RNA–Protein interactions for RNA: ENST00000471494.5

RNF220-208, Transcript of ring finger protein 220, humanhuman

TSL 5

Gene RNF220, Length 720 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220-208ENST00000471494 NISCHQ9Y2I1 1504 aa57.8■■■■■ 6.84
RNF220-208ENST00000471494 CCDC180Q9P1Z9 1646 aa51.73■■■■■ 5.87
RNF220-208ENST00000471494 ABCC9O60706 1549 aa51.06■■■■■ 5.76
RNF220-208ENST00000471494 RB1CC1Q8TDY2 1594 aa48.92■■■■■ 5.42
RNF220-208ENST00000471494 NACADO15069 1562 aa48.71■■■■■ 5.39
RNF220-208ENST00000471494 DCAF8L2P0C7V8 631 aa48.48■■■■■ 5.35
RNF220-208ENST00000471494 MYO15BQ96JP2 1530 aa48.2■■■■■ 5.31
RNF220-208ENST00000471494 ZCCHC6Q5VYS8 1495 aaKnown RBP48.04■■■■■ 5.28
RNF220-208ENST00000471494 UNC13AQ9UPW8 1703 aa47.88■■■■■ 5.26
RNF220-208ENST00000471494 DCAF1Q9Y4B6 1507 aa47.8■■■■■ 5.24
RNF220-208ENST00000471494 PABPN1Q86U42 306 aaKnown RBP eCLIP47.56■■■■■ 5.2
RNF220-208ENST00000471494 BICRAQ9NZM4 1560 aa47.42■■■■■ 5.18
RNF220-208ENST00000471494 DNAJC5BQ9UF47 199 aa47.25■■■■■ 5.15
RNF220-208ENST00000471494 SCRIBQ14160 1630 aa47.13■■■■■ 5.14
RNF220-208ENST00000471494 SHROOM4Q9ULL8 1493 aa46.89■■■■■ 5.1
RNF220-208ENST00000471494 EIF4G1Q04637 1599 aaKnown RBP46.23■■■■■ 4.99
RNF220-208ENST00000471494 CC2D2AQ9P2K1 1620 aa46.19■■■■■ 4.98
RNF220-208ENST00000471494 CECR2Q9BXF3 1484 aa45.93■■■■■ 4.94
RNF220-208ENST00000471494 SMARCA4P51532 1647 aa45.02■■■■■ 4.8
RNF220-208ENST00000471494 NCAPD3P42695 1498 aa44.89■■■■■ 4.78
RNF220-208ENST00000471494 BAZ1AQ9NRL2 1556 aaPredicted RBP44.87■■■■■ 4.77
RNF220-208ENST00000471494 ATAD2BQ9ULI0 1458 aa44.85■■■■■ 4.77
RNF220-208ENST00000471494 SMARCA2P51531 1590 aa44.82■■■■■ 4.77
RNF220-208ENST00000471494 HMGXB3Q12766 1538 aa44.69■■■■■ 4.74
RNF220-208ENST00000471494 PEG3Q9GZU2 1588 aa44.56■■■■■ 4.72
RNF220-208ENST00000471494 MROH2BQ7Z745 1585 aa44.54■■■■■ 4.72
RNF220-208ENST00000471494 BAZ1BQ9UIG0 1483 aaKnown RBP44.49■■■■■ 4.71
RNF220-208ENST00000471494 ERCC6Q03468 1493 aa44.09■■■■■ 4.65
RNF220-208ENST00000471494 WIZO95785 1651 aa44.08■■■■■ 4.65
RNF220-208ENST00000471494 NESP48681 1621 aa44.02■■■■■ 4.64
RNF220-208ENST00000471494 LAMC3Q9Y6N6 1575 aa43.87■■■■■ 4.61
RNF220-208ENST00000471494 CUX2O14529 1486 aa43.8■■■■■ 4.6
RNF220-208ENST00000471494 RSF1Q96T23 1441 aaPredicted RBP43.8■■■■■ 4.6
RNF220-208ENST00000471494 KIF21AQ7Z4S6 1674 aa43.58■■■■■ 4.57
RNF220-208ENST00000471494 TOP2AP11388 1531 aaKnown RBP43.57■■■■■ 4.56
RNF220-208ENST00000471494 PDS5BQ9NTI5 1447 aa43.55■■■■■ 4.56
RNF220-208ENST00000471494 CADPSQ9ULU8 1353 aa43.54■■■■■ 4.56
RNF220-208ENST00000471494 THOC2Q8NI27 1593 aaKnown RBP43.52■■■■■ 4.56
RNF220-208ENST00000471494 CFTRP13569 1480 aa43.19■■■■■ 4.51
RNF220-208ENST00000471494 MRC2Q9UBG0 1479 aa43.16■■■■■ 4.5
RNF220-208ENST00000471494 CEP164Q9UPV0 1460 aa43.13■■■■■ 4.49
RNF220-208ENST00000471494 FANCD2Q9BXW9 1451 aa43.1■■■■■ 4.49
RNF220-208ENST00000471494 WDR62O43379 1518 aa43.04■■■■■ 4.48
RNF220-208ENST00000471494 DNAJC5Q9H3Z4 198 aa43.01■■■■■ 4.48
RNF220-208ENST00000471494 CCDC88BA6NC98 1476 aa43■■■■■ 4.47
RNF220-208ENST00000471494 PRDM2Q13029 1718 aa43■■■■■ 4.47
RNF220-208ENST00000471494 URB2Q14146 1524 aaKnown RBP42.69■■■■■ 4.42
RNF220-208ENST00000471494 TOPBP1Q92547 1522 aa42.35■■■■■ 4.37
RNF220-208ENST00000471494 ABCC8Q09428 1581 aa42.31■■■■■ 4.36
RNF220-208ENST00000471494 DNMBPQ6XZF7 1577 aa42.28■■■■■ 4.36
RNF220-208ENST00000471494 SUPT5HO00267 1087 aaKnown RBP42.28■■■■■ 4.36
RNF220-208ENST00000471494 IFT140Q96RY7 1462 aa42.22■■■■■ 4.35
RNF220-208ENST00000471494 ZNF608Q9ULD9 1512 aaPredicted RBP42.05■■■■■ 4.32
RNF220-208ENST00000471494 TARBP1Q13395 1621 aaKnown RBP41.95■■■■■ 4.31
RNF220-208ENST00000471494 POLA1P09884 1462 aaPredicted RBP41.95■■■■■ 4.31
RNF220-208ENST00000471494 EIF4G3O43432 1585 aaKnown RBP41.94■■■■■ 4.3
RNF220-208ENST00000471494 CUX1P39880 1505 aa41.83■■■■■ 4.29
RNF220-208ENST00000471494 OSCARQ8IYS5 282 aa41.82■■■■■ 4.29
RNF220-208ENST00000471494 FGD5Q6ZNL6 1462 aa41.78■■■■■ 4.28
RNF220-208ENST00000471494 RAD54L2Q9Y4B4 1467 aa41.75■■■■■ 4.27
RNF220-208ENST00000471494 SOGA1O94964 1423 aa41.74■■■■■ 4.27
RNF220-208ENST00000471494 AQRO60306 1485 aaKnown RBP eCLIP41.73■■■■■ 4.274e-7■■■■□ 23.8
RNF220-208ENST00000471494 WDR97A6NE52 1622 aa41.62■■■■■ 4.25
RNF220-208ENST00000471494 TDRD9Q8NDG6 1382 aaKnown RBP41.57■■■■■ 4.25
RNF220-208ENST00000471494 CHD1O14646 1710 aa41.56■■■■■ 4.24
RNF220-208ENST00000471494 TRIM41Q8WV44 630 aa41.41■■■■■ 4.22
RNF220-208ENST00000471494 BIVM-ERCC5R4GMW8 1640 aa41.38■■■■■ 4.21
RNF220-208ENST00000471494 SNAPC4Q5SXM2 1469 aa41.38■■■■■ 4.21
RNF220-208ENST00000471494 FBLN2P98095 1184 aa41.36■■■■■ 4.21
RNF220-208ENST00000471494 GRIN2BQ13224 1484 aa41.35■■■■■ 4.21
RNF220-208ENST00000471494 TOP2BQ02880 1626 aa41.35■■■■■ 4.21
RNF220-208ENST00000471494 WRNQ14191 1432 aaPredicted RBP eCLIP41.35■■■■■ 4.21
RNF220-208ENST00000471494 PBRM1Q86U86 1689 aa41.33■■■■■ 4.21
RNF220-208ENST00000471494 ABCA10Q8WWZ4 1543 aa41.33■■■■■ 4.21
RNF220-208ENST00000471494 RIMBP3CA6NJZ7 1639 aa41.31■■■■■ 4.2
RNF220-208ENST00000471494 RIMBP3BA6NNM3 1639 aa41.31■■■■■ 4.2
RNF220-208ENST00000471494 SYNJ1O43426 1573 aa41.31■■■■■ 4.2
RNF220-208ENST00000471494 MAGI1Q96QZ7 1491 aaPredicted RBP41.31■■■■■ 4.2
RNF220-208ENST00000471494 RIMBP3Q9UFD9 1639 aa41.31■■■■■ 4.2
RNF220-208ENST00000471494 GAPVD1Q14C86 1478 aa41.28■■■■■ 4.2
RNF220-208ENST00000471494 ABCA5Q8WWZ7 1642 aa41.27■■■■■ 4.2
RNF220-208ENST00000471494 ARHGEF11O15085 1522 aa41.22■■■■■ 4.19
RNF220-208ENST00000471494 SYNJ2O15056 1496 aa41.15■■■■■ 4.18
RNF220-208ENST00000471494 CHMP7Q8WUX9 453 aaPredicted RBP41.14■■■■■ 4.18
RNF220-208ENST00000471494 CLASP1Q7Z460 1538 aa41.02■■■■■ 4.16
RNF220-208ENST00000471494 ADAMTS12P58397 1594 aa40.92■■■■■ 4.14
RNF220-208ENST00000471494 ERICH3Q5RHP9 1530 aa40.84■■■■■ 4.13
RNF220-208ENST00000471494 GRIN2AQ12879 1464 aa40.83■■■■■ 4.13
RNF220-208ENST00000471494 ARAP1Q96P48 1450 aa40.83■■■■■ 4.13
RNF220-208ENST00000471494 CYB5RLQ6IPT4 315 aa40.81■■■■■ 4.12
RNF220-208ENST00000471494 FHAD1B1AJZ9 1412 aa40.77■■■■■ 4.12
RNF220-208ENST00000471494 CEP170Q5SW79 1584 aa40.66■■■■■ 4.1
RNF220-208ENST00000471494 NUP160Q12769 1436 aa40.64■■■■■ 4.1
RNF220-208ENST00000471494 KIF27Q86VH2 1401 aa40.53■■■■■ 4.08
RNF220-208ENST00000471494 SHROOM2Q13796 1616 aa40.45■■■■■ 4.07
RNF220-208ENST00000471494 CUL7Q14999 1698 aa40.43■■■■■ 4.06
RNF220-208ENST00000471494 ERCC6L2Q5T890 1561 aa40.4■■■■■ 4.06
RNF220-208ENST00000471494 IGF1RP08069 1367 aa40.36■■■■■ 4.05
RNF220-208ENST00000471494 RUSC2Q8N2Y8 1516 aa40.33■■■■■ 4.05
RNF220-208ENST00000471494 PRG4Q92954 1404 aaPredicted RBP40.2■■■■■ 4.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms