RNA–Protein interactions for RNA: ENST00000470737.1

SEMA3F-208, Transcript of semaphorin 3F, humanhuman

TSL 5

Gene SEMA3F, Length 566 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3F-208ENST00000470737 NISCHQ9Y2I1 1504 aa34.82■■■■□ 3.16
SEMA3F-208ENST00000470737 ABCC9O60706 1549 aa31.45■■■□□ 2.63
SEMA3F-208ENST00000470737 CCDC180Q9P1Z9 1646 aa31.36■■■□□ 2.61
SEMA3F-208ENST00000470737 RB1CC1Q8TDY2 1594 aa29.92■■■□□ 2.38
SEMA3F-208ENST00000470737 NACADO15069 1562 aa29.67■■■□□ 2.34
SEMA3F-208ENST00000470737 DCAF8L2P0C7V8 631 aa29.52■■■□□ 2.32
SEMA3F-208ENST00000470737 DNAJC5BQ9UF47 199 aa29.52■■■□□ 2.32
SEMA3F-208ENST00000470737 PABPN1Q86U42 306 aaKnown RBP eCLIP29.24■■■□□ 2.27
SEMA3F-208ENST00000470737 UNC13AQ9UPW8 1703 aa29.22■■■□□ 2.27
SEMA3F-208ENST00000470737 MYO15BQ96JP2 1530 aa29.19■■■□□ 2.26
SEMA3F-208ENST00000470737 BICRAQ9NZM4 1560 aa28.97■■■□□ 2.23
SEMA3F-208ENST00000470737 ZCCHC6Q5VYS8 1495 aaKnown RBP28.83■■■□□ 2.21
SEMA3F-208ENST00000470737 DCAF1Q9Y4B6 1507 aa28.76■■■□□ 2.19
SEMA3F-208ENST00000470737 SHROOM4Q9ULL8 1493 aa28.65■■■□□ 2.18
SEMA3F-208ENST00000470737 SCRIBQ14160 1630 aa28.55■■■□□ 2.16
SEMA3F-208ENST00000470737 CC2D2AQ9P2K1 1620 aa28.41■■■□□ 2.14
SEMA3F-208ENST00000470737 CECR2Q9BXF3 1484 aa28.36■■■□□ 2.13
SEMA3F-208ENST00000470737 EIF4G1Q04637 1599 aaKnown RBP28.32■■■□□ 2.12
SEMA3F-208ENST00000470737 NCAPD3P42695 1498 aa27.35■■□□□ 1.97
SEMA3F-208ENST00000470737 DNAJC5Q9H3Z4 198 aa27.27■■□□□ 1.96
SEMA3F-208ENST00000470737 ATAD2BQ9ULI0 1458 aa27.25■■□□□ 1.95
SEMA3F-208ENST00000470737 ERCC6Q03468 1493 aa27.23■■□□□ 1.95
SEMA3F-208ENST00000470737 SMARCA2P51531 1590 aa27.22■■□□□ 1.95
SEMA3F-208ENST00000470737 SMARCA4P51532 1647 aa27.22■■□□□ 1.95
SEMA3F-208ENST00000470737 CUX2O14529 1486 aa27.19■■□□□ 1.94
SEMA3F-208ENST00000470737 HMGXB3Q12766 1538 aa27.17■■□□□ 1.94
SEMA3F-208ENST00000470737 BAZ1AQ9NRL2 1556 aaPredicted RBP27.08■■□□□ 1.93
SEMA3F-208ENST00000470737 BAZ1BQ9UIG0 1483 aaKnown RBP27.03■■□□□ 1.92
SEMA3F-208ENST00000470737 NESP48681 1621 aa26.95■■□□□ 1.91
SEMA3F-208ENST00000470737 PEG3Q9GZU2 1588 aa26.92■■□□□ 1.9
SEMA3F-208ENST00000470737 MROH2BQ7Z745 1585 aa26.81■■□□□ 1.88
SEMA3F-208ENST00000470737 LAMC3Q9Y6N6 1575 aa26.8■■□□□ 1.88
SEMA3F-208ENST00000470737 THOC2Q8NI27 1593 aaKnown RBP26.73■■□□□ 1.87
SEMA3F-208ENST00000470737 PDS5BQ9NTI5 1447 aa26.66■■□□□ 1.86
SEMA3F-208ENST00000470737 KIF21AQ7Z4S6 1674 aa26.66■■□□□ 1.86
SEMA3F-208ENST00000470737 CADPSQ9ULU8 1353 aa26.53■■□□□ 1.84
SEMA3F-208ENST00000470737 WIZO95785 1651 aa26.51■■□□□ 1.83
SEMA3F-208ENST00000470737 MRC2Q9UBG0 1479 aa26.42■■□□□ 1.82
SEMA3F-208ENST00000470737 WDR62O43379 1518 aa26.34■■□□□ 1.81
SEMA3F-208ENST00000470737 CEP164Q9UPV0 1460 aa26.3■■□□□ 1.8
SEMA3F-208ENST00000470737 FANCD2Q9BXW9 1451 aa26.24■■□□□ 1.79
SEMA3F-208ENST00000470737 RSF1Q96T23 1441 aaPredicted RBP26.21■■□□□ 1.79
SEMA3F-208ENST00000470737 TOP2AP11388 1531 aaKnown RBP26.19■■□□□ 1.78
SEMA3F-208ENST00000470737 CFTRP13569 1480 aa26.18■■□□□ 1.78
SEMA3F-208ENST00000470737 TRIM41Q8WV44 630 aa26.09■■□□□ 1.77
SEMA3F-208ENST00000470737 PRDM2Q13029 1718 aa26■■□□□ 1.75
SEMA3F-208ENST00000470737 URB2Q14146 1524 aaKnown RBP26■■□□□ 1.75
SEMA3F-208ENST00000470737 OSCARQ8IYS5 282 aa25.92■■□□□ 1.74
SEMA3F-208ENST00000470737 CCDC88BA6NC98 1476 aa25.86■■□□□ 1.73
SEMA3F-208ENST00000470737 IFT140Q96RY7 1462 aa25.78■■□□□ 1.72
SEMA3F-208ENST00000470737 TOPBP1Q92547 1522 aa25.72■■□□□ 1.71
SEMA3F-208ENST00000470737 ABCC8Q09428 1581 aa25.71■■□□□ 1.71
SEMA3F-208ENST00000470737 ZNF608Q9ULD9 1512 aaPredicted RBP25.69■■□□□ 1.7
SEMA3F-208ENST00000470737 DNMBPQ6XZF7 1577 aa25.64■■□□□ 1.69
SEMA3F-208ENST00000470737 RIMBP3CA6NJZ7 1639 aa25.59■■□□□ 1.69
SEMA3F-208ENST00000470737 RIMBP3BA6NNM3 1639 aa25.59■■□□□ 1.69
SEMA3F-208ENST00000470737 RIMBP3Q9UFD9 1639 aa25.59■■□□□ 1.69
SEMA3F-208ENST00000470737 EIF4G3O43432 1585 aaKnown RBP25.59■■□□□ 1.69
SEMA3F-208ENST00000470737 ARHGEF11O15085 1522 aa25.49■■□□□ 1.67
SEMA3F-208ENST00000470737 TARBP1Q13395 1621 aaKnown RBP25.48■■□□□ 1.67
SEMA3F-208ENST00000470737 AQRO60306 1485 aaKnown RBP eCLIP25.47■■□□□ 1.67
SEMA3F-208ENST00000470737 CHD1O14646 1710 aa25.45■■□□□ 1.66
SEMA3F-208ENST00000470737 POLA1P09884 1462 aaPredicted RBP25.45■■□□□ 1.66
SEMA3F-208ENST00000470737 FBLN2P98095 1184 aa25.39■■□□□ 1.66
SEMA3F-208ENST00000470737 RAD54L2Q9Y4B4 1467 aa25.34■■□□□ 1.65
SEMA3F-208ENST00000470737 SOGA1O94964 1423 aa25.34■■□□□ 1.65
SEMA3F-208ENST00000470737 CYB5RLQ6IPT4 315 aa25.32■■□□□ 1.64
SEMA3F-208ENST00000470737 TDRD9Q8NDG6 1382 aaKnown RBP25.29■■□□□ 1.64
SEMA3F-208ENST00000470737 WDR97A6NE52 1622 aa25.28■■□□□ 1.64
SEMA3F-208ENST00000470737 FGD5Q6ZNL6 1462 aa25.28■■□□□ 1.64
SEMA3F-208ENST00000470737 SNAPC4Q5SXM2 1469 aa25.22■■□□□ 1.63
SEMA3F-208ENST00000470737 ARAP1Q96P48 1450 aa25.21■■□□□ 1.63
SEMA3F-208ENST00000470737 CUX1P39880 1505 aa25.21■■□□□ 1.63
SEMA3F-208ENST00000470737 CHMP7Q8WUX9 453 aaPredicted RBP25.17■■□□□ 1.62
SEMA3F-208ENST00000470737 MAGI1Q96QZ7 1491 aaPredicted RBP25.16■■□□□ 1.62
SEMA3F-208ENST00000470737 GRIN2BQ13224 1484 aa25.15■■□□□ 1.62
SEMA3F-208ENST00000470737 SYNJ1O43426 1573 aa25.14■■□□□ 1.62
SEMA3F-208ENST00000470737 TRHP20396 242 aaPredicted RBP25.13■■□□□ 1.61
SEMA3F-208ENST00000470737 CLASP1Q7Z460 1538 aa25.11■■□□□ 1.61
SEMA3F-208ENST00000470737 SYNJ2O15056 1496 aa25.08■■□□□ 1.6
SEMA3F-208ENST00000470737 PBRM1Q86U86 1689 aa25.07■■□□□ 1.6
SEMA3F-208ENST00000470737 GAPVD1Q14C86 1478 aa25.04■■□□□ 1.6
SEMA3F-208ENST00000470737 SUPT5HO00267 1087 aaKnown RBP25.01■■□□□ 1.59
SEMA3F-208ENST00000470737 ABCA10Q8WWZ4 1543 aa24.98■■□□□ 1.59
SEMA3F-208ENST00000470737 ABCA5Q8WWZ7 1642 aa24.96■■□□□ 1.59
SEMA3F-208ENST00000470737 WRNQ14191 1432 aaPredicted RBP eCLIP24.87■■□□□ 1.57
SEMA3F-208ENST00000470737 GRIN2AQ12879 1464 aa24.82■■□□□ 1.56
SEMA3F-208ENST00000470737 BIVM-ERCC5R4GMW8 1640 aa24.81■■□□□ 1.56
SEMA3F-208ENST00000470737 TOP2BQ02880 1626 aa24.8■■□□□ 1.56
SEMA3F-208ENST00000470737 ADAMTS12P58397 1594 aa24.79■■□□□ 1.56
SEMA3F-208ENST00000470737 CEP170Q5SW79 1584 aa24.71■■□□□ 1.55
SEMA3F-208ENST00000470737 FHAD1B1AJZ9 1412 aa24.71■■□□□ 1.55
SEMA3F-208ENST00000470737 NUP160Q12769 1436 aa24.71■■□□□ 1.55
SEMA3F-208ENST00000470737 ERCC6L2Q5T890 1561 aa24.68■■□□□ 1.54
SEMA3F-208ENST00000470737 ERICH3Q5RHP9 1530 aa24.68■■□□□ 1.54
SEMA3F-208ENST00000470737 SHROOM2Q13796 1616 aa24.63■■□□□ 1.53
SEMA3F-208ENST00000470737 AEBP2Q6ZN18 517 aaPredicted RBP24.54■■□□□ 1.52
SEMA3F-208ENST00000470737 PRG4Q92954 1404 aaPredicted RBP24.51■■□□□ 1.51
SEMA3F-208ENST00000470737 JPH4Q96JJ6 628 aa24.48■■□□□ 1.51
SEMA3F-208ENST00000470737 RUSC2Q8N2Y8 1516 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms