RNA–Protein interactions for RNA: ENST00000469867.1

FAM228B-203, Transcript of family with sequence similarity 228 member B, humanhuman

TSL 1 (best)

Gene FAM228B, Length 2,495 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM228B-203ENST00000469867 NISCHQ9Y2I1 1504 aa28.58■■■□□ 2.17
FAM228B-203ENST00000469867 ABCC9O60706 1549 aa25.56■■□□□ 1.68
FAM228B-203ENST00000469867 CCDC180Q9P1Z9 1646 aa25.51■■□□□ 1.67
FAM228B-203ENST00000469867 RB1CC1Q8TDY2 1594 aa24.28■■□□□ 1.48
FAM228B-203ENST00000469867 DCAF8L2P0C7V8 631 aa24.25■■□□□ 1.47
FAM228B-203ENST00000469867 NACADO15069 1562 aa24.13■■□□□ 1.45
FAM228B-203ENST00000469867 DNAJC5BQ9UF47 199 aa23.91■■□□□ 1.42
FAM228B-203ENST00000469867 PABPN1Q86U42 306 aaKnown RBP eCLIP23.87■■□□□ 1.41
FAM228B-203ENST00000469867 MYO15BQ96JP2 1530 aa23.79■■□□□ 1.4
FAM228B-203ENST00000469867 UNC13AQ9UPW8 1703 aa23.75■■□□□ 1.39
FAM228B-203ENST00000469867 ZCCHC6Q5VYS8 1495 aaKnown RBP23.7■■□□□ 1.38
FAM228B-203ENST00000469867 BICRAQ9NZM4 1560 aa23.59■■□□□ 1.37
FAM228B-203ENST00000469867 DCAF1Q9Y4B6 1507 aa23.54■■□□□ 1.36
FAM228B-203ENST00000469867 SCRIBQ14160 1630 aa23.38■■□□□ 1.33
FAM228B-203ENST00000469867 SHROOM4Q9ULL8 1493 aa23.19■■□□□ 1.3
FAM228B-203ENST00000469867 CC2D2AQ9P2K1 1620 aa23.04■■□□□ 1.28
FAM228B-203ENST00000469867 EIF4G1Q04637 1599 aaKnown RBP23.02■■□□□ 1.27
FAM228B-203ENST00000469867 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
FAM228B-203ENST00000469867 NCAPD3P42695 1498 aa22.3■■□□□ 1.16
FAM228B-203ENST00000469867 ATAD2BQ9ULI0 1458 aa22.27■■□□□ 1.16
FAM228B-203ENST00000469867 SMARCA4P51532 1647 aa22.26■■□□□ 1.15
FAM228B-203ENST00000469867 SMARCA2P51531 1590 aa22.19■■□□□ 1.14
FAM228B-203ENST00000469867 BAZ1AQ9NRL2 1556 aaPredicted RBP22.17■■□□□ 1.14
FAM228B-203ENST00000469867 HMGXB3Q12766 1538 aa22.12■■□□□ 1.13
FAM228B-203ENST00000469867 BAZ1BQ9UIG0 1483 aaKnown RBP22.07■■□□□ 1.12
FAM228B-203ENST00000469867 MROH2BQ7Z745 1585 aa22.06■■□□□ 1.12
FAM228B-203ENST00000469867 ERCC6Q03468 1493 aa22.05■■□□□ 1.12
FAM228B-203ENST00000469867 PEG3Q9GZU2 1588 aa22■■□□□ 1.11
FAM228B-203ENST00000469867 NESP48681 1621 aa22■■□□□ 1.11
FAM228B-203ENST00000469867 CUX2O14529 1486 aa21.88■■□□□ 1.09
FAM228B-203ENST00000469867 DNAJC5Q9H3Z4 198 aa21.81■■□□□ 1.08
FAM228B-203ENST00000469867 WIZO95785 1651 aa21.8■■□□□ 1.08
FAM228B-203ENST00000469867 LAMC3Q9Y6N6 1575 aa21.76■■□□□ 1.07
FAM228B-203ENST00000469867 PDS5BQ9NTI5 1447 aa21.67■■□□□ 1.06
FAM228B-203ENST00000469867 CADPSQ9ULU8 1353 aa21.66■■□□□ 1.06
FAM228B-203ENST00000469867 THOC2Q8NI27 1593 aaKnown RBP21.66■■□□□ 1.06
FAM228B-203ENST00000469867 KIF21AQ7Z4S6 1674 aa21.66■■□□□ 1.06
FAM228B-203ENST00000469867 RSF1Q96T23 1441 aaPredicted RBP21.65■■□□□ 1.06
FAM228B-203ENST00000469867 TOP2AP11388 1531 aaKnown RBP21.48■■□□□ 1.03
FAM228B-203ENST00000469867 MRC2Q9UBG0 1479 aa21.46■■□□□ 1.03
FAM228B-203ENST00000469867 CFTRP13569 1480 aa21.42■■□□□ 1.02
FAM228B-203ENST00000469867 FANCD2Q9BXW9 1451 aa21.42■■□□□ 1.02
FAM228B-203ENST00000469867 CEP164Q9UPV0 1460 aa21.42■■□□□ 1.02
FAM228B-203ENST00000469867 WDR62O43379 1518 aa21.39■■□□□ 1.01
FAM228B-203ENST00000469867 CCDC88BA6NC98 1476 aa21.29■■□□□ 1
FAM228B-203ENST00000469867 URB2Q14146 1524 aaKnown RBP21.24■□□□□ 0.99
FAM228B-203ENST00000469867 PRDM2Q13029 1718 aa21.14■□□□□ 0.98
FAM228B-203ENST00000469867 TOPBP1Q92547 1522 aa21.02■□□□□ 0.96
FAM228B-203ENST00000469867 TRIM41Q8WV44 630 aa20.99■□□□□ 0.95
FAM228B-203ENST00000469867 ZNF608Q9ULD9 1512 aaPredicted RBP20.99■□□□□ 0.95
FAM228B-203ENST00000469867 OSCARQ8IYS5 282 aa20.99■□□□□ 0.95
FAM228B-203ENST00000469867 IFT140Q96RY7 1462 aa20.96■□□□□ 0.95
FAM228B-203ENST00000469867 ABCC8Q09428 1581 aa20.92■□□□□ 0.94
FAM228B-203ENST00000469867 DNMBPQ6XZF7 1577 aa20.92■□□□□ 0.94
FAM228B-203ENST00000469867 SUPT5HO00267 1087 aaKnown RBP20.9■□□□□ 0.94
FAM228B-203ENST00000469867 EIF4G3O43432 1585 aaKnown RBP20.83■□□□□ 0.93
FAM228B-203ENST00000469867 AQRO60306 1485 aaKnown RBP eCLIP20.83■□□□□ 0.92
FAM228B-203ENST00000469867 POLA1P09884 1462 aaPredicted RBP20.83■□□□□ 0.92
FAM228B-203ENST00000469867 TARBP1Q13395 1621 aaKnown RBP20.8■□□□□ 0.92
FAM228B-203ENST00000469867 RAD54L2Q9Y4B4 1467 aa20.78■□□□□ 0.92
FAM228B-203ENST00000469867 SOGA1O94964 1423 aa20.74■□□□□ 0.91
FAM228B-203ENST00000469867 TDRD9Q8NDG6 1382 aaKnown RBP20.74■□□□□ 0.91
FAM228B-203ENST00000469867 FBLN2P98095 1184 aa20.73■□□□□ 0.91
FAM228B-203ENST00000469867 FGD5Q6ZNL6 1462 aa20.72■□□□□ 0.91
FAM228B-203ENST00000469867 CUX1P39880 1505 aa20.71■□□□□ 0.91
FAM228B-203ENST00000469867 RIMBP3CA6NJZ7 1639 aa20.66■□□□□ 0.9
FAM228B-203ENST00000469867 RIMBP3BA6NNM3 1639 aa20.66■□□□□ 0.9
FAM228B-203ENST00000469867 RIMBP3Q9UFD9 1639 aa20.66■□□□□ 0.9
FAM228B-203ENST00000469867 CHD1O14646 1710 aa20.65■□□□□ 0.9
FAM228B-203ENST00000469867 ARHGEF11O15085 1522 aa20.63■□□□□ 0.89
FAM228B-203ENST00000469867 SNAPC4Q5SXM2 1469 aa20.58■□□□□ 0.88
FAM228B-203ENST00000469867 CYB5RLQ6IPT4 315 aa20.55■□□□□ 0.88
FAM228B-203ENST00000469867 CHMP7Q8WUX9 453 aaPredicted RBP20.54■□□□□ 0.88
FAM228B-203ENST00000469867 GRIN2BQ13224 1484 aa20.52■□□□□ 0.87
FAM228B-203ENST00000469867 WDR97A6NE52 1622 aa20.51■□□□□ 0.87
FAM228B-203ENST00000469867 MAGI1Q96QZ7 1491 aaPredicted RBP20.49■□□□□ 0.87
FAM228B-203ENST00000469867 GAPVD1Q14C86 1478 aa20.48■□□□□ 0.87
FAM228B-203ENST00000469867 ABCA10Q8WWZ4 1543 aa20.45■□□□□ 0.86
FAM228B-203ENST00000469867 SYNJ2O15056 1496 aa20.43■□□□□ 0.86
FAM228B-203ENST00000469867 ARAP1Q96P48 1450 aa20.43■□□□□ 0.86
FAM228B-203ENST00000469867 WRNQ14191 1432 aaPredicted RBP eCLIP20.42■□□□□ 0.86
FAM228B-203ENST00000469867 PBRM1Q86U86 1689 aa20.42■□□□□ 0.86
FAM228B-203ENST00000469867 ABCA5Q8WWZ7 1642 aa20.4■□□□□ 0.86
FAM228B-203ENST00000469867 SYNJ1O43426 1573 aa20.4■□□□□ 0.86
FAM228B-203ENST00000469867 CLASP1Q7Z460 1538 aa20.39■□□□□ 0.85
FAM228B-203ENST00000469867 TOP2BQ02880 1626 aa20.38■□□□□ 0.85
FAM228B-203ENST00000469867 BIVM-ERCC5R4GMW8 1640 aa20.35■□□□□ 0.85
FAM228B-203ENST00000469867 TRHP20396 242 aaPredicted RBP20.29■□□□□ 0.84
FAM228B-203ENST00000469867 GRIN2AQ12879 1464 aa20.27■□□□□ 0.83
FAM228B-203ENST00000469867 ADAMTS12P58397 1594 aa20.24■□□□□ 0.83
FAM228B-203ENST00000469867 FHAD1B1AJZ9 1412 aa20.2■□□□□ 0.82
FAM228B-203ENST00000469867 ERICH3Q5RHP9 1530 aa20.19■□□□□ 0.82
FAM228B-203ENST00000469867 CEP170Q5SW79 1584 aa20.18■□□□□ 0.82
FAM228B-203ENST00000469867 NUP160Q12769 1436 aa20.17■□□□□ 0.82
FAM228B-203ENST00000469867 ERCC6L2Q5T890 1561 aa20.16■□□□□ 0.82
FAM228B-203ENST00000469867 SHROOM2Q13796 1616 aa20.04■□□□□ 0.8
FAM228B-203ENST00000469867 JPH4Q96JJ6 628 aa20.03■□□□□ 0.8
FAM228B-203ENST00000469867 PRG4Q92954 1404 aaPredicted RBP20.02■□□□□ 0.8
FAM228B-203ENST00000469867 KIF27Q86VH2 1401 aa20.01■□□□□ 0.79
FAM228B-203ENST00000469867 IGF1RP08069 1367 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms