RNA–Protein interactions for RNA: ENST00000469601.1

RTN4R-205, Transcript of reticulon 4 receptor, humanhuman

TSL 3

Gene RTN4R, Length 672 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4R-205ENST00000469601 NISCHQ9Y2I1 1504 aa52.22■■■■■ 5.95
RTN4R-205ENST00000469601 CCDC180Q9P1Z9 1646 aa46.57■■■■■ 5.05
RTN4R-205ENST00000469601 ABCC9O60706 1549 aa46■■■■■ 4.95
RTN4R-205ENST00000469601 RB1CC1Q8TDY2 1594 aa44.1■■■■■ 4.65
RTN4R-205ENST00000469601 NACADO15069 1562 aa43.97■■■■■ 4.63
RTN4R-205ENST00000469601 DCAF8L2P0C7V8 631 aa43.87■■■■■ 4.61
RTN4R-205ENST00000469601 MYO15BQ96JP2 1530 aa43.59■■■■■ 4.57
RTN4R-205ENST00000469601 ZCCHC6Q5VYS8 1495 aaKnown RBP43.39■■■■■ 4.54
RTN4R-205ENST00000469601 DCAF1Q9Y4B6 1507 aa43.22■■■■■ 4.51
RTN4R-205ENST00000469601 PABPN1Q86U42 306 aaKnown RBP eCLIP42.94■■■■■ 4.46
RTN4R-205ENST00000469601 UNC13AQ9UPW8 1703 aa42.87■■■■■ 4.45
RTN4R-205ENST00000469601 BICRAQ9NZM4 1560 aa42.69■■■■■ 4.42
RTN4R-205ENST00000469601 DNAJC5BQ9UF47 199 aa42.58■■■■■ 4.41
RTN4R-205ENST00000469601 SCRIBQ14160 1630 aa42.43■■■■■ 4.38
RTN4R-205ENST00000469601 SHROOM4Q9ULL8 1493 aa42.37■■■■■ 4.37
RTN4R-205ENST00000469601 EIF4G1Q04637 1599 aaKnown RBP41.64■■■■■ 4.26
RTN4R-205ENST00000469601 CC2D2AQ9P2K1 1620 aa41.56■■■■■ 4.24
RTN4R-205ENST00000469601 CECR2Q9BXF3 1484 aa41.42■■■■■ 4.22
RTN4R-205ENST00000469601 NCAPD3P42695 1498 aa40.58■■■■■ 4.09
RTN4R-205ENST00000469601 SMARCA4P51532 1647 aa40.56■■■■■ 4.08
RTN4R-205ENST00000469601 BAZ1AQ9NRL2 1556 aaPredicted RBP40.52■■■■■ 4.08
RTN4R-205ENST00000469601 ATAD2BQ9ULI0 1458 aa40.51■■■■■ 4.08
RTN4R-205ENST00000469601 SMARCA2P51531 1590 aa40.47■■■■■ 4.07
RTN4R-205ENST00000469601 HMGXB3Q12766 1538 aa40.32■■■■■ 4.04
RTN4R-205ENST00000469601 PEG3Q9GZU2 1588 aa40.21■■■■■ 4.03
RTN4R-205ENST00000469601 MROH2BQ7Z745 1585 aa40.19■■■■■ 4.02
RTN4R-205ENST00000469601 BAZ1BQ9UIG0 1483 aaKnown RBP40.17■■■■■ 4.02
RTN4R-205ENST00000469601 ERCC6Q03468 1493 aa39.75■■■■□ 3.95
RTN4R-205ENST00000469601 WIZO95785 1651 aa39.69■■■■□ 3.94
RTN4R-205ENST00000469601 NESP48681 1621 aa39.64■■■■□ 3.94
RTN4R-205ENST00000469601 RSF1Q96T23 1441 aaPredicted RBP39.63■■■■□ 3.93
RTN4R-205ENST00000469601 LAMC3Q9Y6N6 1575 aa39.55■■■■□ 3.92
RTN4R-205ENST00000469601 CUX2O14529 1486 aa39.49■■■■□ 3.91
RTN4R-205ENST00000469601 CADPSQ9ULU8 1353 aa39.39■■■■□ 3.9
RTN4R-205ENST00000469601 PDS5BQ9NTI5 1447 aa39.38■■■■□ 3.89
RTN4R-205ENST00000469601 TOP2AP11388 1531 aaKnown RBP39.33■■■■□ 3.89
RTN4R-205ENST00000469601 THOC2Q8NI27 1593 aaKnown RBP39.12■■■■□ 3.85
RTN4R-205ENST00000469601 KIF21AQ7Z4S6 1674 aa39.09■■■■□ 3.85
RTN4R-205ENST00000469601 CFTRP13569 1480 aa39.05■■■■□ 3.84
RTN4R-205ENST00000469601 MRC2Q9UBG0 1479 aa38.94■■■■□ 3.82
RTN4R-205ENST00000469601 CEP164Q9UPV0 1460 aa38.92■■■■□ 3.82
RTN4R-205ENST00000469601 FANCD2Q9BXW9 1451 aa38.91■■■■□ 3.82
RTN4R-205ENST00000469601 CCDC88BA6NC98 1476 aa38.87■■■■□ 3.81
RTN4R-205ENST00000469601 DNAJC5Q9H3Z4 198 aa38.79■■■■□ 3.8
RTN4R-205ENST00000469601 WDR62O43379 1518 aa38.79■■■■□ 3.8
RTN4R-205ENST00000469601 PRDM2Q13029 1718 aa38.55■■■■□ 3.76
RTN4R-205ENST00000469601 URB2Q14146 1524 aaKnown RBP38.5■■■■□ 3.75
RTN4R-205ENST00000469601 SUPT5HO00267 1087 aaKnown RBP38.33■■■■□ 3.73
RTN4R-205ENST00000469601 ABCC8Q09428 1581 aa38.28■■■■□ 3.72
RTN4R-205ENST00000469601 TOPBP1Q92547 1522 aa38.22■■■■□ 3.71
RTN4R-205ENST00000469601 IFT140Q96RY7 1462 aa38.13■■■■□ 3.69
RTN4R-205ENST00000469601 DNMBPQ6XZF7 1577 aa38.13■■■■□ 3.69
RTN4R-205ENST00000469601 ZNF608Q9ULD9 1512 aaPredicted RBP37.92■■■■□ 3.66
RTN4R-205ENST00000469601 POLA1P09884 1462 aaPredicted RBP37.86■■■■□ 3.65
RTN4R-205ENST00000469601 OSCARQ8IYS5 282 aa37.83■■■■□ 3.65
RTN4R-205ENST00000469601 TARBP1Q13395 1621 aaKnown RBP37.78■■■■□ 3.64
RTN4R-205ENST00000469601 SOGA1O94964 1423 aa37.75■■■■□ 3.63
RTN4R-205ENST00000469601 CUX1P39880 1505 aa37.74■■■■□ 3.63
RTN4R-205ENST00000469601 EIF4G3O43432 1585 aaKnown RBP37.73■■■■□ 3.63
RTN4R-205ENST00000469601 FGD5Q6ZNL6 1462 aa37.71■■■■□ 3.63
RTN4R-205ENST00000469601 AQRO60306 1485 aaKnown RBP eCLIP37.68■■■■□ 3.62
RTN4R-205ENST00000469601 RAD54L2Q9Y4B4 1467 aa37.68■■■■□ 3.62
RTN4R-205ENST00000469601 TDRD9Q8NDG6 1382 aaKnown RBP37.57■■■■□ 3.61
RTN4R-205ENST00000469601 WDR97A6NE52 1622 aa37.54■■■■□ 3.6
RTN4R-205ENST00000469601 WRNQ14191 1432 aaPredicted RBP eCLIP37.41■■■■□ 3.58
RTN4R-205ENST00000469601 FBLN2P98095 1184 aa37.39■■■■□ 3.58
RTN4R-205ENST00000469601 GRIN2BQ13224 1484 aa37.37■■■■□ 3.57
RTN4R-205ENST00000469601 ABCA10Q8WWZ4 1543 aa37.35■■■■□ 3.57
RTN4R-205ENST00000469601 SNAPC4Q5SXM2 1469 aa37.32■■■■□ 3.56
RTN4R-205ENST00000469601 TRIM41Q8WV44 630 aa37.31■■■■□ 3.56
RTN4R-205ENST00000469601 TOP2BQ02880 1626 aa37.31■■■■□ 3.56
RTN4R-205ENST00000469601 MAGI1Q96QZ7 1491 aaPredicted RBP37.31■■■■□ 3.56
RTN4R-205ENST00000469601 GAPVD1Q14C86 1478 aa37.29■■■■□ 3.56
RTN4R-205ENST00000469601 BIVM-ERCC5R4GMW8 1640 aa37.28■■■■□ 3.56
RTN4R-205ENST00000469601 CHD1O14646 1710 aa37.27■■■■□ 3.56
RTN4R-205ENST00000469601 CHMP7Q8WUX9 453 aaPredicted RBP37.24■■■■□ 3.55
RTN4R-205ENST00000469601 SYNJ1O43426 1573 aa37.23■■■■□ 3.55
RTN4R-205ENST00000469601 ABCA5Q8WWZ7 1642 aa37.17■■■■□ 3.54
RTN4R-205ENST00000469601 SYNJ2O15056 1496 aa37.16■■■■□ 3.54
RTN4R-205ENST00000469601 ARHGEF11O15085 1522 aa37.11■■■■□ 3.53
RTN4R-205ENST00000469601 RIMBP3CA6NJZ7 1639 aa37.11■■■■□ 3.53
RTN4R-205ENST00000469601 RIMBP3BA6NNM3 1639 aa37.11■■■■□ 3.53
RTN4R-205ENST00000469601 RIMBP3Q9UFD9 1639 aa37.11■■■■□ 3.53
RTN4R-205ENST00000469601 PBRM1Q86U86 1689 aa37.11■■■■□ 3.53
RTN4R-205ENST00000469601 CLASP1Q7Z460 1538 aa36.95■■■■□ 3.5
RTN4R-205ENST00000469601 ERICH3Q5RHP9 1530 aa36.9■■■■□ 3.5
RTN4R-205ENST00000469601 FHAD1B1AJZ9 1412 aa36.87■■■■□ 3.49
RTN4R-205ENST00000469601 CYB5RLQ6IPT4 315 aa36.86■■■■□ 3.49
RTN4R-205ENST00000469601 GRIN2AQ12879 1464 aa36.85■■■■□ 3.49
RTN4R-205ENST00000469601 ADAMTS12P58397 1594 aa36.85■■■■□ 3.49
RTN4R-205ENST00000469601 ARAP1Q96P48 1450 aa36.77■■■■□ 3.48
RTN4R-205ENST00000469601 NUP160Q12769 1436 aa36.71■■■■□ 3.47
RTN4R-205ENST00000469601 KIF27Q86VH2 1401 aa36.7■■■■□ 3.47
RTN4R-205ENST00000469601 CEP170Q5SW79 1584 aa36.61■■■■□ 3.45
RTN4R-205ENST00000469601 IGF1RP08069 1367 aa36.57■■■■□ 3.45
RTN4R-205ENST00000469601 CUL7Q14999 1698 aa36.45■■■■□ 3.42
RTN4R-205ENST00000469601 SHROOM2Q13796 1616 aa36.41■■■■□ 3.42
RTN4R-205ENST00000469601 JPH4Q96JJ6 628 aa36.38■■■■□ 3.41
RTN4R-205ENST00000469601 CARMIL1Q5VZK9 1371 aa36.36■■■■□ 3.41
RTN4R-205ENST00000469601 ERCC6L2Q5T890 1561 aa36.34■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms