RNA–Protein interactions for RNA: ENST00000469744.1

MRPL28-208, Transcript of mitochondrial ribosomal protein L28, humanhuman

TSL 1 (best)

Gene MRPL28, Length 1,467 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL28-208ENST00000469744 NISCHQ9Y2I1 1504 aa43.04■■■■■ 4.48
MRPL28-208ENST00000469744 CCDC180Q9P1Z9 1646 aa38.41■■■■□ 3.74
MRPL28-208ENST00000469744 ABCC9O60706 1549 aa38.04■■■■□ 3.68
MRPL28-208ENST00000469744 RB1CC1Q8TDY2 1594 aa36.35■■■■□ 3.41
MRPL28-208ENST00000469744 NACADO15069 1562 aa36.18■■■■□ 3.38
MRPL28-208ENST00000469744 DCAF8L2P0C7V8 631 aa36.18■■■■□ 3.38
MRPL28-208ENST00000469744 MYO15BQ96JP2 1530 aa35.78■■■■□ 3.32
MRPL28-208ENST00000469744 ZCCHC6Q5VYS8 1495 aaKnown RBP35.78■■■■□ 3.32
MRPL28-208ENST00000469744 UNC13AQ9UPW8 1703 aa35.63■■■■□ 3.29
MRPL28-208ENST00000469744 DCAF1Q9Y4B6 1507 aa35.52■■■■□ 3.28
MRPL28-208ENST00000469744 PABPN1Q86U42 306 aaKnown RBP eCLIP35.48■■■■□ 3.275e-7■■■■■ 28.2
MRPL28-208ENST00000469744 BICRAQ9NZM4 1560 aa35.31■■■■□ 3.24
MRPL28-208ENST00000469744 DNAJC5BQ9UF47 199 aa35.24■■■■□ 3.23
MRPL28-208ENST00000469744 SCRIBQ14160 1630 aa35.13■■■■□ 3.21
MRPL28-208ENST00000469744 SHROOM4Q9ULL8 1493 aa34.76■■■■□ 3.15
MRPL28-208ENST00000469744 EIF4G1Q04637 1599 aaKnown RBP34.39■■■■□ 3.1
MRPL28-208ENST00000469744 CC2D2AQ9P2K1 1620 aa34.37■■■■□ 3.09
MRPL28-208ENST00000469744 CECR2Q9BXF3 1484 aa34.17■■■■□ 3.06
MRPL28-208ENST00000469744 SMARCA4P51532 1647 aa33.5■■■□□ 2.95
MRPL28-208ENST00000469744 ATAD2BQ9ULI0 1458 aa33.39■■■□□ 2.94
MRPL28-208ENST00000469744 NCAPD3P42695 1498 aa33.38■■■□□ 2.93
MRPL28-208ENST00000469744 BAZ1AQ9NRL2 1556 aaPredicted RBP33.37■■■□□ 2.93
MRPL28-208ENST00000469744 SMARCA2P51531 1590 aa33.31■■■□□ 2.92
MRPL28-208ENST00000469744 MROH2BQ7Z745 1585 aa33.21■■■□□ 2.91
MRPL28-208ENST00000469744 HMGXB3Q12766 1538 aa33.21■■■□□ 2.91
MRPL28-208ENST00000469744 PEG3Q9GZU2 1588 aa33.12■■■□□ 2.89
MRPL28-208ENST00000469744 BAZ1BQ9UIG0 1483 aaKnown RBP33.11■■■□□ 2.89
MRPL28-208ENST00000469744 WIZO95785 1651 aa32.87■■■□□ 2.85
MRPL28-208ENST00000469744 NESP48681 1621 aa32.82■■■□□ 2.84
MRPL28-208ENST00000469744 ERCC6Q03468 1493 aa32.78■■■□□ 2.84
MRPL28-208ENST00000469744 RSF1Q96T23 1441 aaPredicted RBP32.66■■■□□ 2.82
MRPL28-208ENST00000469744 LAMC3Q9Y6N6 1575 aa32.59■■■□□ 2.81
MRPL28-208ENST00000469744 CUX2O14529 1486 aa32.5■■■□□ 2.79
MRPL28-208ENST00000469744 KIF21AQ7Z4S6 1674 aa32.43■■■□□ 2.78
MRPL28-208ENST00000469744 TOP2AP11388 1531 aaKnown RBP32.43■■■□□ 2.78
MRPL28-208ENST00000469744 CADPSQ9ULU8 1353 aa32.41■■■□□ 2.78
MRPL28-208ENST00000469744 THOC2Q8NI27 1593 aaKnown RBP32.37■■■□□ 2.77
MRPL28-208ENST00000469744 PDS5BQ9NTI5 1447 aa32.36■■■□□ 2.77
MRPL28-208ENST00000469744 CFTRP13569 1480 aa32.14■■■□□ 2.74
MRPL28-208ENST00000469744 MRC2Q9UBG0 1479 aa32.09■■■□□ 2.73
MRPL28-208ENST00000469744 FANCD2Q9BXW9 1451 aa32.08■■■□□ 2.73
MRPL28-208ENST00000469744 CEP164Q9UPV0 1460 aa32.07■■■□□ 2.72
MRPL28-208ENST00000469744 CCDC88BA6NC98 1476 aa32.06■■■□□ 2.72
MRPL28-208ENST00000469744 WDR62O43379 1518 aa32■■■□□ 2.71
MRPL28-208ENST00000469744 DNAJC5Q9H3Z4 198 aa31.95■■■□□ 2.7
MRPL28-208ENST00000469744 PRDM2Q13029 1718 aa31.93■■■□□ 2.7
MRPL28-208ENST00000469744 URB2Q14146 1524 aaKnown RBP31.81■■■□□ 2.68
MRPL28-208ENST00000469744 SUPT5HO00267 1087 aaKnown RBP31.63■■■□□ 2.65
MRPL28-208ENST00000469744 TOPBP1Q92547 1522 aa31.53■■■□□ 2.64
MRPL28-208ENST00000469744 DNMBPQ6XZF7 1577 aa31.45■■■□□ 2.62
MRPL28-208ENST00000469744 ABCC8Q09428 1581 aa31.41■■■□□ 2.62
MRPL28-208ENST00000469744 IFT140Q96RY7 1462 aa31.38■■■□□ 2.61
MRPL28-208ENST00000469744 ZNF608Q9ULD9 1512 aaPredicted RBP31.35■■■□□ 2.61
MRPL28-208ENST00000469744 POLA1P09884 1462 aaPredicted RBP31.23■■■□□ 2.59
MRPL28-208ENST00000469744 TARBP1Q13395 1621 aaKnown RBP31.23■■■□□ 2.59
MRPL28-208ENST00000469744 EIF4G3O43432 1585 aaKnown RBP31.21■■■□□ 2.59
MRPL28-208ENST00000469744 CUX1P39880 1505 aa31.18■■■□□ 2.58
MRPL28-208ENST00000469744 RAD54L2Q9Y4B4 1467 aa31.14■■■□□ 2.58
MRPL28-208ENST00000469744 FGD5Q6ZNL6 1462 aa31.12■■■□□ 2.57
MRPL28-208ENST00000469744 AQRO60306 1485 aaKnown RBP eCLIP31.11■■■□□ 2.574e-7■■■■■ 27.1
MRPL28-208ENST00000469744 OSCARQ8IYS5 282 aa31.09■■■□□ 2.57
MRPL28-208ENST00000469744 SOGA1O94964 1423 aa31.08■■■□□ 2.57
MRPL28-208ENST00000469744 TDRD9Q8NDG6 1382 aaKnown RBP31■■■□□ 2.55
MRPL28-208ENST00000469744 CHD1O14646 1710 aa30.92■■■□□ 2.54
MRPL28-208ENST00000469744 WDR97A6NE52 1622 aa30.89■■■□□ 2.54
MRPL28-208ENST00000469744 TRIM41Q8WV44 630 aa30.84■■■□□ 2.53
MRPL28-208ENST00000469744 FBLN2P98095 1184 aa30.82■■■□□ 2.53
MRPL28-208ENST00000469744 SNAPC4Q5SXM2 1469 aa30.81■■■□□ 2.52
MRPL28-208ENST00000469744 WRNQ14191 1432 aaPredicted RBP eCLIP30.81■■■□□ 2.52
MRPL28-208ENST00000469744 SYNJ1O43426 1573 aa30.8■■■□□ 2.52
MRPL28-208ENST00000469744 BIVM-ERCC5R4GMW8 1640 aa30.79■■■□□ 2.52
MRPL28-208ENST00000469744 TOP2BQ02880 1626 aa30.78■■■□□ 2.52
MRPL28-208ENST00000469744 ABCA10Q8WWZ4 1543 aa30.76■■■□□ 2.51
MRPL28-208ENST00000469744 GRIN2BQ13224 1484 aa30.75■■■□□ 2.51
MRPL28-208ENST00000469744 PBRM1Q86U86 1689 aa30.75■■■□□ 2.51
MRPL28-208ENST00000469744 GAPVD1Q14C86 1478 aa30.72■■■□□ 2.51
MRPL28-208ENST00000469744 RIMBP3CA6NJZ7 1639 aa30.72■■■□□ 2.51
MRPL28-208ENST00000469744 RIMBP3BA6NNM3 1639 aa30.72■■■□□ 2.51
MRPL28-208ENST00000469744 RIMBP3Q9UFD9 1639 aa30.72■■■□□ 2.51
MRPL28-208ENST00000469744 ABCA5Q8WWZ7 1642 aa30.71■■■□□ 2.51
MRPL28-208ENST00000469744 MAGI1Q96QZ7 1491 aaPredicted RBP30.69■■■□□ 2.5
MRPL28-208ENST00000469744 ARHGEF11O15085 1522 aa30.66■■■□□ 2.5
MRPL28-208ENST00000469744 CHMP7Q8WUX9 453 aaPredicted RBP30.62■■■□□ 2.49
MRPL28-208ENST00000469744 SYNJ2O15056 1496 aa30.6■■■□□ 2.49
MRPL28-208ENST00000469744 CLASP1Q7Z460 1538 aa30.51■■■□□ 2.48
MRPL28-208ENST00000469744 ADAMTS12P58397 1594 aa30.45■■■□□ 2.47
MRPL28-208ENST00000469744 CYB5RLQ6IPT4 315 aa30.39■■■□□ 2.46
MRPL28-208ENST00000469744 ARAP1Q96P48 1450 aa30.39■■■□□ 2.46
MRPL28-208ENST00000469744 GRIN2AQ12879 1464 aa30.38■■■□□ 2.45
MRPL28-208ENST00000469744 ERICH3Q5RHP9 1530 aa30.38■■■□□ 2.45
MRPL28-208ENST00000469744 FHAD1B1AJZ9 1412 aa30.33■■■□□ 2.45
MRPL28-208ENST00000469744 CEP170Q5SW79 1584 aa30.29■■■□□ 2.44
MRPL28-208ENST00000469744 NUP160Q12769 1436 aa30.23■■■□□ 2.43
MRPL28-208ENST00000469744 KIF27Q86VH2 1401 aa30.16■■■□□ 2.42
MRPL28-208ENST00000469744 ERCC6L2Q5T890 1561 aa30.13■■■□□ 2.41
MRPL28-208ENST00000469744 IGF1RP08069 1367 aa30.1■■■□□ 2.41
MRPL28-208ENST00000469744 SHROOM2Q13796 1616 aa30.07■■■□□ 2.4
MRPL28-208ENST00000469744 CUL7Q14999 1698 aa30.05■■■□□ 2.4
MRPL28-208ENST00000469744 RUSC2Q8N2Y8 1516 aa30.01■■■□□ 2.4
MRPL28-208ENST00000469744 PRG4Q92954 1404 aaPredicted RBP29.93■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms