RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 NISCHQ9Y2I1 1504 aa32.93■■■□□ 2.86
CPSF4-210ENST00000469897 ABCC9O60706 1549 aa29.53■■■□□ 2.32
CPSF4-210ENST00000469897 CCDC180Q9P1Z9 1646 aa29.31■■■□□ 2.28
CPSF4-210ENST00000469897 DCAF8L2P0C7V8 631 aa28.08■■■□□ 2.09
CPSF4-210ENST00000469897 RB1CC1Q8TDY2 1594 aa27.99■■■□□ 2.07
CPSF4-210ENST00000469897 NACADO15069 1562 aa27.83■■■□□ 2.05
CPSF4-210ENST00000469897 DNAJC5BQ9UF47 199 aa27.79■■■□□ 2.04
CPSF4-210ENST00000469897 PABPN1Q86U42 306 aaKnown RBP eCLIP27.66■■■□□ 2.02
CPSF4-210ENST00000469897 MYO15BQ96JP2 1530 aa27.45■■□□□ 1.98
CPSF4-210ENST00000469897 ZCCHC6Q5VYS8 1495 aaKnown RBP27.25■■□□□ 1.95
CPSF4-210ENST00000469897 BICRAQ9NZM4 1560 aa27.18■■□□□ 1.94
CPSF4-210ENST00000469897 UNC13AQ9UPW8 1703 aa27.18■■□□□ 1.94
CPSF4-210ENST00000469897 DCAF1Q9Y4B6 1507 aa27.13■■□□□ 1.93
CPSF4-210ENST00000469897 SCRIBQ14160 1630 aa26.86■■□□□ 1.89
CPSF4-210ENST00000469897 SHROOM4Q9ULL8 1493 aa26.75■■□□□ 1.87
CPSF4-210ENST00000469897 CECR2Q9BXF3 1484 aa26.57■■□□□ 1.84
CPSF4-210ENST00000469897 CC2D2AQ9P2K1 1620 aa26.56■■□□□ 1.84
CPSF4-210ENST00000469897 EIF4G1Q04637 1599 aaKnown RBP26.52■■□□□ 1.84
CPSF4-210ENST00000469897 NCAPD3P42695 1498 aa25.79■■□□□ 1.72
CPSF4-210ENST00000469897 ATAD2BQ9ULI0 1458 aa25.72■■□□□ 1.71
CPSF4-210ENST00000469897 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
CPSF4-210ENST00000469897 SMARCA2P51531 1590 aa25.56■■□□□ 1.68
CPSF4-210ENST00000469897 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
CPSF4-210ENST00000469897 HMGXB3Q12766 1538 aa25.47■■□□□ 1.67
CPSF4-210ENST00000469897 ERCC6Q03468 1493 aa25.47■■□□□ 1.67
CPSF4-210ENST00000469897 BAZ1BQ9UIG0 1483 aaKnown RBP25.44■■□□□ 1.66
CPSF4-210ENST00000469897 DNAJC5Q9H3Z4 198 aa25.43■■□□□ 1.66
CPSF4-210ENST00000469897 MROH2BQ7Z745 1585 aa25.4■■□□□ 1.66
CPSF4-210ENST00000469897 NESP48681 1621 aa25.37■■□□□ 1.65
CPSF4-210ENST00000469897 PEG3Q9GZU2 1588 aa25.33■■□□□ 1.65
CPSF4-210ENST00000469897 CUX2O14529 1486 aa25.32■■□□□ 1.64
CPSF4-210ENST00000469897 LAMC3Q9Y6N6 1575 aa25.08■■□□□ 1.61
CPSF4-210ENST00000469897 CADPSQ9ULU8 1353 aa25.06■■□□□ 1.6
CPSF4-210ENST00000469897 PDS5BQ9NTI5 1447 aa25.06■■□□□ 1.6
CPSF4-210ENST00000469897 WIZO95785 1651 aa25.04■■□□□ 1.6
CPSF4-210ENST00000469897 RSF1Q96T23 1441 aaPredicted RBP24.96■■□□□ 1.59
CPSF4-210ENST00000469897 THOC2Q8NI27 1593 aaKnown RBP24.93■■□□□ 1.58
CPSF4-210ENST00000469897 KIF21AQ7Z4S6 1674 aa24.85■■□□□ 1.57
CPSF4-210ENST00000469897 MRC2Q9UBG0 1479 aa24.78■■□□□ 1.56
CPSF4-210ENST00000469897 CFTRP13569 1480 aa24.73■■□□□ 1.55
CPSF4-210ENST00000469897 FANCD2Q9BXW9 1451 aa24.72■■□□□ 1.55
CPSF4-210ENST00000469897 TOP2AP11388 1531 aaKnown RBP24.71■■□□□ 1.55
CPSF4-210ENST00000469897 CEP164Q9UPV0 1460 aa24.7■■□□□ 1.54
CPSF4-210ENST00000469897 WDR62O43379 1518 aa24.66■■□□□ 1.54
CPSF4-210ENST00000469897 CCDC88BA6NC98 1476 aa24.56■■□□□ 1.52
CPSF4-210ENST00000469897 URB2Q14146 1524 aaKnown RBP24.5■■□□□ 1.51
CPSF4-210ENST00000469897 OSCARQ8IYS5 282 aa24.39■■□□□ 1.49
CPSF4-210ENST00000469897 TRIM41Q8WV44 630 aa24.39■■□□□ 1.49
CPSF4-210ENST00000469897 IFT140Q96RY7 1462 aa24.23■■□□□ 1.47
CPSF4-210ENST00000469897 TOPBP1Q92547 1522 aa24.23■■□□□ 1.47
CPSF4-210ENST00000469897 ZNF608Q9ULD9 1512 aaPredicted RBP24.22■■□□□ 1.47
CPSF4-210ENST00000469897 ABCC8Q09428 1581 aa24.17■■□□□ 1.46
CPSF4-210ENST00000469897 PRDM2Q13029 1718 aa24.14■■□□□ 1.45
CPSF4-210ENST00000469897 SUPT5HO00267 1087 aaKnown RBP24.09■■□□□ 1.45
CPSF4-210ENST00000469897 DNMBPQ6XZF7 1577 aa24.08■■□□□ 1.45
CPSF4-210ENST00000469897 AQRO60306 1485 aaKnown RBP eCLIP24.07■■□□□ 1.448e-7■■■■■ 31.4
CPSF4-210ENST00000469897 FBLN2P98095 1184 aa24■■□□□ 1.43
CPSF4-210ENST00000469897 POLA1P09884 1462 aaPredicted RBP24■■□□□ 1.43
CPSF4-210ENST00000469897 SOGA1O94964 1423 aa23.99■■□□□ 1.43
CPSF4-210ENST00000469897 RAD54L2Q9Y4B4 1467 aa23.99■■□□□ 1.43
CPSF4-210ENST00000469897 TDRD9Q8NDG6 1382 aaKnown RBP23.97■■□□□ 1.43
CPSF4-210ENST00000469897 TARBP1Q13395 1621 aaKnown RBP23.94■■□□□ 1.42
CPSF4-210ENST00000469897 EIF4G3O43432 1585 aaKnown RBP23.94■■□□□ 1.42
CPSF4-210ENST00000469897 FGD5Q6ZNL6 1462 aa23.86■■□□□ 1.41
CPSF4-210ENST00000469897 CYB5RLQ6IPT4 315 aa23.85■■□□□ 1.41
CPSF4-210ENST00000469897 CUX1P39880 1505 aa23.83■■□□□ 1.41
CPSF4-210ENST00000469897 RIMBP3CA6NJZ7 1639 aa23.82■■□□□ 1.4
CPSF4-210ENST00000469897 RIMBP3BA6NNM3 1639 aa23.82■■□□□ 1.4
CPSF4-210ENST00000469897 RIMBP3Q9UFD9 1639 aa23.82■■□□□ 1.4
CPSF4-210ENST00000469897 ARHGEF11O15085 1522 aa23.81■■□□□ 1.4
CPSF4-210ENST00000469897 CHMP7Q8WUX9 453 aaPredicted RBP23.8■■□□□ 1.4
CPSF4-210ENST00000469897 SNAPC4Q5SXM2 1469 aa23.73■■□□□ 1.39
CPSF4-210ENST00000469897 GRIN2BQ13224 1484 aa23.69■■□□□ 1.38
CPSF4-210ENST00000469897 CHD1O14646 1710 aa23.68■■□□□ 1.38
CPSF4-210ENST00000469897 MAGI1Q96QZ7 1491 aaPredicted RBP23.63■■□□□ 1.37
CPSF4-210ENST00000469897 GAPVD1Q14C86 1478 aa23.62■■□□□ 1.37
CPSF4-210ENST00000469897 WDR97A6NE52 1622 aa23.62■■□□□ 1.37
CPSF4-210ENST00000469897 ARAP1Q96P48 1450 aa23.6■■□□□ 1.37
CPSF4-210ENST00000469897 SYNJ2O15056 1496 aa23.59■■□□□ 1.37
CPSF4-210ENST00000469897 TRHP20396 242 aaPredicted RBP23.57■■□□□ 1.36
CPSF4-210ENST00000469897 ABCA10Q8WWZ4 1543 aa23.57■■□□□ 1.36
CPSF4-210ENST00000469897 WRNQ14191 1432 aaPredicted RBP eCLIP23.57■■□□□ 1.36
CPSF4-210ENST00000469897 CLASP1Q7Z460 1538 aa23.51■■□□□ 1.35
CPSF4-210ENST00000469897 SYNJ1O43426 1573 aa23.5■■□□□ 1.35
CPSF4-210ENST00000469897 ABCA5Q8WWZ7 1642 aa23.43■■□□□ 1.34
CPSF4-210ENST00000469897 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
CPSF4-210ENST00000469897 PBRM1Q86U86 1689 aa23.39■■□□□ 1.34
CPSF4-210ENST00000469897 GRIN2AQ12879 1464 aa23.36■■□□□ 1.33
CPSF4-210ENST00000469897 FHAD1B1AJZ9 1412 aa23.34■■□□□ 1.33
CPSF4-210ENST00000469897 BIVM-ERCC5R4GMW8 1640 aa23.34■■□□□ 1.33
CPSF4-210ENST00000469897 NUP160Q12769 1436 aa23.29■■□□□ 1.32
CPSF4-210ENST00000469897 ADAMTS12P58397 1594 aa23.26■■□□□ 1.31
CPSF4-210ENST00000469897 ERICH3Q5RHP9 1530 aa23.24■■□□□ 1.31
CPSF4-210ENST00000469897 CEP170Q5SW79 1584 aa23.24■■□□□ 1.31
CPSF4-210ENST00000469897 ERCC6L2Q5T890 1561 aa23.23■■□□□ 1.31
CPSF4-210ENST00000469897 JPH4Q96JJ6 628 aa23.22■■□□□ 1.31
CPSF4-210ENST00000469897 IGF1RP08069 1367 aa23.14■■□□□ 1.3
CPSF4-210ENST00000469897 PRG4Q92954 1404 aaPredicted RBP23.14■■□□□ 1.29
CPSF4-210ENST00000469897 KIF27Q86VH2 1401 aa23.08■■□□□ 1.29
CPSF4-210ENST00000469897 SHROOM2Q13796 1616 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms