RNA–Protein interactions for RNA: ENST00000471250.5

U2AF1-208, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 2

Gene U2AF1, Length 1,676 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-208ENST00000471250 NISCHQ9Y2I1 1504 aa59■■■■■ 7.03
U2AF1-208ENST00000471250 CCDC180Q9P1Z9 1646 aa51.49■■■■■ 5.83
U2AF1-208ENST00000471250 ZCCHC6Q5VYS8 1495 aaKnown RBP49.55■■■■■ 5.52
U2AF1-208ENST00000471250 DCAF1Q9Y4B6 1507 aa48.82■■■■■ 5.41
U2AF1-208ENST00000471250 ABCC9O60706 1549 aa48.64■■■■■ 5.38
U2AF1-208ENST00000471250 DCAF8L2P0C7V8 631 aa48.63■■■■■ 5.38
U2AF1-208ENST00000471250 MYO15BQ96JP2 1530 aa48.26■■■■■ 5.32
U2AF1-208ENST00000471250 SHROOM4Q9ULL8 1493 aa48.01■■■■■ 5.28
U2AF1-208ENST00000471250 NACADO15069 1562 aa47.95■■■■■ 5.27
U2AF1-208ENST00000471250 RB1CC1Q8TDY2 1594 aa47.53■■■■■ 5.2
U2AF1-208ENST00000471250 SCRIBQ14160 1630 aa47.28■■■■■ 5.16
U2AF1-208ENST00000471250 UNC13AQ9UPW8 1703 aa46.6■■■■■ 5.05
U2AF1-208ENST00000471250 SUPT5HO00267 1087 aaKnown RBP46.18■■■■■ 4.98
U2AF1-208ENST00000471250 BICRAQ9NZM4 1560 aa46.11■■■■■ 4.97
U2AF1-208ENST00000471250 PABPN1Q86U42 306 aaKnown RBP eCLIP45.85■■■■■ 4.93
U2AF1-208ENST00000471250 CECR2Q9BXF3 1484 aa45.82■■■■■ 4.93
U2AF1-208ENST00000471250 RSF1Q96T23 1441 aaPredicted RBP45.74■■■■■ 4.91
U2AF1-208ENST00000471250 MROH2BQ7Z745 1585 aa45.56■■■■■ 4.88
U2AF1-208ENST00000471250 BAZ1AQ9NRL2 1556 aaPredicted RBP45.56■■■■■ 4.88
U2AF1-208ENST00000471250 SMARCA4P51532 1647 aa45.36■■■■■ 4.85
U2AF1-208ENST00000471250 WIZO95785 1651 aa45.19■■■■■ 4.83
U2AF1-208ENST00000471250 PEG3Q9GZU2 1588 aa44.83■■■■■ 4.77
U2AF1-208ENST00000471250 TOP2AP11388 1531 aaKnown RBP44.74■■■■■ 4.75
U2AF1-208ENST00000471250 EIF4G1Q04637 1599 aaKnown RBP44.71■■■■■ 4.75
U2AF1-208ENST00000471250 ATAD2BQ9ULI0 1458 aa44.62■■■■■ 4.73
U2AF1-208ENST00000471250 SMARCA2P51531 1590 aa44.59■■■■■ 4.73
U2AF1-208ENST00000471250 BAZ1BQ9UIG0 1483 aaKnown RBP44.35■■■■■ 4.69
U2AF1-208ENST00000471250 CCDC88BA6NC98 1476 aa44.27■■■■■ 4.68
U2AF1-208ENST00000471250 NCAPD3P42695 1498 aa44.25■■■■■ 4.67
U2AF1-208ENST00000471250 CHIC1Q5VXU3 224 aa44.25■■■■■ 4.67
U2AF1-208ENST00000471250 HMGXB3Q12766 1538 aa44.19■■■■■ 4.66
U2AF1-208ENST00000471250 CC2D2AQ9P2K1 1620 aa44.05■■■■■ 4.64
U2AF1-208ENST00000471250 TRIM41Q8WV44 630 aa43.46■■■■■ 4.55
U2AF1-208ENST00000471250 ABCC8Q09428 1581 aa43.3■■■■■ 4.52
U2AF1-208ENST00000471250 CFTRP13569 1480 aa43.25■■■■■ 4.51
U2AF1-208ENST00000471250 CADPSQ9ULU8 1353 aa43.1■■■■■ 4.49
U2AF1-208ENST00000471250 PRDM2Q13029 1718 aa43.07■■■■■ 4.49
U2AF1-208ENST00000471250 WRNQ14191 1432 aaPredicted RBP eCLIP43.04■■■■■ 4.48
U2AF1-208ENST00000471250 DNAJC5BQ9UF47 199 aa42.92■■■■■ 4.46
U2AF1-208ENST00000471250 SYNJ1O43426 1573 aa42.88■■■■■ 4.45
U2AF1-208ENST00000471250 LAMC3Q9Y6N6 1575 aa42.75■■■■■ 4.43
U2AF1-208ENST00000471250 TOP2BQ02880 1626 aa42.73■■■■■ 4.43
U2AF1-208ENST00000471250 NESP48681 1621 aa42.7■■■■■ 4.43
U2AF1-208ENST00000471250 BIVM-ERCC5R4GMW8 1640 aa42.7■■■■■ 4.43
U2AF1-208ENST00000471250 FAM9AQ8IZU1 332 aaPredicted RBP42.62■■■■■ 4.41
U2AF1-208ENST00000471250 FANCD2Q9BXW9 1451 aa42.62■■■■■ 4.41
U2AF1-208ENST00000471250 CUX1P39880 1505 aa42.61■■■■■ 4.41
U2AF1-208ENST00000471250 LOC105371045A0A1W2PR82 267 aa42.52■■■■■ 4.4
U2AF1-208ENST00000471250 SOGA1O94964 1423 aa42.49■■■■■ 4.39
U2AF1-208ENST00000471250 EEA1Q15075 1411 aa42.45■■■■■ 4.39
U2AF1-208ENST00000471250 PDS5BQ9NTI5 1447 aa42.4■■■■■ 4.38
U2AF1-208ENST00000471250 CEP164Q9UPV0 1460 aa42.35■■■■■ 4.37
U2AF1-208ENST00000471250 RUSC2Q8N2Y8 1516 aa42.34■■■■■ 4.37
U2AF1-208ENST00000471250 DNMBPQ6XZF7 1577 aa42.25■■■■■ 4.35
U2AF1-208ENST00000471250 KIF21AQ7Z4S6 1674 aa42.22■■■■■ 4.35
U2AF1-208ENST00000471250 CSRNP3Q8WYN3 585 aa42.19■■■■■ 4.34
U2AF1-208ENST00000471250 TOPBP1Q92547 1522 aa42.16■■■■■ 4.34
U2AF1-208ENST00000471250 FGD5Q6ZNL6 1462 aa42.14■■■■■ 4.34
U2AF1-208ENST00000471250 URB2Q14146 1524 aaKnown RBP42.09■■■■■ 4.33
U2AF1-208ENST00000471250 EHMT2Q96KQ7 1210 aa41.98■■■■■ 4.31
U2AF1-208ENST00000471250 KIF27Q86VH2 1401 aa41.97■■■■■ 4.31
U2AF1-208ENST00000471250 POLA1P09884 1462 aaPredicted RBP41.95■■■■■ 4.31
U2AF1-208ENST00000471250 KIF21BO75037 1637 aa41.9■■■■■ 4.3
U2AF1-208ENST00000471250 MRC2Q9UBG0 1479 aa41.87■■■■■ 4.29
U2AF1-208ENST00000471250 CUX2O14529 1486 aa41.85■■■■■ 4.29
U2AF1-208ENST00000471250 GOLGA3Q08378 1498 aa41.83■■■■■ 4.29
U2AF1-208ENST00000471250 RAD54L2Q9Y4B4 1467 aa41.8■■■■■ 4.28
U2AF1-208ENST00000471250 ABCA10Q8WWZ4 1543 aa41.79■■■■■ 4.28
U2AF1-208ENST00000471250 TNIKQ9UKE5 1360 aa41.71■■■■■ 4.27
U2AF1-208ENST00000471250 ERCC6Q03468 1493 aa41.7■■■■■ 4.27
U2AF1-208ENST00000471250 PRXQ9BXM0 1461 aa41.69■■■■■ 4.26
U2AF1-208ENST00000471250 WDR97A6NE52 1622 aa41.68■■■■■ 4.26
U2AF1-208ENST00000471250 WDR62O43379 1518 aa41.66■■■■■ 4.26
U2AF1-208ENST00000471250 RAPGEF2Q9Y4G8 1499 aa41.62■■■■■ 4.25
U2AF1-208ENST00000471250 ERICH3Q5RHP9 1530 aa41.62■■■■■ 4.25
U2AF1-208ENST00000471250 IGF1RP08069 1367 aa41.61■■■■■ 4.25
U2AF1-208ENST00000471250 UBTFP17480 764 aaKnown RBP41.61■■■■■ 4.25
U2AF1-208ENST00000471250 TARBP1Q13395 1621 aaKnown RBP41.54■■■■■ 4.24
U2AF1-208ENST00000471250 THOC2Q8NI27 1593 aaKnown RBP41.54■■■■■ 4.24
U2AF1-208ENST00000471250 ABCA5Q8WWZ7 1642 aa41.45■■■■■ 4.23
U2AF1-208ENST00000471250 CEP162Q5TB80 1403 aa41.45■■■■■ 4.23
U2AF1-208ENST00000471250 CARMIL1Q5VZK9 1371 aa41.39■■■■■ 4.22
U2AF1-208ENST00000471250 TDRD9Q8NDG6 1382 aaKnown RBP41.38■■■■■ 4.22
U2AF1-208ENST00000471250 IFT140Q96RY7 1462 aa41.36■■■■■ 4.21
U2AF1-208ENST00000471250 GAPVD1Q14C86 1478 aa41.35■■■■■ 4.21
U2AF1-208ENST00000471250 CUL7Q14999 1698 aa41.31■■■■■ 4.2
U2AF1-208ENST00000471250 PBRM1Q86U86 1689 aa41.14■■■■■ 4.18
U2AF1-208ENST00000471250 CLIP1P30622 1438 aa41.14■■■■■ 4.18
U2AF1-208ENST00000471250 AQRO60306 1485 aaKnown RBP eCLIP41.13■■■■■ 4.17
U2AF1-208ENST00000471250 ZNF608Q9ULD9 1512 aaPredicted RBP41.11■■■■■ 4.17
U2AF1-208ENST00000471250 GRIN2BQ13224 1484 aa41.04■■■■■ 4.16
U2AF1-208ENST00000471250 EIF4G3O43432 1585 aaKnown RBP40.98■■■■■ 4.15
U2AF1-208ENST00000471250 FHAD1B1AJZ9 1412 aa40.92■■■■■ 4.14
U2AF1-208ENST00000471250 ADAMTS12P58397 1594 aa40.91■■■■■ 4.14
U2AF1-208ENST00000471250 RANGAP1P46060 587 aaPredicted RBP40.89■■■■■ 4.14
U2AF1-208ENST00000471250 CTTNBP2Q8WZ74 1663 aa40.84■■■■■ 4.13
U2AF1-208ENST00000471250 VPS8Q8N3P4 1428 aa40.8■■■■■ 4.12
U2AF1-208ENST00000471250 ARAP1Q96P48 1450 aa40.78■■■■■ 4.12
U2AF1-208ENST00000471250 SNAPC4Q5SXM2 1469 aa40.76■■■■■ 4.12
U2AF1-208ENST00000471250 ARHGAP35Q9NRY4 1499 aa40.76■■■■■ 4.12
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms