RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 NISCHQ9Y2I1 1504 aa38.38■■■■□ 3.73
HDAC6-218ENST00000470942 CCDC180Q9P1Z9 1646 aa34.22■■■■□ 3.07
HDAC6-218ENST00000470942 ABCC9O60706 1549 aa33.74■■■□□ 2.99
HDAC6-218ENST00000470942 RB1CC1Q8TDY2 1594 aa32.33■■■□□ 2.77
HDAC6-218ENST00000470942 DCAF8L2P0C7V8 631 aa32.29■■■□□ 2.76
HDAC6-218ENST00000470942 NACADO15069 1562 aa32.21■■■□□ 2.75
HDAC6-218ENST00000470942 ZCCHC6Q5VYS8 1495 aaKnown RBP31.9■■■□□ 2.7
HDAC6-218ENST00000470942 MYO15BQ96JP2 1530 aa31.9■■■□□ 2.7
HDAC6-218ENST00000470942 DCAF1Q9Y4B6 1507 aa31.7■■■□□ 2.66
HDAC6-218ENST00000470942 UNC13AQ9UPW8 1703 aa31.63■■■□□ 2.65
HDAC6-218ENST00000470942 PABPN1Q86U42 306 aaKnown RBP eCLIP31.51■■■□□ 2.631e-7■■■□□ 16.2
HDAC6-218ENST00000470942 BICRAQ9NZM4 1560 aa31.34■■■□□ 2.61
HDAC6-218ENST00000470942 SCRIBQ14160 1630 aa31.25■■■□□ 2.59
HDAC6-218ENST00000470942 DNAJC5BQ9UF47 199 aa31.15■■■□□ 2.58
HDAC6-218ENST00000470942 SHROOM4Q9ULL8 1493 aa30.94■■■□□ 2.54
HDAC6-218ENST00000470942 EIF4G1Q04637 1599 aaKnown RBP30.54■■■□□ 2.48
HDAC6-218ENST00000470942 CC2D2AQ9P2K1 1620 aa30.49■■■□□ 2.47
HDAC6-218ENST00000470942 CECR2Q9BXF3 1484 aa30.31■■■□□ 2.44
HDAC6-218ENST00000470942 SMARCA4P51532 1647 aa29.84■■■□□ 2.37
HDAC6-218ENST00000470942 BAZ1AQ9NRL2 1556 aaPredicted RBP29.77■■■□□ 2.36
HDAC6-218ENST00000470942 NCAPD3P42695 1498 aa29.71■■■□□ 2.35
HDAC6-218ENST00000470942 ATAD2BQ9ULI0 1458 aa29.71■■■□□ 2.35
HDAC6-218ENST00000470942 SMARCA2P51531 1590 aa29.68■■■□□ 2.34
HDAC6-218ENST00000470942 MROH2BQ7Z745 1585 aa29.58■■■□□ 2.33
HDAC6-218ENST00000470942 HMGXB3Q12766 1538 aa29.55■■■□□ 2.32
HDAC6-218ENST00000470942 PEG3Q9GZU2 1588 aa29.5■■■□□ 2.31
HDAC6-218ENST00000470942 BAZ1BQ9UIG0 1483 aaKnown RBP29.48■■■□□ 2.31
HDAC6-218ENST00000470942 WIZO95785 1651 aa29.29■■■□□ 2.28
HDAC6-218ENST00000470942 RSF1Q96T23 1441 aaPredicted RBP29.15■■■□□ 2.26
HDAC6-218ENST00000470942 NESP48681 1621 aa29.12■■■□□ 2.25
HDAC6-218ENST00000470942 ERCC6Q03468 1493 aa29.1■■■□□ 2.25
HDAC6-218ENST00000470942 LAMC3Q9Y6N6 1575 aa28.99■■■□□ 2.23
HDAC6-218ENST00000470942 TOP2AP11388 1531 aaKnown RBP28.92■■■□□ 2.22
HDAC6-218ENST00000470942 CADPSQ9ULU8 1353 aa28.86■■■□□ 2.21
HDAC6-218ENST00000470942 CUX2O14529 1486 aa28.82■■■□□ 2.2
HDAC6-218ENST00000470942 PDS5BQ9NTI5 1447 aa28.81■■■□□ 2.2
HDAC6-218ENST00000470942 KIF21AQ7Z4S6 1674 aa28.8■■■□□ 2.2
HDAC6-218ENST00000470942 THOC2Q8NI27 1593 aaKnown RBP28.7■■■□□ 2.18
HDAC6-218ENST00000470942 CFTRP13569 1480 aa28.62■■■□□ 2.17
HDAC6-218ENST00000470942 CCDC88BA6NC98 1476 aa28.6■■■□□ 2.17
HDAC6-218ENST00000470942 FANCD2Q9BXW9 1451 aa28.54■■■□□ 2.16
HDAC6-218ENST00000470942 MRC2Q9UBG0 1479 aa28.53■■■□□ 2.16
HDAC6-218ENST00000470942 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
HDAC6-218ENST00000470942 PRDM2Q13029 1718 aa28.46■■■□□ 2.15
HDAC6-218ENST00000470942 WDR62O43379 1518 aa28.42■■■□□ 2.14
HDAC6-218ENST00000470942 SUPT5HO00267 1087 aaKnown RBP28.36■■■□□ 2.13
HDAC6-218ENST00000470942 URB2Q14146 1524 aaKnown RBP28.26■■■□□ 2.11
HDAC6-218ENST00000470942 DNAJC5Q9H3Z4 198 aa28.22■■■□□ 2.11
HDAC6-218ENST00000470942 TOPBP1Q92547 1522 aa28.06■■■□□ 2.08
HDAC6-218ENST00000470942 ABCC8Q09428 1581 aa28.04■■■□□ 2.08
HDAC6-218ENST00000470942 DNMBPQ6XZF7 1577 aa28.01■■■□□ 2.07
HDAC6-218ENST00000470942 IFT140Q96RY7 1462 aa27.93■■■□□ 2.06
HDAC6-218ENST00000470942 ZNF608Q9ULD9 1512 aaPredicted RBP27.83■■■□□ 2.05
HDAC6-218ENST00000470942 POLA1P09884 1462 aaPredicted RBP27.8■■■□□ 2.04
HDAC6-218ENST00000470942 TARBP1Q13395 1621 aaKnown RBP27.76■■■□□ 2.03
HDAC6-218ENST00000470942 CUX1P39880 1505 aa27.76■■■□□ 2.03
HDAC6-218ENST00000470942 EIF4G3O43432 1585 aaKnown RBP27.72■■■□□ 2.03
HDAC6-218ENST00000470942 FGD5Q6ZNL6 1462 aa27.71■■■□□ 2.03
HDAC6-218ENST00000470942 RAD54L2Q9Y4B4 1467 aa27.71■■■□□ 2.03
HDAC6-218ENST00000470942 SOGA1O94964 1423 aa27.71■■■□□ 2.03
HDAC6-218ENST00000470942 AQRO60306 1485 aaKnown RBP eCLIP27.67■■■□□ 2.02
HDAC6-218ENST00000470942 OSCARQ8IYS5 282 aa27.64■■■□□ 2.02
HDAC6-218ENST00000470942 TDRD9Q8NDG6 1382 aaKnown RBP27.59■■■□□ 2.01
HDAC6-218ENST00000470942 WRNQ14191 1432 aaPredicted RBP eCLIP27.51■■□□□ 1.99
HDAC6-218ENST00000470942 WDR97A6NE52 1622 aa27.51■■□□□ 1.99
HDAC6-218ENST00000470942 BIVM-ERCC5R4GMW8 1640 aa27.48■■□□□ 1.99
HDAC6-218ENST00000470942 TOP2BQ02880 1626 aa27.47■■□□□ 1.99
HDAC6-218ENST00000470942 SYNJ1O43426 1573 aa27.46■■□□□ 1.99
HDAC6-218ENST00000470942 CHD1O14646 1710 aa27.46■■□□□ 1.99
HDAC6-218ENST00000470942 FBLN2P98095 1184 aa27.45■■□□□ 1.98
HDAC6-218ENST00000470942 ABCA10Q8WWZ4 1543 aa27.41■■□□□ 1.98
HDAC6-218ENST00000470942 GRIN2BQ13224 1484 aa27.39■■□□□ 1.98
HDAC6-218ENST00000470942 SNAPC4Q5SXM2 1469 aa27.39■■□□□ 1.98
HDAC6-218ENST00000470942 GAPVD1Q14C86 1478 aa27.38■■□□□ 1.97
HDAC6-218ENST00000470942 PBRM1Q86U86 1689 aa27.36■■□□□ 1.97
HDAC6-218ENST00000470942 MAGI1Q96QZ7 1491 aaPredicted RBP27.33■■□□□ 1.97
HDAC6-218ENST00000470942 ABCA5Q8WWZ7 1642 aa27.33■■□□□ 1.97
HDAC6-218ENST00000470942 CHMP7Q8WUX9 453 aaPredicted RBP27.3■■□□□ 1.96
HDAC6-218ENST00000470942 TRIM41Q8WV44 630 aa27.28■■□□□ 1.96
HDAC6-218ENST00000470942 SYNJ2O15056 1496 aa27.23■■□□□ 1.95
HDAC6-218ENST00000470942 RIMBP3CA6NJZ7 1639 aa27.22■■□□□ 1.95
HDAC6-218ENST00000470942 RIMBP3BA6NNM3 1639 aa27.22■■□□□ 1.95
HDAC6-218ENST00000470942 RIMBP3Q9UFD9 1639 aa27.22■■□□□ 1.95
HDAC6-218ENST00000470942 ARHGEF11O15085 1522 aa27.16■■□□□ 1.94
HDAC6-218ENST00000470942 ERICH3Q5RHP9 1530 aa27.09■■□□□ 1.93
HDAC6-218ENST00000470942 ADAMTS12P58397 1594 aa27.09■■□□□ 1.93
HDAC6-218ENST00000470942 CLASP1Q7Z460 1538 aa27.08■■□□□ 1.93
HDAC6-218ENST00000470942 FHAD1B1AJZ9 1412 aa27.04■■□□□ 1.92
HDAC6-218ENST00000470942 GRIN2AQ12879 1464 aa27.04■■□□□ 1.92
HDAC6-218ENST00000470942 CYB5RLQ6IPT4 315 aa26.98■■□□□ 1.91
HDAC6-218ENST00000470942 KIF27Q86VH2 1401 aa26.96■■□□□ 1.91
HDAC6-218ENST00000470942 ARAP1Q96P48 1450 aa26.92■■□□□ 1.9
HDAC6-218ENST00000470942 CEP170Q5SW79 1584 aa26.92■■□□□ 1.9
HDAC6-218ENST00000470942 NUP160Q12769 1436 aa26.9■■□□□ 1.9
HDAC6-218ENST00000470942 IGF1RP08069 1367 aa26.86■■□□□ 1.89
HDAC6-218ENST00000470942 CUL7Q14999 1698 aa26.82■■□□□ 1.88
HDAC6-218ENST00000470942 SHROOM2Q13796 1616 aa26.74■■□□□ 1.87
HDAC6-218ENST00000470942 ERCC6L2Q5T890 1561 aa26.73■■□□□ 1.87
HDAC6-218ENST00000470942 CARMIL1Q5VZK9 1371 aa26.72■■□□□ 1.87
HDAC6-218ENST00000470942 RUSC2Q8N2Y8 1516 aa26.69■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms