RNA–Protein interactions for RNA: ENST00000471344.1

COL1A1-203, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 1,192 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-203ENST00000471344 NISCHQ9Y2I1 1504 aa38.27■■■■□ 3.72
COL1A1-203ENST00000471344 CCDC180Q9P1Z9 1646 aa34.21■■■■□ 3.07
COL1A1-203ENST00000471344 ABCC9O60706 1549 aa33.99■■■■□ 3.03
COL1A1-203ENST00000471344 RB1CC1Q8TDY2 1594 aa32.4■■■□□ 2.78
COL1A1-203ENST00000471344 NACADO15069 1562 aa32.23■■■□□ 2.75
COL1A1-203ENST00000471344 DCAF8L2P0C7V8 631 aa32.14■■■□□ 2.74
COL1A1-203ENST00000471344 MYO15BQ96JP2 1530 aa31.85■■■□□ 2.69
COL1A1-203ENST00000471344 ZCCHC6Q5VYS8 1495 aaKnown RBP31.8■■■□□ 2.68
COL1A1-203ENST00000471344 UNC13AQ9UPW8 1703 aa31.8■■■□□ 2.68
COL1A1-203ENST00000471344 PABPN1Q86U42 306 aaKnown RBP eCLIP31.67■■■□□ 2.66
COL1A1-203ENST00000471344 DNAJC5BQ9UF47 199 aa31.63■■■□□ 2.65
COL1A1-203ENST00000471344 DCAF1Q9Y4B6 1507 aa31.57■■■□□ 2.64
COL1A1-203ENST00000471344 BICRAQ9NZM4 1560 aa31.54■■■□□ 2.64
COL1A1-203ENST00000471344 SCRIBQ14160 1630 aa31.27■■■□□ 2.6
COL1A1-203ENST00000471344 SHROOM4Q9ULL8 1493 aa30.99■■■□□ 2.55
COL1A1-203ENST00000471344 CC2D2AQ9P2K1 1620 aa30.71■■■□□ 2.51
COL1A1-203ENST00000471344 EIF4G1Q04637 1599 aaKnown RBP30.71■■■□□ 2.51
COL1A1-203ENST00000471344 CECR2Q9BXF3 1484 aa30.54■■■□□ 2.48
COL1A1-203ENST00000471344 SMARCA4P51532 1647 aa29.82■■■□□ 2.36
COL1A1-203ENST00000471344 NCAPD3P42695 1498 aa29.74■■■□□ 2.35
COL1A1-203ENST00000471344 ATAD2BQ9ULI0 1458 aa29.74■■■□□ 2.35
COL1A1-203ENST00000471344 BAZ1AQ9NRL2 1556 aaPredicted RBP29.66■■■□□ 2.34
COL1A1-203ENST00000471344 SMARCA2P51531 1590 aa29.64■■■□□ 2.34
COL1A1-203ENST00000471344 HMGXB3Q12766 1538 aa29.59■■■□□ 2.33
COL1A1-203ENST00000471344 MROH2BQ7Z745 1585 aa29.54■■■□□ 2.32
COL1A1-203ENST00000471344 PEG3Q9GZU2 1588 aa29.48■■■□□ 2.31
COL1A1-203ENST00000471344 BAZ1BQ9UIG0 1483 aaKnown RBP29.47■■■□□ 2.31
COL1A1-203ENST00000471344 NESP48681 1621 aa29.31■■■□□ 2.28
COL1A1-203ENST00000471344 ERCC6Q03468 1493 aa29.26■■■□□ 2.27
COL1A1-203ENST00000471344 WIZO95785 1651 aa29.22■■■□□ 2.27
COL1A1-203ENST00000471344 CUX2O14529 1486 aa29.09■■■□□ 2.25
COL1A1-203ENST00000471344 LAMC3Q9Y6N6 1575 aa29.05■■■□□ 2.24
COL1A1-203ENST00000471344 RSF1Q96T23 1441 aaPredicted RBP28.99■■■□□ 2.23
COL1A1-203ENST00000471344 THOC2Q8NI27 1593 aaKnown RBP28.95■■■□□ 2.22
COL1A1-203ENST00000471344 KIF21AQ7Z4S6 1674 aa28.95■■■□□ 2.22
COL1A1-203ENST00000471344 CADPSQ9ULU8 1353 aa28.86■■■□□ 2.21
COL1A1-203ENST00000471344 PDS5BQ9NTI5 1447 aa28.83■■■□□ 2.21
COL1A1-203ENST00000471344 TOP2AP11388 1531 aaKnown RBP28.82■■■□□ 2.2
COL1A1-203ENST00000471344 DNAJC5Q9H3Z4 198 aa28.73■■■□□ 2.19
COL1A1-203ENST00000471344 MRC2Q9UBG0 1479 aa28.63■■■□□ 2.17
COL1A1-203ENST00000471344 CFTRP13569 1480 aa28.61■■■□□ 2.17
COL1A1-203ENST00000471344 FANCD2Q9BXW9 1451 aa28.58■■■□□ 2.17
COL1A1-203ENST00000471344 CEP164Q9UPV0 1460 aa28.57■■■□□ 2.16
COL1A1-203ENST00000471344 WDR62O43379 1518 aa28.57■■■□□ 2.16
COL1A1-203ENST00000471344 CCDC88BA6NC98 1476 aa28.49■■■□□ 2.15
COL1A1-203ENST00000471344 PRDM2Q13029 1718 aa28.4■■■□□ 2.14
COL1A1-203ENST00000471344 URB2Q14146 1524 aaKnown RBP28.37■■■□□ 2.13
COL1A1-203ENST00000471344 TOPBP1Q92547 1522 aa28.08■■■□□ 2.09
COL1A1-203ENST00000471344 DNMBPQ6XZF7 1577 aa27.99■■■□□ 2.07
COL1A1-203ENST00000471344 ZNF608Q9ULD9 1512 aaPredicted RBP27.98■■■□□ 2.07
COL1A1-203ENST00000471344 IFT140Q96RY7 1462 aa27.95■■■□□ 2.07
COL1A1-203ENST00000471344 ABCC8Q09428 1581 aa27.92■■■□□ 2.06
COL1A1-203ENST00000471344 SUPT5HO00267 1087 aaKnown RBP27.91■■■□□ 2.06
COL1A1-203ENST00000471344 EIF4G3O43432 1585 aaKnown RBP27.85■■■□□ 2.05
COL1A1-203ENST00000471344 TARBP1Q13395 1621 aaKnown RBP27.84■■■□□ 2.05
COL1A1-203ENST00000471344 POLA1P09884 1462 aaPredicted RBP27.82■■■□□ 2.04
COL1A1-203ENST00000471344 OSCARQ8IYS5 282 aa27.75■■■□□ 2.03
COL1A1-203ENST00000471344 CUX1P39880 1505 aa27.74■■■□□ 2.03
COL1A1-203ENST00000471344 RAD54L2Q9Y4B4 1467 aa27.74■■■□□ 2.03
COL1A1-203ENST00000471344 AQRO60306 1485 aaKnown RBP eCLIP27.73■■■□□ 2.03
COL1A1-203ENST00000471344 FGD5Q6ZNL6 1462 aa27.69■■■□□ 2.02
COL1A1-203ENST00000471344 TRIM41Q8WV44 630 aa27.66■■■□□ 2.02
COL1A1-203ENST00000471344 SOGA1O94964 1423 aa27.65■■■□□ 2.02
COL1A1-203ENST00000471344 CHD1O14646 1710 aa27.6■■■□□ 2.01
COL1A1-203ENST00000471344 TDRD9Q8NDG6 1382 aaKnown RBP27.6■■■□□ 2.01
COL1A1-203ENST00000471344 WDR97A6NE52 1622 aa27.52■■■□□ 2
COL1A1-203ENST00000471344 RIMBP3CA6NJZ7 1639 aa27.5■■□□□ 1.99
COL1A1-203ENST00000471344 RIMBP3BA6NNM3 1639 aa27.5■■□□□ 1.99
COL1A1-203ENST00000471344 RIMBP3Q9UFD9 1639 aa27.5■■□□□ 1.99
COL1A1-203ENST00000471344 SNAPC4Q5SXM2 1469 aa27.47■■□□□ 1.99
COL1A1-203ENST00000471344 FBLN2P98095 1184 aa27.44■■□□□ 1.98
COL1A1-203ENST00000471344 ARHGEF11O15085 1522 aa27.42■■□□□ 1.98
COL1A1-203ENST00000471344 PBRM1Q86U86 1689 aa27.38■■□□□ 1.97
COL1A1-203ENST00000471344 SYNJ1O43426 1573 aa27.38■■□□□ 1.97
COL1A1-203ENST00000471344 GRIN2BQ13224 1484 aa27.38■■□□□ 1.97
COL1A1-203ENST00000471344 ABCA10Q8WWZ4 1543 aa27.36■■□□□ 1.97
COL1A1-203ENST00000471344 BIVM-ERCC5R4GMW8 1640 aa27.35■■□□□ 1.97
COL1A1-203ENST00000471344 ABCA5Q8WWZ7 1642 aa27.34■■□□□ 1.97
COL1A1-203ENST00000471344 MAGI1Q96QZ7 1491 aaPredicted RBP27.34■■□□□ 1.97
COL1A1-203ENST00000471344 TOP2BQ02880 1626 aa27.34■■□□□ 1.97
COL1A1-203ENST00000471344 GAPVD1Q14C86 1478 aa27.33■■□□□ 1.97
COL1A1-203ENST00000471344 WRNQ14191 1432 aaPredicted RBP eCLIP27.32■■□□□ 1.96
COL1A1-203ENST00000471344 SYNJ2O15056 1496 aa27.26■■□□□ 1.95
COL1A1-203ENST00000471344 CLASP1Q7Z460 1538 aa27.26■■□□□ 1.95
COL1A1-203ENST00000471344 CHMP7Q8WUX9 453 aaPredicted RBP27.24■■□□□ 1.95
COL1A1-203ENST00000471344 ARAP1Q96P48 1450 aa27.19■■□□□ 1.94
COL1A1-203ENST00000471344 CYB5RLQ6IPT4 315 aa27.15■■□□□ 1.94
COL1A1-203ENST00000471344 ADAMTS12P58397 1594 aa27.12■■□□□ 1.93
COL1A1-203ENST00000471344 GRIN2AQ12879 1464 aa27.06■■□□□ 1.92
COL1A1-203ENST00000471344 ERICH3Q5RHP9 1530 aa27■■□□□ 1.91
COL1A1-203ENST00000471344 CEP170Q5SW79 1584 aa27■■□□□ 1.91
COL1A1-203ENST00000471344 FHAD1B1AJZ9 1412 aa26.97■■□□□ 1.91
COL1A1-203ENST00000471344 NUP160Q12769 1436 aa26.94■■□□□ 1.9
COL1A1-203ENST00000471344 ERCC6L2Q5T890 1561 aa26.92■■□□□ 1.9
COL1A1-203ENST00000471344 SHROOM2Q13796 1616 aa26.83■■□□□ 1.88
COL1A1-203ENST00000471344 RUSC2Q8N2Y8 1516 aa26.75■■□□□ 1.87
COL1A1-203ENST00000471344 KIF27Q86VH2 1401 aa26.74■■□□□ 1.87
COL1A1-203ENST00000471344 TRHP20396 242 aaPredicted RBP26.74■■□□□ 1.87
COL1A1-203ENST00000471344 IGF1RP08069 1367 aa26.72■■□□□ 1.87
COL1A1-203ENST00000471344 CUL7Q14999 1698 aa26.69■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms