RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 NISCHQ9Y2I1 1504 aa30.81■■■□□ 2.52
HDAC3-204ENST00000469207 ABCC9O60706 1549 aa27.84■■■□□ 2.05
HDAC3-204ENST00000469207 CCDC180Q9P1Z9 1646 aa27.53■■■□□ 2
HDAC3-204ENST00000469207 DNAJC5BQ9UF47 199 aa26.33■■□□□ 1.81
HDAC3-204ENST00000469207 RB1CC1Q8TDY2 1594 aa26.31■■□□□ 1.8
HDAC3-204ENST00000469207 DCAF8L2P0C7V8 631 aa26.27■■□□□ 1.8
HDAC3-204ENST00000469207 NACADO15069 1562 aa26.11■■□□□ 1.77
HDAC3-204ENST00000469207 PABPN1Q86U42 306 aaKnown RBP eCLIP26.02■■□□□ 1.76
HDAC3-204ENST00000469207 UNC13AQ9UPW8 1703 aa25.76■■□□□ 1.71
HDAC3-204ENST00000469207 MYO15BQ96JP2 1530 aa25.67■■□□□ 1.7
HDAC3-204ENST00000469207 BICRAQ9NZM4 1560 aa25.64■■□□□ 1.69
HDAC3-204ENST00000469207 ZCCHC6Q5VYS8 1495 aaKnown RBP25.47■■□□□ 1.67
HDAC3-204ENST00000469207 DCAF1Q9Y4B6 1507 aa25.33■■□□□ 1.65
HDAC3-204ENST00000469207 SCRIBQ14160 1630 aa25.24■■□□□ 1.63
HDAC3-204ENST00000469207 CC2D2AQ9P2K1 1620 aa25.08■■□□□ 1.6
HDAC3-204ENST00000469207 SHROOM4Q9ULL8 1493 aa25.07■■□□□ 1.6
HDAC3-204ENST00000469207 CECR2Q9BXF3 1484 aa25.03■■□□□ 1.6
HDAC3-204ENST00000469207 EIF4G1Q04637 1599 aaKnown RBP24.98■■□□□ 1.59
HDAC3-204ENST00000469207 NCAPD3P42695 1498 aa24.17■■□□□ 1.46
HDAC3-204ENST00000469207 DNAJC5Q9H3Z4 198 aa24.12■■□□□ 1.45
HDAC3-204ENST00000469207 ATAD2BQ9ULI0 1458 aa24.11■■□□□ 1.45
HDAC3-204ENST00000469207 SMARCA4P51532 1647 aa24.02■■□□□ 1.44
HDAC3-204ENST00000469207 ERCC6Q03468 1493 aa23.97■■□□□ 1.43
HDAC3-204ENST00000469207 SMARCA2P51531 1590 aa23.95■■□□□ 1.42
HDAC3-204ENST00000469207 NESP48681 1621 aa23.92■■□□□ 1.42
HDAC3-204ENST00000469207 HMGXB3Q12766 1538 aa23.9■■□□□ 1.42
HDAC3-204ENST00000469207 CUX2O14529 1486 aa23.88■■□□□ 1.41
HDAC3-204ENST00000469207 BAZ1AQ9NRL2 1556 aaPredicted RBP23.86■■□□□ 1.41
HDAC3-204ENST00000469207 BAZ1BQ9UIG0 1483 aaKnown RBP23.84■■□□□ 1.41
HDAC3-204ENST00000469207 MROH2BQ7Z745 1585 aa23.8■■□□□ 1.4
HDAC3-204ENST00000469207 PEG3Q9GZU2 1588 aa23.73■■□□□ 1.39
HDAC3-204ENST00000469207 LAMC3Q9Y6N6 1575 aa23.57■■□□□ 1.36
HDAC3-204ENST00000469207 THOC2Q8NI27 1593 aaKnown RBP23.56■■□□□ 1.36
HDAC3-204ENST00000469207 KIF21AQ7Z4S6 1674 aa23.51■■□□□ 1.35
HDAC3-204ENST00000469207 WIZO95785 1651 aa23.5■■□□□ 1.35
HDAC3-204ENST00000469207 PDS5BQ9NTI5 1447 aa23.49■■□□□ 1.35
HDAC3-204ENST00000469207 CADPSQ9ULU8 1353 aa23.47■■□□□ 1.35
HDAC3-204ENST00000469207 MRC2Q9UBG0 1479 aa23.29■■□□□ 1.32
HDAC3-204ENST00000469207 RSF1Q96T23 1441 aaPredicted RBP23.28■■□□□ 1.32
HDAC3-204ENST00000469207 WDR62O43379 1518 aa23.21■■□□□ 1.31
HDAC3-204ENST00000469207 FANCD2Q9BXW9 1451 aa23.18■■□□□ 1.3
HDAC3-204ENST00000469207 CEP164Q9UPV0 1460 aa23.17■■□□□ 1.3
HDAC3-204ENST00000469207 CFTRP13569 1480 aa23.15■■□□□ 1.3
HDAC3-204ENST00000469207 TRIM41Q8WV44 630 aa23.11■■□□□ 1.29
HDAC3-204ENST00000469207 TOP2AP11388 1531 aaKnown RBP23.1■■□□□ 1.29
HDAC3-204ENST00000469207 URB2Q14146 1524 aaKnown RBP23.02■■□□□ 1.28
HDAC3-204ENST00000469207 CCDC88BA6NC98 1476 aa22.95■■□□□ 1.26
HDAC3-204ENST00000469207 OSCARQ8IYS5 282 aa22.92■■□□□ 1.26
HDAC3-204ENST00000469207 ZNF608Q9ULD9 1512 aaPredicted RBP22.79■■□□□ 1.24
HDAC3-204ENST00000469207 PRDM2Q13029 1718 aa22.78■■□□□ 1.24
HDAC3-204ENST00000469207 TOPBP1Q92547 1522 aa22.73■■□□□ 1.23
HDAC3-204ENST00000469207 IFT140Q96RY7 1462 aa22.71■■□□□ 1.23
HDAC3-204ENST00000469207 AQRO60306 1485 aaKnown RBP eCLIP22.6■■□□□ 1.214e-8■■■■■ 29.1
HDAC3-204ENST00000469207 ABCC8Q09428 1581 aa22.59■■□□□ 1.21
HDAC3-204ENST00000469207 DNMBPQ6XZF7 1577 aa22.59■■□□□ 1.21
HDAC3-204ENST00000469207 RIMBP3CA6NJZ7 1639 aa22.56■■□□□ 1.2
HDAC3-204ENST00000469207 RIMBP3BA6NNM3 1639 aa22.56■■□□□ 1.2
HDAC3-204ENST00000469207 RIMBP3Q9UFD9 1639 aa22.56■■□□□ 1.2
HDAC3-204ENST00000469207 EIF4G3O43432 1585 aaKnown RBP22.55■■□□□ 1.2
HDAC3-204ENST00000469207 FBLN2P98095 1184 aa22.52■■□□□ 1.2
HDAC3-204ENST00000469207 TARBP1Q13395 1621 aaKnown RBP22.51■■□□□ 1.19
HDAC3-204ENST00000469207 RAD54L2Q9Y4B4 1467 aa22.51■■□□□ 1.19
HDAC3-204ENST00000469207 POLA1P09884 1462 aaPredicted RBP22.5■■□□□ 1.19
HDAC3-204ENST00000469207 ARHGEF11O15085 1522 aa22.48■■□□□ 1.19
HDAC3-204ENST00000469207 CYB5RLQ6IPT4 315 aa22.46■■□□□ 1.19
HDAC3-204ENST00000469207 TDRD9Q8NDG6 1382 aaKnown RBP22.46■■□□□ 1.19
HDAC3-204ENST00000469207 SOGA1O94964 1423 aa22.44■■□□□ 1.18
HDAC3-204ENST00000469207 CHD1O14646 1710 aa22.42■■□□□ 1.18
HDAC3-204ENST00000469207 FGD5Q6ZNL6 1462 aa22.36■■□□□ 1.17
HDAC3-204ENST00000469207 CUX1P39880 1505 aa22.34■■□□□ 1.17
HDAC3-204ENST00000469207 SUPT5HO00267 1087 aaKnown RBP22.33■■□□□ 1.17
HDAC3-204ENST00000469207 SNAPC4Q5SXM2 1469 aa22.29■■□□□ 1.16
HDAC3-204ENST00000469207 CHMP7Q8WUX9 453 aaPredicted RBP22.28■■□□□ 1.16
HDAC3-204ENST00000469207 ARAP1Q96P48 1450 aa22.28■■□□□ 1.16
HDAC3-204ENST00000469207 TRHP20396 242 aaPredicted RBP22.23■■□□□ 1.15
HDAC3-204ENST00000469207 GRIN2BQ13224 1484 aa22.18■■□□□ 1.14
HDAC3-204ENST00000469207 MAGI1Q96QZ7 1491 aaPredicted RBP22.15■■□□□ 1.14
HDAC3-204ENST00000469207 CLASP1Q7Z460 1538 aa22.14■■□□□ 1.13
HDAC3-204ENST00000469207 WDR97A6NE52 1622 aa22.13■■□□□ 1.13
HDAC3-204ENST00000469207 GAPVD1Q14C86 1478 aa22.13■■□□□ 1.13
HDAC3-204ENST00000469207 SYNJ2O15056 1496 aa22.11■■□□□ 1.13
HDAC3-204ENST00000469207 SYNJ1O43426 1573 aa22.09■■□□□ 1.13
HDAC3-204ENST00000469207 PBRM1Q86U86 1689 aa22.06■■□□□ 1.12
HDAC3-204ENST00000469207 ABCA10Q8WWZ4 1543 aa22.06■■□□□ 1.12
HDAC3-204ENST00000469207 ABCA5Q8WWZ7 1642 aa22■■□□□ 1.11
HDAC3-204ENST00000469207 WRNQ14191 1432 aaPredicted RBP eCLIP21.97■■□□□ 1.11
HDAC3-204ENST00000469207 ERCC6L2Q5T890 1561 aa21.91■■□□□ 1.1
HDAC3-204ENST00000469207 GRIN2AQ12879 1464 aa21.9■■□□□ 1.1
HDAC3-204ENST00000469207 TOP2BQ02880 1626 aa21.89■■□□□ 1.09
HDAC3-204ENST00000469207 BIVM-ERCC5R4GMW8 1640 aa21.88■■□□□ 1.09
HDAC3-204ENST00000469207 ADAMTS12P58397 1594 aa21.85■■□□□ 1.09
HDAC3-204ENST00000469207 CEP170Q5SW79 1584 aa21.85■■□□□ 1.09
HDAC3-204ENST00000469207 NUP160Q12769 1436 aa21.83■■□□□ 1.09
HDAC3-204ENST00000469207 FHAD1B1AJZ9 1412 aa21.81■■□□□ 1.08
HDAC3-204ENST00000469207 ERICH3Q5RHP9 1530 aa21.75■■□□□ 1.07
HDAC3-204ENST00000469207 JPH4Q96JJ6 628 aa21.72■■□□□ 1.07
HDAC3-204ENST00000469207 SHROOM2Q13796 1616 aa21.7■■□□□ 1.06
HDAC3-204ENST00000469207 PRG4Q92954 1404 aaPredicted RBP21.69■■□□□ 1.06
HDAC3-204ENST00000469207 AEBP2Q6ZN18 517 aaPredicted RBP21.59■■□□□ 1.05
HDAC3-204ENST00000469207 IGF1RP08069 1367 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms