RNA–Protein interactions for RNA: ENST00000471842.1

LTA-215, Transcript of lymphotoxin alpha, humanhuman

TSL 2

Gene LTA, Length 1,497 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTA-215ENST00000471842 NISCHQ9Y2I1 1504 aa32.4■■■□□ 2.78
LTA-215ENST00000471842 CCDC180Q9P1Z9 1646 aa28.95■■■□□ 2.23
LTA-215ENST00000471842 ABCC9O60706 1549 aa28.81■■■□□ 2.2
LTA-215ENST00000471842 RB1CC1Q8TDY2 1594 aa27.47■■□□□ 1.99
LTA-215ENST00000471842 DCAF8L2P0C7V8 631 aa27.42■■□□□ 1.98
LTA-215ENST00000471842 NACADO15069 1562 aa27.3■■□□□ 1.96
LTA-215ENST00000471842 ZCCHC6Q5VYS8 1495 aaKnown RBP26.91■■□□□ 1.9
LTA-215ENST00000471842 MYO15BQ96JP2 1530 aa26.91■■□□□ 1.9
LTA-215ENST00000471842 PABPN1Q86U42 306 aaKnown RBP eCLIP26.87■■□□□ 1.89
LTA-215ENST00000471842 UNC13AQ9UPW8 1703 aa26.82■■□□□ 1.88
LTA-215ENST00000471842 DCAF1Q9Y4B6 1507 aa26.7■■□□□ 1.86
LTA-215ENST00000471842 DNAJC5BQ9UF47 199 aa26.68■■□□□ 1.86
LTA-215ENST00000471842 BICRAQ9NZM4 1560 aa26.61■■□□□ 1.85
LTA-215ENST00000471842 SCRIBQ14160 1630 aa26.53■■□□□ 1.84
LTA-215ENST00000471842 SHROOM4Q9ULL8 1493 aa26.24■■□□□ 1.79
LTA-215ENST00000471842 CC2D2AQ9P2K1 1620 aa25.99■■□□□ 1.75
LTA-215ENST00000471842 EIF4G1Q04637 1599 aaKnown RBP25.98■■□□□ 1.75
LTA-215ENST00000471842 CECR2Q9BXF3 1484 aa25.89■■□□□ 1.74
LTA-215ENST00000471842 SMARCA4P51532 1647 aa25.25■■□□□ 1.63
LTA-215ENST00000471842 ATAD2BQ9ULI0 1458 aa25.18■■□□□ 1.62
LTA-215ENST00000471842 NCAPD3P42695 1498 aa25.17■■□□□ 1.62
LTA-215ENST00000471842 BAZ1AQ9NRL2 1556 aaPredicted RBP25.16■■□□□ 1.62
LTA-215ENST00000471842 SMARCA2P51531 1590 aa25.14■■□□□ 1.62
LTA-215ENST00000471842 HMGXB3Q12766 1538 aa25.05■■□□□ 1.6
LTA-215ENST00000471842 BAZ1BQ9UIG0 1483 aaKnown RBP25.02■■□□□ 1.6
LTA-215ENST00000471842 MROH2BQ7Z745 1585 aa25■■□□□ 1.59
LTA-215ENST00000471842 PEG3Q9GZU2 1588 aa24.91■■□□□ 1.58
LTA-215ENST00000471842 ERCC6Q03468 1493 aa24.89■■□□□ 1.57
LTA-215ENST00000471842 NESP48681 1621 aa24.8■■□□□ 1.56
LTA-215ENST00000471842 WIZO95785 1651 aa24.74■■□□□ 1.55
LTA-215ENST00000471842 CUX2O14529 1486 aa24.64■■□□□ 1.53
LTA-215ENST00000471842 LAMC3Q9Y6N6 1575 aa24.61■■□□□ 1.53
LTA-215ENST00000471842 RSF1Q96T23 1441 aaPredicted RBP24.55■■□□□ 1.52
LTA-215ENST00000471842 KIF21AQ7Z4S6 1674 aa24.49■■□□□ 1.51
LTA-215ENST00000471842 PDS5BQ9NTI5 1447 aa24.48■■□□□ 1.51
LTA-215ENST00000471842 THOC2Q8NI27 1593 aaKnown RBP24.46■■□□□ 1.51
LTA-215ENST00000471842 CADPSQ9ULU8 1353 aa24.46■■□□□ 1.51
LTA-215ENST00000471842 TOP2AP11388 1531 aaKnown RBP24.43■■□□□ 1.5
LTA-215ENST00000471842 DNAJC5Q9H3Z4 198 aa24.29■■□□□ 1.48
LTA-215ENST00000471842 MRC2Q9UBG0 1479 aa24.28■■□□□ 1.48
LTA-215ENST00000471842 CEP164Q9UPV0 1460 aa24.25■■□□□ 1.47
LTA-215ENST00000471842 FANCD2Q9BXW9 1451 aa24.23■■□□□ 1.47
LTA-215ENST00000471842 CFTRP13569 1480 aa24.22■■□□□ 1.47
LTA-215ENST00000471842 WDR62O43379 1518 aa24.17■■□□□ 1.46
LTA-215ENST00000471842 CCDC88BA6NC98 1476 aa24.13■■□□□ 1.45
LTA-215ENST00000471842 PRDM2Q13029 1718 aa24.03■■□□□ 1.44
LTA-215ENST00000471842 URB2Q14146 1524 aaKnown RBP24■■□□□ 1.43
LTA-215ENST00000471842 SUPT5HO00267 1087 aaKnown RBP23.82■■□□□ 1.4
LTA-215ENST00000471842 TOPBP1Q92547 1522 aa23.79■■□□□ 1.4
LTA-215ENST00000471842 DNMBPQ6XZF7 1577 aa23.73■■□□□ 1.39
LTA-215ENST00000471842 IFT140Q96RY7 1462 aa23.72■■□□□ 1.39
LTA-215ENST00000471842 ABCC8Q09428 1581 aa23.71■■□□□ 1.39
LTA-215ENST00000471842 ZNF608Q9ULD9 1512 aaPredicted RBP23.68■■□□□ 1.38
LTA-215ENST00000471842 EIF4G3O43432 1585 aaKnown RBP23.59■■□□□ 1.37
LTA-215ENST00000471842 OSCARQ8IYS5 282 aa23.57■■□□□ 1.36
LTA-215ENST00000471842 POLA1P09884 1462 aaPredicted RBP23.57■■□□□ 1.36
LTA-215ENST00000471842 TRIM41Q8WV44 630 aa23.53■■□□□ 1.36
LTA-215ENST00000471842 TARBP1Q13395 1621 aaKnown RBP23.53■■□□□ 1.36
LTA-215ENST00000471842 AQRO60306 1485 aaKnown RBP eCLIP23.51■■□□□ 1.35
LTA-215ENST00000471842 RAD54L2Q9Y4B4 1467 aa23.51■■□□□ 1.35
LTA-215ENST00000471842 FGD5Q6ZNL6 1462 aa23.48■■□□□ 1.35
LTA-215ENST00000471842 CUX1P39880 1505 aa23.48■■□□□ 1.35
LTA-215ENST00000471842 SOGA1O94964 1423 aa23.47■■□□□ 1.35
LTA-215ENST00000471842 TDRD9Q8NDG6 1382 aaKnown RBP23.41■■□□□ 1.34
LTA-215ENST00000471842 FBLN2P98095 1184 aa23.4■■□□□ 1.34
LTA-215ENST00000471842 CHD1O14646 1710 aa23.36■■□□□ 1.33
LTA-215ENST00000471842 SNAPC4Q5SXM2 1469 aa23.3■■□□□ 1.32
LTA-215ENST00000471842 WDR97A6NE52 1622 aa23.28■■□□□ 1.32
LTA-215ENST00000471842 RIMBP3CA6NJZ7 1639 aa23.27■■□□□ 1.32
LTA-215ENST00000471842 RIMBP3BA6NNM3 1639 aa23.27■■□□□ 1.32
LTA-215ENST00000471842 RIMBP3Q9UFD9 1639 aa23.27■■□□□ 1.32
LTA-215ENST00000471842 GRIN2BQ13224 1484 aa23.23■■□□□ 1.31
LTA-215ENST00000471842 ARHGEF11O15085 1522 aa23.22■■□□□ 1.31
LTA-215ENST00000471842 WRNQ14191 1432 aaPredicted RBP eCLIP23.2■■□□□ 1.3
LTA-215ENST00000471842 PBRM1Q86U86 1689 aa23.19■■□□□ 1.3
LTA-215ENST00000471842 GAPVD1Q14C86 1478 aa23.19■■□□□ 1.3
LTA-215ENST00000471842 CHMP7Q8WUX9 453 aaPredicted RBP23.19■■□□□ 1.3
LTA-215ENST00000471842 MAGI1Q96QZ7 1491 aaPredicted RBP23.19■■□□□ 1.3
LTA-215ENST00000471842 SYNJ1O43426 1573 aa23.18■■□□□ 1.3
LTA-215ENST00000471842 ABCA10Q8WWZ4 1543 aa23.17■■□□□ 1.3
LTA-215ENST00000471842 TOP2BQ02880 1626 aa23.16■■□□□ 1.3
LTA-215ENST00000471842 BIVM-ERCC5R4GMW8 1640 aa23.16■■□□□ 1.3
LTA-215ENST00000471842 ABCA5Q8WWZ7 1642 aa23.14■■□□□ 1.3
LTA-215ENST00000471842 SYNJ2O15056 1496 aa23.12■■□□□ 1.29
LTA-215ENST00000471842 CYB5RLQ6IPT4 315 aa23.06■■□□□ 1.28
LTA-215ENST00000471842 CLASP1Q7Z460 1538 aa23.04■■□□□ 1.28
LTA-215ENST00000471842 ARAP1Q96P48 1450 aa23■■□□□ 1.27
LTA-215ENST00000471842 ADAMTS12P58397 1594 aa22.97■■□□□ 1.27
LTA-215ENST00000471842 GRIN2AQ12879 1464 aa22.94■■□□□ 1.26
LTA-215ENST00000471842 ERICH3Q5RHP9 1530 aa22.89■■□□□ 1.25
LTA-215ENST00000471842 FHAD1B1AJZ9 1412 aa22.89■■□□□ 1.25
LTA-215ENST00000471842 CEP170Q5SW79 1584 aa22.85■■□□□ 1.25
LTA-215ENST00000471842 NUP160Q12769 1436 aa22.8■■□□□ 1.24
LTA-215ENST00000471842 TRHP20396 242 aaPredicted RBP22.79■■□□□ 1.24
LTA-215ENST00000471842 ERCC6L2Q5T890 1561 aa22.75■■□□□ 1.23
LTA-215ENST00000471842 KIF27Q86VH2 1401 aa22.74■■□□□ 1.23
LTA-215ENST00000471842 SHROOM2Q13796 1616 aa22.67■■□□□ 1.22
LTA-215ENST00000471842 RUSC2Q8N2Y8 1516 aa22.65■■□□□ 1.22
LTA-215ENST00000471842 CUL7Q14999 1698 aa22.65■■□□□ 1.22
LTA-215ENST00000471842 IGF1RP08069 1367 aa22.64■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms