RNA–Protein interactions for RNA: ENST00000471417.5

LINC01140-204, Transcript of long intergenic non-protein coding RNA 1140, humanhuman

TSL 3

Gene LINC01140, Length 751 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01140-204ENST00000471417 NISCHQ9Y2I1 1504 aa23.83■■□□□ 1.41
LINC01140-204ENST00000471417 ABCC9O60706 1549 aa21.45■■□□□ 1.02
LINC01140-204ENST00000471417 CCDC180Q9P1Z9 1646 aa21.3■■□□□ 1
LINC01140-204ENST00000471417 RB1CC1Q8TDY2 1594 aa20.33■□□□□ 0.84
LINC01140-204ENST00000471417 DNAJC5BQ9UF47 199 aa20.23■□□□□ 0.83
LINC01140-204ENST00000471417 DCAF8L2P0C7V8 631 aa20.2■□□□□ 0.82
LINC01140-204ENST00000471417 NACADO15069 1562 aa20.18■□□□□ 0.82
LINC01140-204ENST00000471417 PABPN1Q86U42 306 aaKnown RBP eCLIP20.02■□□□□ 0.8
LINC01140-204ENST00000471417 MYO15BQ96JP2 1530 aa19.88■□□□□ 0.77
LINC01140-204ENST00000471417 UNC13AQ9UPW8 1703 aa19.88■□□□□ 0.77
LINC01140-204ENST00000471417 BICRAQ9NZM4 1560 aa19.79■□□□□ 0.76
LINC01140-204ENST00000471417 ZCCHC6Q5VYS8 1495 aaKnown RBP19.73■□□□□ 0.75
LINC01140-204ENST00000471417 DCAF1Q9Y4B6 1507 aa19.63■□□□□ 0.73
LINC01140-204ENST00000471417 SCRIBQ14160 1630 aa19.49■□□□□ 0.71
LINC01140-204ENST00000471417 SHROOM4Q9ULL8 1493 aa19.42■□□□□ 0.7
LINC01140-204ENST00000471417 CC2D2AQ9P2K1 1620 aa19.33■□□□□ 0.69
LINC01140-204ENST00000471417 CECR2Q9BXF3 1484 aa19.3■□□□□ 0.68
LINC01140-204ENST00000471417 EIF4G1Q04637 1599 aaKnown RBP19.28■□□□□ 0.68
LINC01140-204ENST00000471417 NCAPD3P42695 1498 aa18.67■□□□□ 0.58
LINC01140-204ENST00000471417 ATAD2BQ9ULI0 1458 aa18.63■□□□□ 0.57
LINC01140-204ENST00000471417 SMARCA4P51532 1647 aa18.57■□□□□ 0.56
LINC01140-204ENST00000471417 SMARCA2P51531 1590 aa18.52■□□□□ 0.56
LINC01140-204ENST00000471417 DNAJC5Q9H3Z4 198 aa18.52■□□□□ 0.56
LINC01140-204ENST00000471417 HMGXB3Q12766 1538 aa18.49■□□□□ 0.55
LINC01140-204ENST00000471417 ERCC6Q03468 1493 aa18.48■□□□□ 0.55
LINC01140-204ENST00000471417 BAZ1AQ9NRL2 1556 aaPredicted RBP18.46■□□□□ 0.55
LINC01140-204ENST00000471417 NESP48681 1621 aa18.44■□□□□ 0.54
LINC01140-204ENST00000471417 CUX2O14529 1486 aa18.43■□□□□ 0.54
LINC01140-204ENST00000471417 BAZ1BQ9UIG0 1483 aaKnown RBP18.42■□□□□ 0.54
LINC01140-204ENST00000471417 MROH2BQ7Z745 1585 aa18.39■□□□□ 0.53
LINC01140-204ENST00000471417 PEG3Q9GZU2 1588 aa18.38■□□□□ 0.53
LINC01140-204ENST00000471417 LAMC3Q9Y6N6 1575 aa18.21■□□□□ 0.51
LINC01140-204ENST00000471417 THOC2Q8NI27 1593 aaKnown RBP18.18■□□□□ 0.5
LINC01140-204ENST00000471417 WIZO95785 1651 aa18.15■□□□□ 0.5
LINC01140-204ENST00000471417 PDS5BQ9NTI5 1447 aa18.14■□□□□ 0.49
LINC01140-204ENST00000471417 KIF21AQ7Z4S6 1674 aa18.13■□□□□ 0.49
LINC01140-204ENST00000471417 CADPSQ9ULU8 1353 aa18.12■□□□□ 0.49
LINC01140-204ENST00000471417 RSF1Q96T23 1441 aaPredicted RBP18■□□□□ 0.47
LINC01140-204ENST00000471417 MRC2Q9UBG0 1479 aa17.99■□□□□ 0.47
LINC01140-204ENST00000471417 WDR62O43379 1518 aa17.93■□□□□ 0.46
LINC01140-204ENST00000471417 FANCD2Q9BXW9 1451 aa17.91■□□□□ 0.46
LINC01140-204ENST00000471417 CEP164Q9UPV0 1460 aa17.91■□□□□ 0.46
LINC01140-204ENST00000471417 CFTRP13569 1480 aa17.9■□□□□ 0.46
LINC01140-204ENST00000471417 TOP2AP11388 1531 aaKnown RBP17.88■□□□□ 0.45
LINC01140-204ENST00000471417 URB2Q14146 1524 aaKnown RBP17.78■□□□□ 0.44
LINC01140-204ENST00000471417 TRIM41Q8WV44 630 aa17.73■□□□□ 0.43
LINC01140-204ENST00000471417 CCDC88BA6NC98 1476 aa17.73■□□□□ 0.43
LINC01140-204ENST00000471417 OSCARQ8IYS5 282 aa17.64■□□□□ 0.41
LINC01140-204ENST00000471417 PRDM2Q13029 1718 aa17.61■□□□□ 0.41
LINC01140-204ENST00000471417 ZNF608Q9ULD9 1512 aaPredicted RBP17.58■□□□□ 0.41
LINC01140-204ENST00000471417 TOPBP1Q92547 1522 aa17.57■□□□□ 0.4
LINC01140-204ENST00000471417 IFT140Q96RY7 1462 aa17.55■□□□□ 0.4
LINC01140-204ENST00000471417 ABCC8Q09428 1581 aa17.47■□□□□ 0.39
LINC01140-204ENST00000471417 DNMBPQ6XZF7 1577 aa17.46■□□□□ 0.39
LINC01140-204ENST00000471417 AQRO60306 1485 aaKnown RBP eCLIP17.43■□□□□ 0.38
LINC01140-204ENST00000471417 EIF4G3O43432 1585 aaKnown RBP17.42■□□□□ 0.38
LINC01140-204ENST00000471417 TARBP1Q13395 1621 aaKnown RBP17.39■□□□□ 0.38
LINC01140-204ENST00000471417 POLA1P09884 1462 aaPredicted RBP17.39■□□□□ 0.37
LINC01140-204ENST00000471417 RIMBP3CA6NJZ7 1639 aa17.38■□□□□ 0.37
LINC01140-204ENST00000471417 RIMBP3BA6NNM3 1639 aa17.38■□□□□ 0.37
LINC01140-204ENST00000471417 RIMBP3Q9UFD9 1639 aa17.38■□□□□ 0.37
LINC01140-204ENST00000471417 RAD54L2Q9Y4B4 1467 aa17.37■□□□□ 0.37
LINC01140-204ENST00000471417 ARHGEF11O15085 1522 aa17.34■□□□□ 0.37
LINC01140-204ENST00000471417 SOGA1O94964 1423 aa17.32■□□□□ 0.36
LINC01140-204ENST00000471417 TDRD9Q8NDG6 1382 aaKnown RBP17.32■□□□□ 0.36
LINC01140-204ENST00000471417 FBLN2P98095 1184 aa17.32■□□□□ 0.36
LINC01140-204ENST00000471417 CHD1O14646 1710 aa17.28■□□□□ 0.36
LINC01140-204ENST00000471417 FGD5Q6ZNL6 1462 aa17.28■□□□□ 0.36
LINC01140-204ENST00000471417 CYB5RLQ6IPT4 315 aa17.27■□□□□ 0.36
LINC01140-204ENST00000471417 CUX1P39880 1505 aa17.26■□□□□ 0.35
LINC01140-204ENST00000471417 SUPT5HO00267 1087 aaKnown RBP17.24■□□□□ 0.35
LINC01140-204ENST00000471417 SNAPC4Q5SXM2 1469 aa17.21■□□□□ 0.35
LINC01140-204ENST00000471417 ARAP1Q96P48 1450 aa17.18■□□□□ 0.34
LINC01140-204ENST00000471417 CHMP7Q8WUX9 453 aaPredicted RBP17.17■□□□□ 0.34
LINC01140-204ENST00000471417 GRIN2BQ13224 1484 aa17.14■□□□□ 0.33
LINC01140-204ENST00000471417 WDR97A6NE52 1622 aa17.14■□□□□ 0.33
LINC01140-204ENST00000471417 MAGI1Q96QZ7 1491 aaPredicted RBP17.12■□□□□ 0.33
LINC01140-204ENST00000471417 CLASP1Q7Z460 1538 aa17.11■□□□□ 0.33
LINC01140-204ENST00000471417 SYNJ2O15056 1496 aa17.09■□□□□ 0.33
LINC01140-204ENST00000471417 GAPVD1Q14C86 1478 aa17.09■□□□□ 0.33
LINC01140-204ENST00000471417 TRHP20396 242 aaPredicted RBP17.07■□□□□ 0.32
LINC01140-204ENST00000471417 SYNJ1O43426 1573 aa17.06■□□□□ 0.32
LINC01140-204ENST00000471417 ABCA10Q8WWZ4 1543 aa17.06■□□□□ 0.32
LINC01140-204ENST00000471417 PBRM1Q86U86 1689 aa17.04■□□□□ 0.32
LINC01140-204ENST00000471417 ABCA5Q8WWZ7 1642 aa17.02■□□□□ 0.31
LINC01140-204ENST00000471417 WRNQ14191 1432 aaPredicted RBP eCLIP16.99■□□□□ 0.31
LINC01140-204ENST00000471417 TOP2BQ02880 1626 aa16.94■□□□□ 0.3
LINC01140-204ENST00000471417 GRIN2AQ12879 1464 aa16.93■□□□□ 0.3
LINC01140-204ENST00000471417 BIVM-ERCC5R4GMW8 1640 aa16.92■□□□□ 0.3
LINC01140-204ENST00000471417 ADAMTS12P58397 1594 aa16.89■□□□□ 0.3
LINC01140-204ENST00000471417 ERCC6L2Q5T890 1561 aa16.89■□□□□ 0.3
LINC01140-204ENST00000471417 NUP160Q12769 1436 aa16.88■□□□□ 0.29
LINC01140-204ENST00000471417 CEP170Q5SW79 1584 aa16.88■□□□□ 0.29
LINC01140-204ENST00000471417 FHAD1B1AJZ9 1412 aa16.87■□□□□ 0.29
LINC01140-204ENST00000471417 ERICH3Q5RHP9 1530 aa16.82■□□□□ 0.28
LINC01140-204ENST00000471417 SHROOM2Q13796 1616 aa16.78■□□□□ 0.28
LINC01140-204ENST00000471417 JPH4Q96JJ6 628 aa16.75■□□□□ 0.27
LINC01140-204ENST00000471417 PRG4Q92954 1404 aaPredicted RBP16.74■□□□□ 0.27
LINC01140-204ENST00000471417 IGF1RP08069 1367 aa16.67■□□□□ 0.26
LINC01140-204ENST00000471417 RUSC2Q8N2Y8 1516 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms