RNA–Protein interactions for RNA: ENST00000470060.3

RN7SL228P-201, Transcript of RNA, 7SL, cytoplasmic 228, pseudogene, humanhuman

BASIC

Gene RN7SL228P, Length 303 nt, Biotype misc RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RN7SL228P-201ENST00000470060 NISCHQ9Y2I1 1504 aa19.13■□□□□ 0.65
RN7SL228P-201ENST00000470060 CCDC180Q9P1Z9 1646 aa17.21■□□□□ 0.35
RN7SL228P-201ENST00000470060 ABCC9O60706 1549 aa17.14■□□□□ 0.33
RN7SL228P-201ENST00000470060 RB1CC1Q8TDY2 1594 aa16.36■□□□□ 0.21
RN7SL228P-201ENST00000470060 NACADO15069 1562 aa16.26■□□□□ 0.19
RN7SL228P-201ENST00000470060 MYO15BQ96JP2 1530 aa16.09■□□□□ 0.17
RN7SL228P-201ENST00000470060 DNAJC5BQ9UF47 199 aa16.04■□□□□ 0.16
RN7SL228P-201ENST00000470060 DCAF8L2P0C7V8 631 aa16.02■□□□□ 0.16
RN7SL228P-201ENST00000470060 UNC13AQ9UPW8 1703 aa15.93■□□□□ 0.14
RN7SL228P-201ENST00000470060 PABPN1Q86U42 306 aaKnown RBP eCLIP15.91■□□□□ 0.14
RN7SL228P-201ENST00000470060 ZCCHC6Q5VYS8 1495 aaKnown RBP15.89■□□□□ 0.13
RN7SL228P-201ENST00000470060 BICRAQ9NZM4 1560 aa15.87■□□□□ 0.13
RN7SL228P-201ENST00000470060 DCAF1Q9Y4B6 1507 aa15.85■□□□□ 0.13
RN7SL228P-201ENST00000470060 SHROOM4Q9ULL8 1493 aa15.76■□□□□ 0.11
RN7SL228P-201ENST00000470060 SCRIBQ14160 1630 aa15.62■□□□□ 0.09
RN7SL228P-201ENST00000470060 CC2D2AQ9P2K1 1620 aa15.5■□□□□ 0.07
RN7SL228P-201ENST00000470060 EIF4G1Q04637 1599 aaKnown RBP15.49■□□□□ 0.07
RN7SL228P-201ENST00000470060 CECR2Q9BXF3 1484 aa15.46■□□□□ 0.07
RN7SL228P-201ENST00000470060 NCAPD3P42695 1498 aa15.01□□□□□ -0.01
RN7SL228P-201ENST00000470060 ATAD2BQ9ULI0 1458 aa14.95□□□□□ -0.02
RN7SL228P-201ENST00000470060 SMARCA4P51532 1647 aa14.93□□□□□ -0.02
RN7SL228P-201ENST00000470060 HMGXB3Q12766 1538 aa14.92□□□□□ -0.02
RN7SL228P-201ENST00000470060 SMARCA2P51531 1590 aa14.92□□□□□ -0.02
RN7SL228P-201ENST00000470060 BAZ1AQ9NRL2 1556 aaPredicted RBP14.87□□□□□ -0.03
RN7SL228P-201ENST00000470060 CUX2O14529 1486 aa14.85□□□□□ -0.03
RN7SL228P-201ENST00000470060 PEG3Q9GZU2 1588 aa14.82□□□□□ -0.04
RN7SL228P-201ENST00000470060 ERCC6Q03468 1493 aa14.82□□□□□ -0.04
RN7SL228P-201ENST00000470060 BAZ1BQ9UIG0 1483 aaKnown RBP14.81□□□□□ -0.04
RN7SL228P-201ENST00000470060 DNAJC5Q9H3Z4 198 aa14.77□□□□□ -0.05
RN7SL228P-201ENST00000470060 NESP48681 1621 aa14.72□□□□□ -0.05
RN7SL228P-201ENST00000470060 MROH2BQ7Z745 1585 aa14.72□□□□□ -0.05
RN7SL228P-201ENST00000470060 LAMC3Q9Y6N6 1575 aa14.68□□□□□ -0.06
RN7SL228P-201ENST00000470060 THOC2Q8NI27 1593 aaKnown RBP14.64□□□□□ -0.07
RN7SL228P-201ENST00000470060 PDS5BQ9NTI5 1447 aa14.58□□□□□ -0.08
RN7SL228P-201ENST00000470060 KIF21AQ7Z4S6 1674 aa14.53□□□□□ -0.08
RN7SL228P-201ENST00000470060 CADPSQ9ULU8 1353 aa14.53□□□□□ -0.08
RN7SL228P-201ENST00000470060 WIZO95785 1651 aa14.52□□□□□ -0.08
RN7SL228P-201ENST00000470060 MRC2Q9UBG0 1479 aa14.46□□□□□ -0.09
RN7SL228P-201ENST00000470060 WDR62O43379 1518 aa14.45□□□□□ -0.1
RN7SL228P-201ENST00000470060 RSF1Q96T23 1441 aaPredicted RBP14.41□□□□□ -0.1
RN7SL228P-201ENST00000470060 TOP2AP11388 1531 aaKnown RBP14.4□□□□□ -0.1
RN7SL228P-201ENST00000470060 CEP164Q9UPV0 1460 aa14.39□□□□□ -0.11
RN7SL228P-201ENST00000470060 CFTRP13569 1480 aa14.38□□□□□ -0.11
RN7SL228P-201ENST00000470060 FANCD2Q9BXW9 1451 aa14.36□□□□□ -0.11
RN7SL228P-201ENST00000470060 URB2Q14146 1524 aaKnown RBP14.24□□□□□ -0.13
RN7SL228P-201ENST00000470060 PRDM2Q13029 1718 aa14.21□□□□□ -0.13
RN7SL228P-201ENST00000470060 CCDC88BA6NC98 1476 aa14.19□□□□□ -0.14
RN7SL228P-201ENST00000470060 IFT140Q96RY7 1462 aa14.12□□□□□ -0.15
RN7SL228P-201ENST00000470060 TOPBP1Q92547 1522 aa14.1□□□□□ -0.15
RN7SL228P-201ENST00000470060 ABCC8Q09428 1581 aa14.09□□□□□ -0.15
RN7SL228P-201ENST00000470060 OSCARQ8IYS5 282 aa14.08□□□□□ -0.16
RN7SL228P-201ENST00000470060 TRIM41Q8WV44 630 aa14.07□□□□□ -0.16
RN7SL228P-201ENST00000470060 DNMBPQ6XZF7 1577 aa14.06□□□□□ -0.16
RN7SL228P-201ENST00000470060 ZNF608Q9ULD9 1512 aaPredicted RBP14.05□□□□□ -0.16
RN7SL228P-201ENST00000470060 EIF4G3O43432 1585 aaKnown RBP14.01□□□□□ -0.17
RN7SL228P-201ENST00000470060 TARBP1Q13395 1621 aaKnown RBP13.97□□□□□ -0.17
RN7SL228P-201ENST00000470060 POLA1P09884 1462 aaPredicted RBP13.95□□□□□ -0.18
RN7SL228P-201ENST00000470060 RIMBP3CA6NJZ7 1639 aa13.93□□□□□ -0.18
RN7SL228P-201ENST00000470060 RIMBP3BA6NNM3 1639 aa13.93□□□□□ -0.18
RN7SL228P-201ENST00000470060 RIMBP3Q9UFD9 1639 aa13.93□□□□□ -0.18
RN7SL228P-201ENST00000470060 AQRO60306 1485 aaKnown RBP eCLIP13.92□□□□□ -0.18
RN7SL228P-201ENST00000470060 ARHGEF11O15085 1522 aa13.9□□□□□ -0.18
RN7SL228P-201ENST00000470060 WDR97A6NE52 1622 aa13.9□□□□□ -0.19
RN7SL228P-201ENST00000470060 CHD1O14646 1710 aa13.87□□□□□ -0.19
RN7SL228P-201ENST00000470060 RAD54L2Q9Y4B4 1467 aa13.87□□□□□ -0.19
RN7SL228P-201ENST00000470060 SOGA1O94964 1423 aa13.86□□□□□ -0.19
RN7SL228P-201ENST00000470060 FGD5Q6ZNL6 1462 aa13.86□□□□□ -0.19
RN7SL228P-201ENST00000470060 CUX1P39880 1505 aa13.84□□□□□ -0.19
RN7SL228P-201ENST00000470060 TDRD9Q8NDG6 1382 aaKnown RBP13.82□□□□□ -0.2
RN7SL228P-201ENST00000470060 SNAPC4Q5SXM2 1469 aa13.8□□□□□ -0.2
RN7SL228P-201ENST00000470060 MAGI1Q96QZ7 1491 aaPredicted RBP13.8□□□□□ -0.2
RN7SL228P-201ENST00000470060 FBLN2P98095 1184 aa13.77□□□□□ -0.21
RN7SL228P-201ENST00000470060 GRIN2BQ13224 1484 aa13.77□□□□□ -0.21
RN7SL228P-201ENST00000470060 ARAP1Q96P48 1450 aa13.77□□□□□ -0.21
RN7SL228P-201ENST00000470060 CLASP1Q7Z460 1538 aa13.76□□□□□ -0.21
RN7SL228P-201ENST00000470060 SYNJ1O43426 1573 aa13.75□□□□□ -0.21
RN7SL228P-201ENST00000470060 SYNJ2O15056 1496 aa13.74□□□□□ -0.21
RN7SL228P-201ENST00000470060 ABCA10Q8WWZ4 1543 aa13.73□□□□□ -0.21
RN7SL228P-201ENST00000470060 CYB5RLQ6IPT4 315 aa13.72□□□□□ -0.21
RN7SL228P-201ENST00000470060 GAPVD1Q14C86 1478 aa13.71□□□□□ -0.21
RN7SL228P-201ENST00000470060 ABCA5Q8WWZ7 1642 aa13.71□□□□□ -0.22
RN7SL228P-201ENST00000470060 PBRM1Q86U86 1689 aa13.7□□□□□ -0.22
RN7SL228P-201ENST00000470060 CHMP7Q8WUX9 453 aaPredicted RBP13.7□□□□□ -0.22
RN7SL228P-201ENST00000470060 SUPT5HO00267 1087 aaKnown RBP13.67□□□□□ -0.22
RN7SL228P-201ENST00000470060 WRNQ14191 1432 aaPredicted RBP eCLIP13.64□□□□□ -0.23
RN7SL228P-201ENST00000470060 TOP2BQ02880 1626 aa13.64□□□□□ -0.23
RN7SL228P-201ENST00000470060 BIVM-ERCC5R4GMW8 1640 aa13.64□□□□□ -0.23
RN7SL228P-201ENST00000470060 ADAMTS12P58397 1594 aa13.61□□□□□ -0.23
RN7SL228P-201ENST00000470060 GRIN2AQ12879 1464 aa13.6□□□□□ -0.23
RN7SL228P-201ENST00000470060 TRHP20396 242 aaPredicted RBP13.57□□□□□ -0.24
RN7SL228P-201ENST00000470060 NUP160Q12769 1436 aa13.56□□□□□ -0.24
RN7SL228P-201ENST00000470060 ERICH3Q5RHP9 1530 aa13.55□□□□□ -0.24
RN7SL228P-201ENST00000470060 FHAD1B1AJZ9 1412 aa13.55□□□□□ -0.24
RN7SL228P-201ENST00000470060 CEP170Q5SW79 1584 aa13.54□□□□□ -0.24
RN7SL228P-201ENST00000470060 SHROOM2Q13796 1616 aa13.51□□□□□ -0.25
RN7SL228P-201ENST00000470060 ERCC6L2Q5T890 1561 aa13.49□□□□□ -0.25
RN7SL228P-201ENST00000470060 RUSC2Q8N2Y8 1516 aa13.42□□□□□ -0.26
RN7SL228P-201ENST00000470060 PRG4Q92954 1404 aaPredicted RBP13.39□□□□□ -0.27
RN7SL228P-201ENST00000470060 CUL7Q14999 1698 aa13.36□□□□□ -0.27
RN7SL228P-201ENST00000470060 JPH4Q96JJ6 628 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms