RNA–Protein interactions for RNA: ENST00000470695.1

IFT88-205, Transcript of intraflagellar transport 88, humanhuman

TSL 2

Gene IFT88, Length 407 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-205ENST00000470695 NISCHQ9Y2I1 1504 aa29.12■■■□□ 2.25
IFT88-205ENST00000470695 CCDC180Q9P1Z9 1646 aa25.6■■□□□ 1.69
IFT88-205ENST00000470695 ZCCHC6Q5VYS8 1495 aaKnown RBP24.39■■□□□ 1.5
IFT88-205ENST00000470695 ABCC9O60706 1549 aa24.36■■□□□ 1.49
IFT88-205ENST00000470695 DCAF1Q9Y4B6 1507 aa24.17■■□□□ 1.46
IFT88-205ENST00000470695 MYO15BQ96JP2 1530 aa24.04■■□□□ 1.44
IFT88-205ENST00000470695 DCAF8L2P0C7V8 631 aa24■■□□□ 1.43
IFT88-205ENST00000470695 NACADO15069 1562 aa23.93■■□□□ 1.42
IFT88-205ENST00000470695 RB1CC1Q8TDY2 1594 aa23.78■■□□□ 1.4
IFT88-205ENST00000470695 SCRIBQ14160 1630 aa23.35■■□□□ 1.33
IFT88-205ENST00000470695 SHROOM4Q9ULL8 1493 aa23.33■■□□□ 1.33
IFT88-205ENST00000470695 UNC13AQ9UPW8 1703 aa23.2■■□□□ 1.3
IFT88-205ENST00000470695 BICRAQ9NZM4 1560 aa23.01■■□□□ 1.27
IFT88-205ENST00000470695 PABPN1Q86U42 306 aaKnown RBP eCLIP22.87■■□□□ 1.25
IFT88-205ENST00000470695 CECR2Q9BXF3 1484 aa22.58■■□□□ 1.2
IFT88-205ENST00000470695 BAZ1AQ9NRL2 1556 aaPredicted RBP22.53■■□□□ 1.2
IFT88-205ENST00000470695 SMARCA4P51532 1647 aa22.44■■□□□ 1.18
IFT88-205ENST00000470695 MROH2BQ7Z745 1585 aa22.43■■□□□ 1.18
IFT88-205ENST00000470695 RSF1Q96T23 1441 aaPredicted RBP22.43■■□□□ 1.18
IFT88-205ENST00000470695 EIF4G1Q04637 1599 aaKnown RBP22.36■■□□□ 1.17
IFT88-205ENST00000470695 SUPT5HO00267 1087 aaKnown RBP22.31■■□□□ 1.16
IFT88-205ENST00000470695 PEG3Q9GZU2 1588 aa22.25■■□□□ 1.15
IFT88-205ENST00000470695 WIZO95785 1651 aa22.21■■□□□ 1.15
IFT88-205ENST00000470695 SMARCA2P51531 1590 aa22.18■■□□□ 1.14
IFT88-205ENST00000470695 ATAD2BQ9ULI0 1458 aa22.16■■□□□ 1.14
IFT88-205ENST00000470695 CC2D2AQ9P2K1 1620 aa22.09■■□□□ 1.13
IFT88-205ENST00000470695 NCAPD3P42695 1498 aa22.08■■□□□ 1.12
IFT88-205ENST00000470695 TOP2AP11388 1531 aaKnown RBP22.04■■□□□ 1.12
IFT88-205ENST00000470695 HMGXB3Q12766 1538 aa22.02■■□□□ 1.12
IFT88-205ENST00000470695 BAZ1BQ9UIG0 1483 aaKnown RBP22.01■■□□□ 1.11
IFT88-205ENST00000470695 AEBP2Q6ZN18 517 aaPredicted RBP21.96■■□□□ 1.11
IFT88-205ENST00000470695 CCDC88BA6NC98 1476 aa21.77■■□□□ 1.08
IFT88-205ENST00000470695 DNAJC5BQ9UF47 199 aa21.77■■□□□ 1.08
IFT88-205ENST00000470695 CFTRP13569 1480 aa21.47■■□□□ 1.03
IFT88-205ENST00000470695 CADPSQ9ULU8 1353 aa21.46■■□□□ 1.03
IFT88-205ENST00000470695 LAMC3Q9Y6N6 1575 aa21.38■■□□□ 1.01
IFT88-205ENST00000470695 PRDM2Q13029 1718 aa21.34■■□□□ 1.01
IFT88-205ENST00000470695 NESP48681 1621 aa21.27■■□□□ 1
IFT88-205ENST00000470695 CHIC1Q5VXU3 224 aa21.25■□□□□ 0.99
IFT88-205ENST00000470695 PDS5BQ9NTI5 1447 aa21.21■□□□□ 0.99
IFT88-205ENST00000470695 FANCD2Q9BXW9 1451 aa21.19■□□□□ 0.98
IFT88-205ENST00000470695 ABCC8Q09428 1581 aa21.14■□□□□ 0.98
IFT88-205ENST00000470695 WRNQ14191 1432 aaPredicted RBP eCLIP21.13■□□□□ 0.97
IFT88-205ENST00000470695 CEP164Q9UPV0 1460 aa21.1■□□□□ 0.97
IFT88-205ENST00000470695 TRIM41Q8WV44 630 aa21.08■□□□□ 0.97
IFT88-205ENST00000470695 KIF21AQ7Z4S6 1674 aa21.04■□□□□ 0.96
IFT88-205ENST00000470695 TOP2BQ02880 1626 aa21.02■□□□□ 0.96
IFT88-205ENST00000470695 SYNJ1O43426 1573 aa21.02■□□□□ 0.95
IFT88-205ENST00000470695 CUX1P39880 1505 aa21.01■□□□□ 0.95
IFT88-205ENST00000470695 BIVM-ERCC5R4GMW8 1640 aa21■□□□□ 0.95
IFT88-205ENST00000470695 DNMBPQ6XZF7 1577 aa20.97■□□□□ 0.95
IFT88-205ENST00000470695 ERCC6Q03468 1493 aa20.95■□□□□ 0.94
IFT88-205ENST00000470695 MRC2Q9UBG0 1479 aa20.94■□□□□ 0.94
IFT88-205ENST00000470695 URB2Q14146 1524 aaKnown RBP20.93■□□□□ 0.94
IFT88-205ENST00000470695 TOPBP1Q92547 1522 aa20.93■□□□□ 0.94
IFT88-205ENST00000470695 WDR62O43379 1518 aa20.85■□□□□ 0.93
IFT88-205ENST00000470695 THOC2Q8NI27 1593 aaKnown RBP20.84■□□□□ 0.93
IFT88-205ENST00000470695 FGD5Q6ZNL6 1462 aa20.83■□□□□ 0.93
IFT88-205ENST00000470695 POLA1P09884 1462 aaPredicted RBP20.79■□□□□ 0.92
IFT88-205ENST00000470695 EEA1Q15075 1411 aa20.73■□□□□ 0.91
IFT88-205ENST00000470695 SOGA1O94964 1423 aa20.72■□□□□ 0.91
IFT88-205ENST00000470695 ABCA10Q8WWZ4 1543 aa20.69■□□□□ 0.9
IFT88-205ENST00000470695 CUX2O14529 1486 aa20.67■□□□□ 0.9
IFT88-205ENST00000470695 RAD54L2Q9Y4B4 1467 aa20.67■□□□□ 0.9
IFT88-205ENST00000470695 IFT140Q96RY7 1462 aa20.65■□□□□ 0.9
IFT88-205ENST00000470695 KIF27Q86VH2 1401 aa20.65■□□□□ 0.9
IFT88-205ENST00000470695 TARBP1Q13395 1621 aaKnown RBP20.64■□□□□ 0.9
IFT88-205ENST00000470695 WDR97A6NE52 1622 aa20.63■□□□□ 0.89
IFT88-205ENST00000470695 RUSC2Q8N2Y8 1516 aa20.62■□□□□ 0.89
IFT88-205ENST00000470695 FAM9AQ8IZU1 332 aaPredicted RBP20.57■□□□□ 0.88
IFT88-205ENST00000470695 CSRNP3Q8WYN3 585 aa20.57■□□□□ 0.88
IFT88-205ENST00000470695 ABCA5Q8WWZ7 1642 aa20.53■□□□□ 0.88
IFT88-205ENST00000470695 TDRD9Q8NDG6 1382 aaKnown RBP20.5■□□□□ 0.87
IFT88-205ENST00000470695 GAPVD1Q14C86 1478 aa20.5■□□□□ 0.87
IFT88-205ENST00000470695 IGF1RP08069 1367 aa20.48■□□□□ 0.87
IFT88-205ENST00000470695 ERICH3Q5RHP9 1530 aa20.46■□□□□ 0.87
IFT88-205ENST00000470695 ZNF608Q9ULD9 1512 aaPredicted RBP20.45■□□□□ 0.86
IFT88-205ENST00000470695 AQRO60306 1485 aaKnown RBP eCLIP20.43■□□□□ 0.86
IFT88-205ENST00000470695 KIF21BO75037 1637 aa20.43■□□□□ 0.86
IFT88-205ENST00000470695 PRXQ9BXM0 1461 aa20.43■□□□□ 0.86
IFT88-205ENST00000470695 GRIN2BQ13224 1484 aa20.41■□□□□ 0.86
IFT88-205ENST00000470695 EIF4G3O43432 1585 aaKnown RBP20.41■□□□□ 0.86
IFT88-205ENST00000470695 CUL7Q14999 1698 aa20.38■□□□□ 0.85
IFT88-205ENST00000470695 PBRM1Q86U86 1689 aa20.38■□□□□ 0.85
IFT88-205ENST00000470695 CARMIL1Q5VZK9 1371 aa20.37■□□□□ 0.85
IFT88-205ENST00000470695 GOLGA3Q08378 1498 aa20.36■□□□□ 0.85
IFT88-205ENST00000470695 LOC105371045A0A1W2PR82 267 aa20.34■□□□□ 0.85
IFT88-205ENST00000470695 RAPGEF2Q9Y4G8 1499 aa20.33■□□□□ 0.85
IFT88-205ENST00000470695 MAGI1Q96QZ7 1491 aaPredicted RBP20.3■□□□□ 0.84
IFT88-205ENST00000470695 FHAD1B1AJZ9 1412 aa20.29■□□□□ 0.84
IFT88-205ENST00000470695 ADAMTS12P58397 1594 aa20.28■□□□□ 0.84
IFT88-205ENST00000470695 SNAPC4Q5SXM2 1469 aa20.26■□□□□ 0.83
IFT88-205ENST00000470695 TNIKQ9UKE5 1360 aa20.24■□□□□ 0.83
IFT88-205ENST00000470695 UBTFP17480 764 aaKnown RBP20.22■□□□□ 0.83
IFT88-205ENST00000470695 SYNJ2O15056 1496 aa20.2■□□□□ 0.82
IFT88-205ENST00000470695 EHMT2Q96KQ7 1210 aa20.2■□□□□ 0.82
IFT88-205ENST00000470695 GRIN2AQ12879 1464 aa20.14■□□□□ 0.81
IFT88-205ENST00000470695 CHMP7Q8WUX9 453 aaPredicted RBP20.13■□□□□ 0.81
IFT88-205ENST00000470695 CTTNBP2Q8WZ74 1663 aa20.07■□□□□ 0.8
IFT88-205ENST00000470695 CEP162Q5TB80 1403 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms