RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 NISCHQ9Y2I1 1504 aa40.83■■■■■ 4.13
COL9A3-208ENST00000469802 CCDC180Q9P1Z9 1646 aa36.67■■■■□ 3.46
COL9A3-208ENST00000469802 ABCC9O60706 1549 aa36.18■■■■□ 3.38
COL9A3-208ENST00000469802 RB1CC1Q8TDY2 1594 aa34.66■■■■□ 3.14
COL9A3-208ENST00000469802 NACADO15069 1562 aa34.49■■■■□ 3.11
COL9A3-208ENST00000469802 MYO15BQ96JP2 1530 aa34.17■■■■□ 3.06
COL9A3-208ENST00000469802 DCAF8L2P0C7V8 631 aa34.03■■■■□ 3.04
COL9A3-208ENST00000469802 UNC13AQ9UPW8 1703 aa34.02■■■■□ 3.04
COL9A3-208ENST00000469802 ZCCHC6Q5VYS8 1495 aaKnown RBP33.95■■■■□ 3.02
COL9A3-208ENST00000469802 DCAF1Q9Y4B6 1507 aa33.82■■■■□ 3
COL9A3-208ENST00000469802 BICRAQ9NZM4 1560 aa33.68■■■□□ 2.98
COL9A3-208ENST00000469802 DNAJC5BQ9UF47 199 aa33.63■■■□□ 2.97
COL9A3-208ENST00000469802 PABPN1Q86U42 306 aaKnown RBP eCLIP33.61■■■□□ 2.979e-13■■■□□ 18.7
COL9A3-208ENST00000469802 SCRIBQ14160 1630 aa33.31■■■□□ 2.92
COL9A3-208ENST00000469802 SHROOM4Q9ULL8 1493 aa33.29■■■□□ 2.92
COL9A3-208ENST00000469802 EIF4G1Q04637 1599 aaKnown RBP32.79■■■□□ 2.84
COL9A3-208ENST00000469802 CC2D2AQ9P2K1 1620 aa32.79■■■□□ 2.84
COL9A3-208ENST00000469802 CECR2Q9BXF3 1484 aa32.58■■■□□ 2.81
COL9A3-208ENST00000469802 SMARCA4P51532 1647 aa31.85■■■□□ 2.69
COL9A3-208ENST00000469802 NCAPD3P42695 1498 aa31.79■■■□□ 2.68
COL9A3-208ENST00000469802 ATAD2BQ9ULI0 1458 aa31.73■■■□□ 2.67
COL9A3-208ENST00000469802 SMARCA2P51531 1590 aa31.7■■■□□ 2.67
COL9A3-208ENST00000469802 BAZ1AQ9NRL2 1556 aaPredicted RBP31.69■■■□□ 2.66
COL9A3-208ENST00000469802 HMGXB3Q12766 1538 aa31.67■■■□□ 2.66
COL9A3-208ENST00000469802 PEG3Q9GZU2 1588 aa31.58■■■□□ 2.65
COL9A3-208ENST00000469802 MROH2BQ7Z745 1585 aa31.46■■■□□ 2.63
COL9A3-208ENST00000469802 BAZ1BQ9UIG0 1483 aaKnown RBP31.43■■■□□ 2.62
COL9A3-208ENST00000469802 ERCC6Q03468 1493 aa31.2■■■□□ 2.58
COL9A3-208ENST00000469802 NESP48681 1621 aa31.19■■■□□ 2.58
COL9A3-208ENST00000469802 CUX2O14529 1486 aa31.14■■■□□ 2.57
COL9A3-208ENST00000469802 WIZO95785 1651 aa31.13■■■□□ 2.57
COL9A3-208ENST00000469802 LAMC3Q9Y6N6 1575 aa31.09■■■□□ 2.57
COL9A3-208ENST00000469802 THOC2Q8NI27 1593 aaKnown RBP30.95■■■□□ 2.54
COL9A3-208ENST00000469802 KIF21AQ7Z4S6 1674 aa30.92■■■□□ 2.54
COL9A3-208ENST00000469802 RSF1Q96T23 1441 aaPredicted RBP30.87■■■□□ 2.53
COL9A3-208ENST00000469802 PDS5BQ9NTI5 1447 aa30.79■■■□□ 2.52
COL9A3-208ENST00000469802 CADPSQ9ULU8 1353 aa30.79■■■□□ 2.52
COL9A3-208ENST00000469802 TOP2AP11388 1531 aaKnown RBP30.76■■■□□ 2.51
COL9A3-208ENST00000469802 DNAJC5Q9H3Z4 198 aa30.68■■■□□ 2.5
COL9A3-208ENST00000469802 MRC2Q9UBG0 1479 aa30.57■■■□□ 2.48
COL9A3-208ENST00000469802 CFTRP13569 1480 aa30.56■■■□□ 2.48
COL9A3-208ENST00000469802 WDR62O43379 1518 aa30.55■■■□□ 2.48
COL9A3-208ENST00000469802 CEP164Q9UPV0 1460 aa30.5■■■□□ 2.47
COL9A3-208ENST00000469802 PRDM2Q13029 1718 aa30.47■■■□□ 2.47
COL9A3-208ENST00000469802 FANCD2Q9BXW9 1451 aa30.46■■■□□ 2.47
COL9A3-208ENST00000469802 CCDC88BA6NC98 1476 aa30.33■■■□□ 2.45
COL9A3-208ENST00000469802 URB2Q14146 1524 aaKnown RBP30.24■■■□□ 2.43
COL9A3-208ENST00000469802 TOPBP1Q92547 1522 aa29.96■■■□□ 2.39
COL9A3-208ENST00000469802 DNMBPQ6XZF7 1577 aa29.91■■■□□ 2.38
COL9A3-208ENST00000469802 ABCC8Q09428 1581 aa29.89■■■□□ 2.38
COL9A3-208ENST00000469802 IFT140Q96RY7 1462 aa29.87■■■□□ 2.37
COL9A3-208ENST00000469802 ZNF608Q9ULD9 1512 aaPredicted RBP29.79■■■□□ 2.36
COL9A3-208ENST00000469802 TARBP1Q13395 1621 aaKnown RBP29.74■■■□□ 2.35
COL9A3-208ENST00000469802 EIF4G3O43432 1585 aaKnown RBP29.73■■■□□ 2.35
COL9A3-208ENST00000469802 POLA1P09884 1462 aaPredicted RBP29.67■■■□□ 2.34
COL9A3-208ENST00000469802 OSCARQ8IYS5 282 aa29.6■■■□□ 2.33
COL9A3-208ENST00000469802 CUX1P39880 1505 aa29.55■■■□□ 2.32
COL9A3-208ENST00000469802 FGD5Q6ZNL6 1462 aa29.51■■■□□ 2.31
COL9A3-208ENST00000469802 AQRO60306 1485 aaKnown RBP eCLIP29.5■■■□□ 2.31
COL9A3-208ENST00000469802 SUPT5HO00267 1087 aaKnown RBP29.5■■■□□ 2.31
COL9A3-208ENST00000469802 WDR97A6NE52 1622 aa29.49■■■□□ 2.31
COL9A3-208ENST00000469802 RAD54L2Q9Y4B4 1467 aa29.49■■■□□ 2.31
COL9A3-208ENST00000469802 CHD1O14646 1710 aa29.49■■■□□ 2.31
COL9A3-208ENST00000469802 SOGA1O94964 1423 aa29.45■■■□□ 2.3
COL9A3-208ENST00000469802 RIMBP3CA6NJZ7 1639 aa29.38■■■□□ 2.29
COL9A3-208ENST00000469802 RIMBP3BA6NNM3 1639 aa29.38■■■□□ 2.29
COL9A3-208ENST00000469802 RIMBP3Q9UFD9 1639 aa29.38■■■□□ 2.29
COL9A3-208ENST00000469802 TRIM41Q8WV44 630 aa29.35■■■□□ 2.29
COL9A3-208ENST00000469802 TDRD9Q8NDG6 1382 aaKnown RBP29.33■■■□□ 2.29
COL9A3-208ENST00000469802 ARHGEF11O15085 1522 aa29.28■■■□□ 2.28
COL9A3-208ENST00000469802 PBRM1Q86U86 1689 aa29.26■■■□□ 2.27
COL9A3-208ENST00000469802 SNAPC4Q5SXM2 1469 aa29.26■■■□□ 2.27
COL9A3-208ENST00000469802 BIVM-ERCC5R4GMW8 1640 aa29.24■■■□□ 2.27
COL9A3-208ENST00000469802 MAGI1Q96QZ7 1491 aaPredicted RBP29.23■■■□□ 2.27
COL9A3-208ENST00000469802 ABCA5Q8WWZ7 1642 aa29.23■■■□□ 2.27
COL9A3-208ENST00000469802 ABCA10Q8WWZ4 1543 aa29.22■■■□□ 2.27
COL9A3-208ENST00000469802 GRIN2BQ13224 1484 aa29.22■■■□□ 2.27
COL9A3-208ENST00000469802 TOP2BQ02880 1626 aa29.19■■■□□ 2.26
COL9A3-208ENST00000469802 SYNJ1O43426 1573 aa29.16■■■□□ 2.26
COL9A3-208ENST00000469802 GAPVD1Q14C86 1478 aa29.14■■■□□ 2.26
COL9A3-208ENST00000469802 CLASP1Q7Z460 1538 aa29.13■■■□□ 2.25
COL9A3-208ENST00000469802 SYNJ2O15056 1496 aa29.11■■■□□ 2.25
COL9A3-208ENST00000469802 FBLN2P98095 1184 aa29.11■■■□□ 2.25
COL9A3-208ENST00000469802 WRNQ14191 1432 aaPredicted RBP eCLIP29.11■■■□□ 2.25
COL9A3-208ENST00000469802 ARAP1Q96P48 1450 aa29.01■■■□□ 2.23
COL9A3-208ENST00000469802 CHMP7Q8WUX9 453 aaPredicted RBP28.99■■■□□ 2.23
COL9A3-208ENST00000469802 ADAMTS12P58397 1594 aa28.96■■■□□ 2.23
COL9A3-208ENST00000469802 GRIN2AQ12879 1464 aa28.87■■■□□ 2.21
COL9A3-208ENST00000469802 ERICH3Q5RHP9 1530 aa28.87■■■□□ 2.21
COL9A3-208ENST00000469802 CYB5RLQ6IPT4 315 aa28.85■■■□□ 2.21
COL9A3-208ENST00000469802 CEP170Q5SW79 1584 aa28.79■■■□□ 2.2
COL9A3-208ENST00000469802 FHAD1B1AJZ9 1412 aa28.78■■■□□ 2.2
COL9A3-208ENST00000469802 NUP160Q12769 1436 aa28.77■■■□□ 2.2
COL9A3-208ENST00000469802 SHROOM2Q13796 1616 aa28.71■■■□□ 2.19
COL9A3-208ENST00000469802 ERCC6L2Q5T890 1561 aa28.65■■■□□ 2.18
COL9A3-208ENST00000469802 RUSC2Q8N2Y8 1516 aa28.57■■■□□ 2.16
COL9A3-208ENST00000469802 CUL7Q14999 1698 aa28.55■■■□□ 2.16
COL9A3-208ENST00000469802 KIF27Q86VH2 1401 aa28.52■■■□□ 2.16
COL9A3-208ENST00000469802 IGF1RP08069 1367 aa28.45■■■□□ 2.14
COL9A3-208ENST00000469802 TRHP20396 242 aaPredicted RBP28.4■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms