RNA–Protein interactions for RNA: ENST00000469670.1

TTC28-205, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-205ENST00000469670 NISCHQ9Y2I1 1504 aa46.49■■■■■ 5.03
TTC28-205ENST00000469670 ABCC9O60706 1549 aa42.48■■■■■ 4.39
TTC28-205ENST00000469670 CCDC180Q9P1Z9 1646 aa41.87■■■■■ 4.29
TTC28-205ENST00000469670 DNAJC5BQ9UF47 199 aa40.35■■■■■ 4.05
TTC28-205ENST00000469670 RB1CC1Q8TDY2 1594 aa40.17■■■■■ 4.02
TTC28-205ENST00000469670 NACADO15069 1562 aa39.76■■■■□ 3.96
TTC28-205ENST00000469670 DCAF8L2P0C7V8 631 aa39.53■■■■□ 3.92
TTC28-205ENST00000469670 PABPN1Q86U42 306 aaKnown RBP eCLIP39.5■■■■□ 3.91
TTC28-205ENST00000469670 UNC13AQ9UPW8 1703 aa39.15■■■■□ 3.86
TTC28-205ENST00000469670 MYO15BQ96JP2 1530 aa39.05■■■■□ 3.84
TTC28-205ENST00000469670 BICRAQ9NZM4 1560 aa39.01■■■■□ 3.84
TTC28-205ENST00000469670 SHROOM4Q9ULL8 1493 aa38.45■■■■□ 3.75
TTC28-205ENST00000469670 ZCCHC6Q5VYS8 1495 aaKnown RBP38.41■■■■□ 3.74
TTC28-205ENST00000469670 DCAF1Q9Y4B6 1507 aa38.35■■■■□ 3.73
TTC28-205ENST00000469670 CECR2Q9BXF3 1484 aa38.33■■■■□ 3.73
TTC28-205ENST00000469670 CC2D2AQ9P2K1 1620 aa38.31■■■■□ 3.72
TTC28-205ENST00000469670 SCRIBQ14160 1630 aa38.16■■■■□ 3.7
TTC28-205ENST00000469670 EIF4G1Q04637 1599 aaKnown RBP38.1■■■■□ 3.69
TTC28-205ENST00000469670 DNAJC5Q9H3Z4 198 aa37.44■■■■□ 3.58
TTC28-205ENST00000469670 CUX2O14529 1486 aa36.82■■■■□ 3.49
TTC28-205ENST00000469670 NCAPD3P42695 1498 aa36.75■■■■□ 3.47
TTC28-205ENST00000469670 ERCC6Q03468 1493 aa36.72■■■■□ 3.47
TTC28-205ENST00000469670 ATAD2BQ9ULI0 1458 aa36.56■■■■□ 3.44
TTC28-205ENST00000469670 SMARCA2P51531 1590 aa36.4■■■■□ 3.42
TTC28-205ENST00000469670 HMGXB3Q12766 1538 aa36.39■■■■□ 3.42
TTC28-205ENST00000469670 SMARCA4P51532 1647 aa36.34■■■■□ 3.41
TTC28-205ENST00000469670 NESP48681 1621 aa36.34■■■■□ 3.41
TTC28-205ENST00000469670 BAZ1BQ9UIG0 1483 aaKnown RBP36.17■■■■□ 3.38
TTC28-205ENST00000469670 BAZ1AQ9NRL2 1556 aaPredicted RBP36.1■■■■□ 3.37
TTC28-205ENST00000469670 THOC2Q8NI27 1593 aaKnown RBP36.03■■■■□ 3.36
TTC28-205ENST00000469670 PEG3Q9GZU2 1588 aa36■■■■□ 3.35
TTC28-205ENST00000469670 LAMC3Q9Y6N6 1575 aa35.97■■■■□ 3.35
TTC28-205ENST00000469670 PDS5BQ9NTI5 1447 aa35.83■■■■□ 3.33
TTC28-205ENST00000469670 MROH2BQ7Z745 1585 aa35.82■■■■□ 3.32
TTC28-205ENST00000469670 KIF21AQ7Z4S6 1674 aa35.77■■■■□ 3.32
TTC28-205ENST00000469670 CADPSQ9ULU8 1353 aa35.63■■■■□ 3.29
TTC28-205ENST00000469670 TRIM41Q8WV44 630 aa35.6■■■■□ 3.29
TTC28-205ENST00000469670 MRC2Q9UBG0 1479 aa35.54■■■■□ 3.28
TTC28-205ENST00000469670 WDR62O43379 1518 aa35.45■■■■□ 3.27
TTC28-205ENST00000469670 WIZO95785 1651 aa35.32■■■■□ 3.24
TTC28-205ENST00000469670 CEP164Q9UPV0 1460 aa35.29■■■■□ 3.24
TTC28-205ENST00000469670 FANCD2Q9BXW9 1451 aa35.21■■■■□ 3.23
TTC28-205ENST00000469670 CFTRP13569 1480 aa35.09■■■■□ 3.21
TTC28-205ENST00000469670 OSCARQ8IYS5 282 aa35.09■■■■□ 3.21
TTC28-205ENST00000469670 URB2Q14146 1524 aaKnown RBP34.94■■■■□ 3.18
TTC28-205ENST00000469670 RSF1Q96T23 1441 aaPredicted RBP34.9■■■■□ 3.18
TTC28-205ENST00000469670 TOP2AP11388 1531 aaKnown RBP34.86■■■■□ 3.17
TTC28-205ENST00000469670 RIMBP3CA6NJZ7 1639 aa34.63■■■■□ 3.13
TTC28-205ENST00000469670 RIMBP3BA6NNM3 1639 aa34.63■■■■□ 3.13
TTC28-205ENST00000469670 RIMBP3Q9UFD9 1639 aa34.63■■■■□ 3.13
TTC28-205ENST00000469670 ZNF608Q9ULD9 1512 aaPredicted RBP34.61■■■■□ 3.13
TTC28-205ENST00000469670 IFT140Q96RY7 1462 aa34.61■■■■□ 3.13
TTC28-205ENST00000469670 PRDM2Q13029 1718 aa34.55■■■■□ 3.12
TTC28-205ENST00000469670 CCDC88BA6NC98 1476 aa34.5■■■■□ 3.11
TTC28-205ENST00000469670 ARHGEF11O15085 1522 aa34.5■■■■□ 3.11
TTC28-205ENST00000469670 TOPBP1Q92547 1522 aa34.47■■■■□ 3.11
TTC28-205ENST00000469670 ABCC8Q09428 1581 aa34.36■■■■□ 3.09
TTC28-205ENST00000469670 EIF4G3O43432 1585 aaKnown RBP34.35■■■■□ 3.09
TTC28-205ENST00000469670 CYB5RLQ6IPT4 315 aa34.32■■■■□ 3.08
TTC28-205ENST00000469670 DNMBPQ6XZF7 1577 aa34.28■■■■□ 3.08
TTC28-205ENST00000469670 AQRO60306 1485 aaKnown RBP eCLIP34.24■■■■□ 3.07
TTC28-205ENST00000469670 TARBP1Q13395 1621 aaKnown RBP34.17■■■■□ 3.06
TTC28-205ENST00000469670 FBLN2P98095 1184 aa34.15■■■■□ 3.06
TTC28-205ENST00000469670 CHD1O14646 1710 aa34.14■■■■□ 3.06
TTC28-205ENST00000469670 ARAP1Q96P48 1450 aa34.13■■■■□ 3.05
TTC28-205ENST00000469670 TRHP20396 242 aaPredicted RBP34.11■■■■□ 3.05
TTC28-205ENST00000469670 POLA1P09884 1462 aaPredicted RBP34.09■■■■□ 3.05
TTC28-205ENST00000469670 RAD54L2Q9Y4B4 1467 aa33.99■■■■□ 3.03
TTC28-205ENST00000469670 TDRD9Q8NDG6 1382 aaKnown RBP33.96■■■■□ 3.03
TTC28-205ENST00000469670 SOGA1O94964 1423 aa33.95■■■■□ 3.02
TTC28-205ENST00000469670 SNAPC4Q5SXM2 1469 aa33.87■■■■□ 3.01
TTC28-205ENST00000469670 CLASP1Q7Z460 1538 aa33.8■■■■□ 3
TTC28-205ENST00000469670 CHMP7Q8WUX9 453 aaPredicted RBP33.8■■■■□ 3
TTC28-205ENST00000469670 FGD5Q6ZNL6 1462 aa33.8■■■■□ 3
TTC28-205ENST00000469670 WDR97A6NE52 1622 aa33.79■■■■□ 3
TTC28-205ENST00000469670 MAGI1Q96QZ7 1491 aaPredicted RBP33.74■■■□□ 2.99
TTC28-205ENST00000469670 SYNJ1O43426 1573 aa33.73■■■□□ 2.99
TTC28-205ENST00000469670 GRIN2BQ13224 1484 aa33.7■■■□□ 2.99
TTC28-205ENST00000469670 CUX1P39880 1505 aa33.68■■■□□ 2.98
TTC28-205ENST00000469670 SYNJ2O15056 1496 aa33.64■■■□□ 2.98
TTC28-205ENST00000469670 AEBP2Q6ZN18 517 aaPredicted RBP33.51■■■□□ 2.95
TTC28-205ENST00000469670 GAPVD1Q14C86 1478 aa33.5■■■□□ 2.95
TTC28-205ENST00000469670 PBRM1Q86U86 1689 aa33.44■■■□□ 2.94
TTC28-205ENST00000469670 ABCA10Q8WWZ4 1543 aa33.38■■■□□ 2.93
TTC28-205ENST00000469670 ABCA5Q8WWZ7 1642 aa33.35■■■□□ 2.93
TTC28-205ENST00000469670 GRIN2AQ12879 1464 aa33.25■■■□□ 2.91
TTC28-205ENST00000469670 ERCC6L2Q5T890 1561 aa33.25■■■□□ 2.91
TTC28-205ENST00000469670 NUP160Q12769 1436 aa33.18■■■□□ 2.9
TTC28-205ENST00000469670 WRNQ14191 1432 aaPredicted RBP eCLIP33.16■■■□□ 2.9
TTC28-205ENST00000469670 ADAMTS12P58397 1594 aa33.15■■■□□ 2.9
TTC28-205ENST00000469670 CEP170Q5SW79 1584 aa33.15■■■□□ 2.9
TTC28-205ENST00000469670 FHAD1B1AJZ9 1412 aa33.07■■■□□ 2.88
TTC28-205ENST00000469670 SHROOM2Q13796 1616 aa33.03■■■□□ 2.88
TTC28-205ENST00000469670 SUPT5HO00267 1087 aaKnown RBP32.99■■■□□ 2.87
TTC28-205ENST00000469670 TOP2BQ02880 1626 aa32.97■■■□□ 2.87
TTC28-205ENST00000469670 BIVM-ERCC5R4GMW8 1640 aa32.95■■■□□ 2.87
TTC28-205ENST00000469670 ERICH3Q5RHP9 1530 aa32.94■■■□□ 2.86
TTC28-205ENST00000469670 PRG4Q92954 1404 aaPredicted RBP32.91■■■□□ 2.86
TTC28-205ENST00000469670 JPH4Q96JJ6 628 aa32.86■■■□□ 2.85
TTC28-205ENST00000469670 KIF13AQ9H1H9 1805 aa32.84■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms