RNA–Protein interactions for RNA: ENST00000471658.5

PSPC1-203, Transcript of paraspeckle component 1, humanhuman

TSL 1 (best)

Gene PSPC1, Length 1,647 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-203ENST00000471658 NISCHQ9Y2I1 1504 aa45.07■■■■■ 4.8
PSPC1-203ENST00000471658 CCDC180Q9P1Z9 1646 aa39.57■■■■□ 3.93
PSPC1-203ENST00000471658 ABCC9O60706 1549 aa38.18■■■■□ 3.7
PSPC1-203ENST00000471658 ZCCHC6Q5VYS8 1495 aaKnown RBP37.7■■■■□ 3.63
PSPC1-203ENST00000471658 DCAF8L2P0C7V8 631 aa37.54■■■■□ 3.6
PSPC1-203ENST00000471658 DCAF1Q9Y4B6 1507 aa37.21■■■■□ 3.55
PSPC1-203ENST00000471658 NACADO15069 1562 aa37.06■■■■□ 3.52
PSPC1-203ENST00000471658 MYO15BQ96JP2 1530 aa37.04■■■■□ 3.52
PSPC1-203ENST00000471658 RB1CC1Q8TDY2 1594 aa36.92■■■■□ 3.5
PSPC1-203ENST00000471658 SCRIBQ14160 1630 aa36.36■■■■□ 3.41
PSPC1-203ENST00000471658 SHROOM4Q9ULL8 1493 aa36.31■■■■□ 3.4
PSPC1-203ENST00000471658 UNC13AQ9UPW8 1703 aa36.14■■■■□ 3.38
PSPC1-203ENST00000471658 PABPN1Q86U42 306 aaKnown RBP eCLIP35.91■■■■□ 3.34
PSPC1-203ENST00000471658 BICRAQ9NZM4 1560 aa35.86■■■■□ 3.33
PSPC1-203ENST00000471658 CECR2Q9BXF3 1484 aa35.13■■■■□ 3.21
PSPC1-203ENST00000471658 EIF4G1Q04637 1599 aaKnown RBP34.82■■■■□ 3.16
PSPC1-203ENST00000471658 MROH2BQ7Z745 1585 aa34.82■■■■□ 3.16
PSPC1-203ENST00000471658 BAZ1AQ9NRL2 1556 aaPredicted RBP34.82■■■■□ 3.16
PSPC1-203ENST00000471658 SMARCA4P51532 1647 aa34.78■■■■□ 3.16
PSPC1-203ENST00000471658 RSF1Q96T23 1441 aaPredicted RBP34.7■■■■□ 3.15
PSPC1-203ENST00000471658 SUPT5HO00267 1087 aaKnown RBP34.58■■■■□ 3.13
PSPC1-203ENST00000471658 CC2D2AQ9P2K1 1620 aa34.5■■■■□ 3.11
PSPC1-203ENST00000471658 WIZO95785 1651 aa34.48■■■■□ 3.11
PSPC1-203ENST00000471658 DNAJC5BQ9UF47 199 aa34.43■■■■□ 3.1
PSPC1-203ENST00000471658 ATAD2BQ9ULI0 1458 aa34.43■■■■□ 3.1
PSPC1-203ENST00000471658 PEG3Q9GZU2 1588 aa34.36■■■■□ 3.09
PSPC1-203ENST00000471658 SMARCA2P51531 1590 aa34.33■■■■□ 3.09
PSPC1-203ENST00000471658 NCAPD3P42695 1498 aa34.24■■■■□ 3.07
PSPC1-203ENST00000471658 BAZ1BQ9UIG0 1483 aaKnown RBP34.16■■■■□ 3.06
PSPC1-203ENST00000471658 HMGXB3Q12766 1538 aa34.09■■■■□ 3.05
PSPC1-203ENST00000471658 TOP2AP11388 1531 aaKnown RBP34.07■■■■□ 3.04
PSPC1-203ENST00000471658 CCDC88BA6NC98 1476 aa33.76■■■■□ 3
PSPC1-203ENST00000471658 CADPSQ9ULU8 1353 aa33.32■■■□□ 2.92
PSPC1-203ENST00000471658 NESP48681 1621 aa33.3■■■□□ 2.92
PSPC1-203ENST00000471658 CFTRP13569 1480 aa33.27■■■□□ 2.92
PSPC1-203ENST00000471658 LAMC3Q9Y6N6 1575 aa33.16■■■□□ 2.9
PSPC1-203ENST00000471658 PRDM2Q13029 1718 aa32.97■■■□□ 2.87
PSPC1-203ENST00000471658 FANCD2Q9BXW9 1451 aa32.95■■■□□ 2.87
PSPC1-203ENST00000471658 PDS5BQ9NTI5 1447 aa32.95■■■□□ 2.86
PSPC1-203ENST00000471658 KIF21AQ7Z4S6 1674 aa32.83■■■□□ 2.85
PSPC1-203ENST00000471658 ABCC8Q09428 1581 aa32.81■■■□□ 2.84
PSPC1-203ENST00000471658 CEP164Q9UPV0 1460 aa32.79■■■□□ 2.84
PSPC1-203ENST00000471658 ERCC6Q03468 1493 aa32.77■■■□□ 2.84
PSPC1-203ENST00000471658 CHIC1Q5VXU3 224 aa32.7■■■□□ 2.83
PSPC1-203ENST00000471658 WRNQ14191 1432 aaPredicted RBP eCLIP32.67■■■□□ 2.821e-6■■■■■ 58.5
PSPC1-203ENST00000471658 URB2Q14146 1524 aaKnown RBP32.6■■■□□ 2.81
PSPC1-203ENST00000471658 CUX1P39880 1505 aa32.59■■■□□ 2.81
PSPC1-203ENST00000471658 MRC2Q9UBG0 1479 aa32.57■■■□□ 2.8
PSPC1-203ENST00000471658 SYNJ1O43426 1573 aa32.56■■■□□ 2.8
PSPC1-203ENST00000471658 TRIM41Q8WV44 630 aa32.53■■■□□ 2.8
PSPC1-203ENST00000471658 TOPBP1Q92547 1522 aa32.51■■■□□ 2.8
PSPC1-203ENST00000471658 DNMBPQ6XZF7 1577 aa32.49■■■□□ 2.79
PSPC1-203ENST00000471658 THOC2Q8NI27 1593 aaKnown RBP32.49■■■□□ 2.79
PSPC1-203ENST00000471658 TOP2BQ02880 1626 aa32.46■■■□□ 2.79
PSPC1-203ENST00000471658 BIVM-ERCC5R4GMW8 1640 aa32.43■■■□□ 2.78
PSPC1-203ENST00000471658 WDR62O43379 1518 aa32.41■■■□□ 2.78
PSPC1-203ENST00000471658 FGD5Q6ZNL6 1462 aa32.34■■■□□ 2.77
PSPC1-203ENST00000471658 POLA1P09884 1462 aaPredicted RBP32.3■■■□□ 2.76
PSPC1-203ENST00000471658 RAD54L2Q9Y4B4 1467 aa32.22■■■□□ 2.75
PSPC1-203ENST00000471658 CUX2O14529 1486 aa32.2■■■□□ 2.75
PSPC1-203ENST00000471658 SOGA1O94964 1423 aa32.2■■■□□ 2.75
PSPC1-203ENST00000471658 TARBP1Q13395 1621 aaKnown RBP32.07■■■□□ 2.72
PSPC1-203ENST00000471658 IFT140Q96RY7 1462 aa32.06■■■□□ 2.72
PSPC1-203ENST00000471658 ABCA10Q8WWZ4 1543 aa32.03■■■□□ 2.72
PSPC1-203ENST00000471658 RUSC2Q8N2Y8 1516 aa32.01■■■□□ 2.72
PSPC1-203ENST00000471658 TDRD9Q8NDG6 1382 aaKnown RBP31.98■■■□□ 2.71
PSPC1-203ENST00000471658 FAM9AQ8IZU1 332 aaPredicted RBP31.97■■■□□ 2.71
PSPC1-203ENST00000471658 ZNF608Q9ULD9 1512 aaPredicted RBP31.96■■■□□ 2.71
PSPC1-203ENST00000471658 WDR97A6NE52 1622 aa31.96■■■□□ 2.71
PSPC1-203ENST00000471658 AQRO60306 1485 aaKnown RBP eCLIP31.9■■■□□ 2.72e-11■■□□□ 13.8
PSPC1-203ENST00000471658 KIF27Q86VH2 1401 aa31.89■■■□□ 2.7
PSPC1-203ENST00000471658 ABCA5Q8WWZ7 1642 aa31.81■■■□□ 2.68
PSPC1-203ENST00000471658 GAPVD1Q14C86 1478 aa31.81■■■□□ 2.68
PSPC1-203ENST00000471658 EIF4G3O43432 1585 aaKnown RBP31.77■■■□□ 2.68
PSPC1-203ENST00000471658 EEA1Q15075 1411 aa31.75■■■□□ 2.67
PSPC1-203ENST00000471658 CSRNP3Q8WYN3 585 aa31.75■■■□□ 2.67
PSPC1-203ENST00000471658 IGF1RP08069 1367 aa31.74■■■□□ 2.67
PSPC1-203ENST00000471658 GRIN2BQ13224 1484 aa31.67■■■□□ 2.66
PSPC1-203ENST00000471658 PBRM1Q86U86 1689 aa31.64■■■□□ 2.66
PSPC1-203ENST00000471658 ERICH3Q5RHP9 1530 aa31.62■■■□□ 2.65
PSPC1-203ENST00000471658 EHMT2Q96KQ7 1210 aa31.57■■■□□ 2.64
PSPC1-203ENST00000471658 SNAPC4Q5SXM2 1469 aa31.56■■■□□ 2.64
PSPC1-203ENST00000471658 CARMIL1Q5VZK9 1371 aa31.55■■■□□ 2.64
PSPC1-203ENST00000471658 PRXQ9BXM0 1461 aa31.5■■■□□ 2.63
PSPC1-203ENST00000471658 LOC105371045A0A1W2PR82 267 aa31.47■■■□□ 2.63
PSPC1-203ENST00000471658 MAGI1Q96QZ7 1491 aaPredicted RBP31.46■■■□□ 2.63
PSPC1-203ENST00000471658 CUL7Q14999 1698 aa31.46■■■□□ 2.63
PSPC1-203ENST00000471658 ADAMTS12P58397 1594 aa31.45■■■□□ 2.63
PSPC1-203ENST00000471658 FHAD1B1AJZ9 1412 aa31.45■■■□□ 2.63
PSPC1-203ENST00000471658 RAPGEF2Q9Y4G8 1499 aa31.42■■■□□ 2.62
PSPC1-203ENST00000471658 FBLN2P98095 1184 aa31.4■■■□□ 2.62
PSPC1-203ENST00000471658 KIF21BO75037 1637 aa31.39■■■□□ 2.62
PSPC1-203ENST00000471658 CHMP7Q8WUX9 453 aaPredicted RBP31.37■■■□□ 2.61
PSPC1-203ENST00000471658 SYNJ2O15056 1496 aa31.35■■■□□ 2.61
PSPC1-203ENST00000471658 GOLGA3Q08378 1498 aa31.31■■■□□ 2.6
PSPC1-203ENST00000471658 GRIN2AQ12879 1464 aa31.28■■■□□ 2.6
PSPC1-203ENST00000471658 UBTFP17480 764 aaKnown RBP31.27■■■□□ 2.6
PSPC1-203ENST00000471658 CHD1O14646 1710 aa31.22■■■□□ 2.59
PSPC1-203ENST00000471658 CEP170Q5SW79 1584 aa31.11■■■□□ 2.57
PSPC1-203ENST00000471658 TNIKQ9UKE5 1360 aa31.1■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms