RNA–Protein interactions for RNA: ENST00000469769.1

THBS3-206, Transcript of thrombospondin 3, humanhuman

TSL 2

Gene THBS3, Length 777 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-206ENST00000469769 NISCHQ9Y2I1 1504 aa24.51■■□□□ 1.51
THBS3-206ENST00000469769 CCDC180Q9P1Z9 1646 aa21.57■■□□□ 1.04
THBS3-206ENST00000469769 ABCC9O60706 1549 aa20.55■□□□□ 0.88
THBS3-206ENST00000469769 ZCCHC6Q5VYS8 1495 aaKnown RBP20.52■□□□□ 0.88
THBS3-206ENST00000469769 DCAF1Q9Y4B6 1507 aa20.37■□□□□ 0.85
THBS3-206ENST00000469769 MYO15BQ96JP2 1530 aa20.29■□□□□ 0.84
THBS3-206ENST00000469769 NACADO15069 1562 aa20.17■□□□□ 0.82
THBS3-206ENST00000469769 DCAF8L2P0C7V8 631 aa20.09■□□□□ 0.81
THBS3-206ENST00000469769 RB1CC1Q8TDY2 1594 aa20.03■□□□□ 0.8
THBS3-206ENST00000469769 SCRIBQ14160 1630 aa19.62■□□□□ 0.73
THBS3-206ENST00000469769 UNC13AQ9UPW8 1703 aa19.61■□□□□ 0.73
THBS3-206ENST00000469769 DNAJC5BQ9UF47 199 aa19.6■□□□□ 0.73
THBS3-206ENST00000469769 SHROOM4Q9ULL8 1493 aa19.49■□□□□ 0.71
THBS3-206ENST00000469769 BICRAQ9NZM4 1560 aa19.46■□□□□ 0.71
THBS3-206ENST00000469769 PABPN1Q86U42 306 aaKnown RBP eCLIP19.27■□□□□ 0.68
THBS3-206ENST00000469769 CECR2Q9BXF3 1484 aa19.01■□□□□ 0.63
THBS3-206ENST00000469769 DNAJC5Q9H3Z4 198 aa18.94■□□□□ 0.62
THBS3-206ENST00000469769 BAZ1AQ9NRL2 1556 aaPredicted RBP18.93■□□□□ 0.62
THBS3-206ENST00000469769 SMARCA4P51532 1647 aa18.89■□□□□ 0.61
THBS3-206ENST00000469769 EIF4G1Q04637 1599 aaKnown RBP18.87■□□□□ 0.61
THBS3-206ENST00000469769 MROH2BQ7Z745 1585 aa18.87■□□□□ 0.61
THBS3-206ENST00000469769 RSF1Q96T23 1441 aaPredicted RBP18.85■□□□□ 0.61
THBS3-206ENST00000469769 PEG3Q9GZU2 1588 aa18.77■□□□□ 0.6
THBS3-206ENST00000469769 ATAD2BQ9ULI0 1458 aa18.68■□□□□ 0.58
THBS3-206ENST00000469769 SMARCA2P51531 1590 aa18.67■□□□□ 0.58
THBS3-206ENST00000469769 WIZO95785 1651 aa18.66■□□□□ 0.58
THBS3-206ENST00000469769 CC2D2AQ9P2K1 1620 aa18.66■□□□□ 0.58
THBS3-206ENST00000469769 NCAPD3P42695 1498 aa18.64■□□□□ 0.57
THBS3-206ENST00000469769 SUPT5HO00267 1087 aaKnown RBP18.59■□□□□ 0.57
THBS3-206ENST00000469769 HMGXB3Q12766 1538 aa18.56■□□□□ 0.56
THBS3-206ENST00000469769 TOP2AP11388 1531 aaKnown RBP18.52■□□□□ 0.56
THBS3-206ENST00000469769 BAZ1BQ9UIG0 1483 aaKnown RBP18.5■□□□□ 0.55
THBS3-206ENST00000469769 CCDC88BA6NC98 1476 aa18.3■□□□□ 0.52
THBS3-206ENST00000469769 CFTRP13569 1480 aa18.1■□□□□ 0.49
THBS3-206ENST00000469769 CADPSQ9ULU8 1353 aa18.08■□□□□ 0.49
THBS3-206ENST00000469769 LAMC3Q9Y6N6 1575 aa18.03■□□□□ 0.48
THBS3-206ENST00000469769 PRDM2Q13029 1718 aa17.97■□□□□ 0.47
THBS3-206ENST00000469769 NESP48681 1621 aa17.94■□□□□ 0.46
THBS3-206ENST00000469769 PDS5BQ9NTI5 1447 aa17.87■□□□□ 0.45
THBS3-206ENST00000469769 FANCD2Q9BXW9 1451 aa17.83■□□□□ 0.45
THBS3-206ENST00000469769 CEP164Q9UPV0 1460 aa17.75■□□□□ 0.43
THBS3-206ENST00000469769 KIF21AQ7Z4S6 1674 aa17.75■□□□□ 0.43
THBS3-206ENST00000469769 CHIC1Q5VXU3 224 aa17.74■□□□□ 0.43
THBS3-206ENST00000469769 WRNQ14191 1432 aaPredicted RBP eCLIP17.72■□□□□ 0.43
THBS3-206ENST00000469769 ABCC8Q09428 1581 aa17.72■□□□□ 0.43
THBS3-206ENST00000469769 CUX1P39880 1505 aa17.67■□□□□ 0.42
THBS3-206ENST00000469769 TOP2BQ02880 1626 aa17.65■□□□□ 0.42
THBS3-206ENST00000469769 BIVM-ERCC5R4GMW8 1640 aa17.65■□□□□ 0.42
THBS3-206ENST00000469769 SYNJ1O43426 1573 aa17.65■□□□□ 0.42
THBS3-206ENST00000469769 ERCC6Q03468 1493 aa17.64■□□□□ 0.41
THBS3-206ENST00000469769 MRC2Q9UBG0 1479 aa17.64■□□□□ 0.41
THBS3-206ENST00000469769 URB2Q14146 1524 aaKnown RBP17.64■□□□□ 0.41
THBS3-206ENST00000469769 DNMBPQ6XZF7 1577 aa17.64■□□□□ 0.41
THBS3-206ENST00000469769 TOPBP1Q92547 1522 aa17.62■□□□□ 0.41
THBS3-206ENST00000469769 THOC2Q8NI27 1593 aaKnown RBP17.61■□□□□ 0.41
THBS3-206ENST00000469769 WDR62O43379 1518 aa17.6■□□□□ 0.41
THBS3-206ENST00000469769 TRIM41Q8WV44 630 aa17.58■□□□□ 0.4
THBS3-206ENST00000469769 FGD5Q6ZNL6 1462 aa17.51■□□□□ 0.39
THBS3-206ENST00000469769 POLA1P09884 1462 aaPredicted RBP17.5■□□□□ 0.39
THBS3-206ENST00000469769 CUX2O14529 1486 aa17.45■□□□□ 0.38
THBS3-206ENST00000469769 SOGA1O94964 1423 aa17.43■□□□□ 0.38
THBS3-206ENST00000469769 TARBP1Q13395 1621 aaKnown RBP17.42■□□□□ 0.38
THBS3-206ENST00000469769 ABCA10Q8WWZ4 1543 aa17.42■□□□□ 0.38
THBS3-206ENST00000469769 IFT140Q96RY7 1462 aa17.39■□□□□ 0.37
THBS3-206ENST00000469769 RAD54L2Q9Y4B4 1467 aa17.39■□□□□ 0.37
THBS3-206ENST00000469769 WDR97A6NE52 1622 aa17.38■□□□□ 0.37
THBS3-206ENST00000469769 EEA1Q15075 1411 aa17.34■□□□□ 0.37
THBS3-206ENST00000469769 KIF27Q86VH2 1401 aa17.31■□□□□ 0.36
THBS3-206ENST00000469769 RUSC2Q8N2Y8 1516 aa17.3■□□□□ 0.36
THBS3-206ENST00000469769 ABCA5Q8WWZ7 1642 aa17.29■□□□□ 0.36
THBS3-206ENST00000469769 ZNF608Q9ULD9 1512 aaPredicted RBP17.26■□□□□ 0.35
THBS3-206ENST00000469769 TDRD9Q8NDG6 1382 aaKnown RBP17.25■□□□□ 0.35
THBS3-206ENST00000469769 GAPVD1Q14C86 1478 aa17.24■□□□□ 0.35
THBS3-206ENST00000469769 IGF1RP08069 1367 aa17.23■□□□□ 0.35
THBS3-206ENST00000469769 CSRNP3Q8WYN3 585 aa17.21■□□□□ 0.35
THBS3-206ENST00000469769 ERICH3Q5RHP9 1530 aa17.21■□□□□ 0.34
THBS3-206ENST00000469769 AQRO60306 1485 aaKnown RBP eCLIP17.2■□□□□ 0.34
THBS3-206ENST00000469769 EIF4G3O43432 1585 aaKnown RBP17.19■□□□□ 0.34
THBS3-206ENST00000469769 GRIN2BQ13224 1484 aa17.18■□□□□ 0.34
THBS3-206ENST00000469769 PRXQ9BXM0 1461 aa17.16■□□□□ 0.34
THBS3-206ENST00000469769 PBRM1Q86U86 1689 aa17.15■□□□□ 0.34
THBS3-206ENST00000469769 FAM9AQ8IZU1 332 aaPredicted RBP17.13■□□□□ 0.33
THBS3-206ENST00000469769 CUL7Q14999 1698 aa17.12■□□□□ 0.33
THBS3-206ENST00000469769 KIF21BO75037 1637 aa17.1■□□□□ 0.33
THBS3-206ENST00000469769 CARMIL1Q5VZK9 1371 aa17.1■□□□□ 0.33
THBS3-206ENST00000469769 MAGI1Q96QZ7 1491 aaPredicted RBP17.1■□□□□ 0.33
THBS3-206ENST00000469769 FHAD1B1AJZ9 1412 aa17.07■□□□□ 0.32
THBS3-206ENST00000469769 ADAMTS12P58397 1594 aa17.06■□□□□ 0.32
THBS3-206ENST00000469769 SNAPC4Q5SXM2 1469 aa17.05■□□□□ 0.32
THBS3-206ENST00000469769 RAPGEF2Q9Y4G8 1499 aa17.05■□□□□ 0.32
THBS3-206ENST00000469769 SYNJ2O15056 1496 aa17.01■□□□□ 0.31
THBS3-206ENST00000469769 GOLGA3Q08378 1498 aa17.01■□□□□ 0.31
THBS3-206ENST00000469769 LOC105371045A0A1W2PR82 267 aa16.96■□□□□ 0.31
THBS3-206ENST00000469769 GRIN2AQ12879 1464 aa16.95■□□□□ 0.3
THBS3-206ENST00000469769 TNIKQ9UKE5 1360 aa16.93■□□□□ 0.3
THBS3-206ENST00000469769 NUP160Q12769 1436 aa16.9■□□□□ 0.3
THBS3-206ENST00000469769 CHMP7Q8WUX9 453 aaPredicted RBP16.9■□□□□ 0.3
THBS3-206ENST00000469769 CHD1O14646 1710 aa16.87■□□□□ 0.29
THBS3-206ENST00000469769 UBTFP17480 764 aaKnown RBP16.85■□□□□ 0.29
THBS3-206ENST00000469769 CEP170Q5SW79 1584 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms