32■■□□□ 1.8
CALD1-215ENST00000472096 MAGI1Q96QZ7 1491 aaPredicted RBP26.31■■□□□ 1.8
CALD1-215ENST00000472096 SYNJ2O15056 1496 aa26.19■■□□□ 1.78
CALD1-215ENST00000472096 ADAMTS12P58397 1594 aa26.16■■□□□ 1.78
CALD1-215ENST00000472096 FBLN2P98095 1184 aa26.16■■□□□ 1.78
CALD1-215ENST00000472096 RIMBP3CA6NJZ7 1639 aa26.13■■□□□ 1.77
CALD1-215ENST00000472096 RIMBP3BA6NNM3 1639 aa26.13■■□□□ 1.77
CALD1-215ENST00000472096 RIMBP3Q9UFD9 1639 aa26.13■■□□□ 1.77
CALD1-215ENST00000472096 ERICH3Q5RHP9 1530 aa26.13■■□□□ 1.77
CALD1-215ENST00000472096 CLASP1Q7Z460 1538 aa26.1■■□□□ 1.77
CALD1-215ENST00000472096 CHMP7Q8WUX9 453 aaPredicted RBP26.08■■□□□ 1.77
CALD1-215ENST00000472096 ARHGEF11O15085 1522 aa26.07■■□□□ 1.76
CALD1-215ENST00000472096 GRIN2AQ12879 1464 aa26.03■■□□□ 1.76
CALD1-215ENST00000472096 FHAD1B1AJZ9 1412 aa26■■□□□ 1.75
CALD1-215ENST00000472096 KIF27Q86VH2 1401 aa25.95■■□□□ 1.74
CALD1-215ENST00000472096 CEP170Q5SW79 1584 aa25.94■■□□□ 1.74
CALD1-215ENST00000472096 CUL7Q14999 1698 aa25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms