RNA–Protein interactions for RNA: ENST00000469602.1

SRRT-208, Transcript of serrate, RNA effector molecule, humanhuman

TSL 2

Gene SRRT, Length 376 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRT-208ENST00000469602 NISCHQ9Y2I1 1504 aa23.74■■□□□ 1.39
SRRT-208ENST00000469602 CCDC180Q9P1Z9 1646 aa21.16■□□□□ 0.98
SRRT-208ENST00000469602 ABCC9O60706 1549 aa20.68■□□□□ 0.9
SRRT-208ENST00000469602 RB1CC1Q8TDY2 1594 aa19.91■□□□□ 0.78
SRRT-208ENST00000469602 NACADO15069 1562 aa19.88■□□□□ 0.77
SRRT-208ENST00000469602 DCAF8L2P0C7V8 631 aa19.8■□□□□ 0.76
SRRT-208ENST00000469602 ZCCHC6Q5VYS8 1495 aaKnown RBP19.77■□□□□ 0.76
SRRT-208ENST00000469602 MYO15BQ96JP2 1530 aa19.75■□□□□ 0.75
SRRT-208ENST00000469602 DCAF1Q9Y4B6 1507 aa19.66■□□□□ 0.74
SRRT-208ENST00000469602 UNC13AQ9UPW8 1703 aa19.51■□□□□ 0.71
SRRT-208ENST00000469602 BICRAQ9NZM4 1560 aa19.32■□□□□ 0.68
SRRT-208ENST00000469602 PABPN1Q86U42 306 aaKnown RBP eCLIP19.31■□□□□ 0.682e-6■■■□□ 18.3
SRRT-208ENST00000469602 SCRIBQ14160 1630 aa19.29■□□□□ 0.68
SRRT-208ENST00000469602 SHROOM4Q9ULL8 1493 aa19.11■□□□□ 0.65
SRRT-208ENST00000469602 DNAJC5BQ9UF47 199 aa19■□□□□ 0.63
SRRT-208ENST00000469602 EIF4G1Q04637 1599 aaKnown RBP18.81■□□□□ 0.6
SRRT-208ENST00000469602 CC2D2AQ9P2K1 1620 aa18.74■□□□□ 0.59
SRRT-208ENST00000469602 CECR2Q9BXF3 1484 aa18.59■□□□□ 0.57
SRRT-208ENST00000469602 SMARCA4P51532 1647 aa18.45■□□□□ 0.54
SRRT-208ENST00000469602 BAZ1AQ9NRL2 1556 aaPredicted RBP18.42■□□□□ 0.54
SRRT-208ENST00000469602 SMARCA2P51531 1590 aa18.33■□□□□ 0.52
SRRT-208ENST00000469602 NCAPD3P42695 1498 aa18.33■□□□□ 0.52
SRRT-208ENST00000469602 ATAD2BQ9ULI0 1458 aa18.33■□□□□ 0.52
SRRT-208ENST00000469602 MROH2BQ7Z745 1585 aa18.3■□□□□ 0.52
SRRT-208ENST00000469602 PEG3Q9GZU2 1588 aa18.27■□□□□ 0.52
SRRT-208ENST00000469602 HMGXB3Q12766 1538 aa18.25■□□□□ 0.51
SRRT-208ENST00000469602 BAZ1BQ9UIG0 1483 aaKnown RBP18.19■□□□□ 0.5
SRRT-208ENST00000469602 WIZO95785 1651 aa18.11■□□□□ 0.49
SRRT-208ENST00000469602 RSF1Q96T23 1441 aaPredicted RBP18.06■□□□□ 0.48
SRRT-208ENST00000469602 TOP2AP11388 1531 aaKnown RBP17.92■□□□□ 0.46
SRRT-208ENST00000469602 NESP48681 1621 aa17.9■□□□□ 0.46
SRRT-208ENST00000469602 LAMC3Q9Y6N6 1575 aa17.87■□□□□ 0.45
SRRT-208ENST00000469602 ERCC6Q03468 1493 aa17.84■□□□□ 0.45
SRRT-208ENST00000469602 CADPSQ9ULU8 1353 aa17.79■□□□□ 0.44
SRRT-208ENST00000469602 KIF21AQ7Z4S6 1674 aa17.73■□□□□ 0.43
SRRT-208ENST00000469602 PDS5BQ9NTI5 1447 aa17.72■□□□□ 0.43
SRRT-208ENST00000469602 CCDC88BA6NC98 1476 aa17.69■□□□□ 0.42
SRRT-208ENST00000469602 CFTRP13569 1480 aa17.69■□□□□ 0.42
SRRT-208ENST00000469602 CUX2O14529 1486 aa17.67■□□□□ 0.42
SRRT-208ENST00000469602 THOC2Q8NI27 1593 aaKnown RBP17.66■□□□□ 0.42
SRRT-208ENST00000469602 PRDM2Q13029 1718 aa17.61■□□□□ 0.41
SRRT-208ENST00000469602 FANCD2Q9BXW9 1451 aa17.58■□□□□ 0.41
SRRT-208ENST00000469602 CEP164Q9UPV0 1460 aa17.57■□□□□ 0.4
SRRT-208ENST00000469602 MRC2Q9UBG0 1479 aa17.56■□□□□ 0.4
SRRT-208ENST00000469602 SUPT5HO00267 1087 aaKnown RBP17.55■□□□□ 0.4
SRRT-208ENST00000469602 WDR62O43379 1518 aa17.52■□□□□ 0.39
SRRT-208ENST00000469602 URB2Q14146 1524 aaKnown RBP17.42■□□□□ 0.38
SRRT-208ENST00000469602 ABCC8Q09428 1581 aa17.31■□□□□ 0.36
SRRT-208ENST00000469602 TOPBP1Q92547 1522 aa17.31■□□□□ 0.36
SRRT-208ENST00000469602 DNMBPQ6XZF7 1577 aa17.29■□□□□ 0.36
SRRT-208ENST00000469602 IFT140Q96RY7 1462 aa17.21■□□□□ 0.35
SRRT-208ENST00000469602 CUX1P39880 1505 aa17.16■□□□□ 0.34
SRRT-208ENST00000469602 POLA1P09884 1462 aaPredicted RBP17.16■□□□□ 0.34
SRRT-208ENST00000469602 DNAJC5Q9H3Z4 198 aa17.15■□□□□ 0.34
SRRT-208ENST00000469602 TARBP1Q13395 1621 aaKnown RBP17.14■□□□□ 0.33
SRRT-208ENST00000469602 ZNF608Q9ULD9 1512 aaPredicted RBP17.12■□□□□ 0.33
SRRT-208ENST00000469602 FGD5Q6ZNL6 1462 aa17.11■□□□□ 0.33
SRRT-208ENST00000469602 EIF4G3O43432 1585 aaKnown RBP17.08■□□□□ 0.32
SRRT-208ENST00000469602 RAD54L2Q9Y4B4 1467 aa17.07■□□□□ 0.32
SRRT-208ENST00000469602 SOGA1O94964 1423 aa17.07■□□□□ 0.32
SRRT-208ENST00000469602 WRNQ14191 1432 aaPredicted RBP eCLIP17.04■□□□□ 0.32
SRRT-208ENST00000469602 BIVM-ERCC5R4GMW8 1640 aa17.03■□□□□ 0.32
SRRT-208ENST00000469602 TOP2BQ02880 1626 aa17.03■□□□□ 0.32
SRRT-208ENST00000469602 AQRO60306 1485 aaKnown RBP eCLIP17.02■□□□□ 0.32
SRRT-208ENST00000469602 SYNJ1O43426 1573 aa17.02■□□□□ 0.31
SRRT-208ENST00000469602 WDR97A6NE52 1622 aa17.01■□□□□ 0.31
SRRT-208ENST00000469602 TDRD9Q8NDG6 1382 aaKnown RBP16.98■□□□□ 0.31
SRRT-208ENST00000469602 ABCA10Q8WWZ4 1543 aa16.95■□□□□ 0.3
SRRT-208ENST00000469602 OSCARQ8IYS5 282 aa16.91■□□□□ 0.3
SRRT-208ENST00000469602 ABCA5Q8WWZ7 1642 aa16.9■□□□□ 0.3
SRRT-208ENST00000469602 PBRM1Q86U86 1689 aa16.9■□□□□ 0.3
SRRT-208ENST00000469602 CHD1O14646 1710 aa16.9■□□□□ 0.3
SRRT-208ENST00000469602 GRIN2BQ13224 1484 aa16.89■□□□□ 0.29
SRRT-208ENST00000469602 GAPVD1Q14C86 1478 aa16.88■□□□□ 0.29
SRRT-208ENST00000469602 SNAPC4Q5SXM2 1469 aa16.87■□□□□ 0.29
SRRT-208ENST00000469602 MAGI1Q96QZ7 1491 aaPredicted RBP16.86■□□□□ 0.29
SRRT-208ENST00000469602 FBLN2P98095 1184 aa16.8■□□□□ 0.28
SRRT-208ENST00000469602 SYNJ2O15056 1496 aa16.79■□□□□ 0.28
SRRT-208ENST00000469602 CHMP7Q8WUX9 453 aaPredicted RBP16.76■□□□□ 0.27
SRRT-208ENST00000469602 ERICH3Q5RHP9 1530 aa16.75■□□□□ 0.27
SRRT-208ENST00000469602 ADAMTS12P58397 1594 aa16.74■□□□□ 0.27
SRRT-208ENST00000469602 FHAD1B1AJZ9 1412 aa16.69■□□□□ 0.26
SRRT-208ENST00000469602 KIF27Q86VH2 1401 aa16.69■□□□□ 0.26
SRRT-208ENST00000469602 RIMBP3CA6NJZ7 1639 aa16.68■□□□□ 0.26
SRRT-208ENST00000469602 RIMBP3BA6NNM3 1639 aa16.68■□□□□ 0.26
SRRT-208ENST00000469602 RIMBP3Q9UFD9 1639 aa16.68■□□□□ 0.26
SRRT-208ENST00000469602 CLASP1Q7Z460 1538 aa16.68■□□□□ 0.26
SRRT-208ENST00000469602 GRIN2AQ12879 1464 aa16.67■□□□□ 0.26
SRRT-208ENST00000469602 ARHGEF11O15085 1522 aa16.66■□□□□ 0.26
SRRT-208ENST00000469602 CUL7Q14999 1698 aa16.61■□□□□ 0.25
SRRT-208ENST00000469602 IGF1RP08069 1367 aa16.61■□□□□ 0.25
SRRT-208ENST00000469602 CEP170Q5SW79 1584 aa16.6■□□□□ 0.25
SRRT-208ENST00000469602 NUP160Q12769 1436 aa16.6■□□□□ 0.25
SRRT-208ENST00000469602 TRIM41Q8WV44 630 aa16.59■□□□□ 0.25
SRRT-208ENST00000469602 ARAP1Q96P48 1450 aa16.52■□□□□ 0.23
SRRT-208ENST00000469602 RUSC2Q8N2Y8 1516 aa16.51■□□□□ 0.23
SRRT-208ENST00000469602 SHROOM2Q13796 1616 aa16.51■□□□□ 0.23
SRRT-208ENST00000469602 CARMIL1Q5VZK9 1371 aa16.51■□□□□ 0.23
SRRT-208ENST00000469602 CYB5RLQ6IPT4 315 aa16.48■□□□□ 0.23
SRRT-208ENST00000469602 ERCC6L2Q5T890 1561 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms