RNA–Protein interactions for RNA: ENST00000469129.1

SMC1A-205, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-205ENST00000469129 NISCHQ9Y2I1 1504 aa21.06■□□□□ 0.96
SMC1A-205ENST00000469129 CCDC180Q9P1Z9 1646 aa18.56■□□□□ 0.56
SMC1A-205ENST00000469129 ZCCHC6Q5VYS8 1495 aaKnown RBP17.75■□□□□ 0.43
SMC1A-205ENST00000469129 ABCC9O60706 1549 aa17.66■□□□□ 0.42
SMC1A-205ENST00000469129 DCAF1Q9Y4B6 1507 aa17.52■□□□□ 0.39
SMC1A-205ENST00000469129 MYO15BQ96JP2 1530 aa17.27■□□□□ 0.36
SMC1A-205ENST00000469129 NACADO15069 1562 aa17.13■□□□□ 0.33
SMC1A-205ENST00000469129 DCAF8L2P0C7V8 631 aa17.11■□□□□ 0.33
SMC1A-205ENST00000469129 SHROOM4Q9ULL8 1493 aa17.06■□□□□ 0.32
SMC1A-205ENST00000469129 RB1CC1Q8TDY2 1594 aa16.98■□□□□ 0.31
SMC1A-205ENST00000469129 SCRIBQ14160 1630 aa16.9■□□□□ 0.3
SMC1A-205ENST00000469129 UNC13AQ9UPW8 1703 aa16.72■□□□□ 0.27
SMC1A-205ENST00000469129 PABPN1Q86U42 306 aaKnown RBP eCLIP16.46■□□□□ 0.23
SMC1A-205ENST00000469129 BICRAQ9NZM4 1560 aa16.43■□□□□ 0.22
SMC1A-205ENST00000469129 SUPT5HO00267 1087 aaKnown RBP16.43■□□□□ 0.22
SMC1A-205ENST00000469129 BAZ1AQ9NRL2 1556 aaPredicted RBP16.33■□□□□ 0.2
SMC1A-205ENST00000469129 RSF1Q96T23 1441 aaPredicted RBP16.28■□□□□ 0.2
SMC1A-205ENST00000469129 SMARCA4P51532 1647 aa16.25■□□□□ 0.19
SMC1A-205ENST00000469129 CECR2Q9BXF3 1484 aa16.24■□□□□ 0.19
SMC1A-205ENST00000469129 MROH2BQ7Z745 1585 aa16.22■□□□□ 0.19
SMC1A-205ENST00000469129 DNAJC5BQ9UF47 199 aa16.22■□□□□ 0.19
SMC1A-205ENST00000469129 WIZO95785 1651 aa16.17■□□□□ 0.18
SMC1A-205ENST00000469129 PEG3Q9GZU2 1588 aa16.07■□□□□ 0.16
SMC1A-205ENST00000469129 TOP2AP11388 1531 aaKnown RBP16.05■□□□□ 0.16
SMC1A-205ENST00000469129 EIF4G1Q04637 1599 aaKnown RBP16.02■□□□□ 0.16
SMC1A-205ENST00000469129 CC2D2AQ9P2K1 1620 aa15.97■□□□□ 0.15
SMC1A-205ENST00000469129 SMARCA2P51531 1590 aa15.96■□□□□ 0.15
SMC1A-205ENST00000469129 ATAD2BQ9ULI0 1458 aa15.84■□□□□ 0.13
SMC1A-205ENST00000469129 HMGXB3Q12766 1538 aa15.83■□□□□ 0.12
SMC1A-205ENST00000469129 BAZ1BQ9UIG0 1483 aaKnown RBP15.82■□□□□ 0.12
SMC1A-205ENST00000469129 CHIC1Q5VXU3 224 aa15.8■□□□□ 0.12
SMC1A-205ENST00000469129 CCDC88BA6NC98 1476 aa15.76■□□□□ 0.11
SMC1A-205ENST00000469129 NCAPD3P42695 1498 aa15.7■□□□□ 0.1
SMC1A-205ENST00000469129 PRDM2Q13029 1718 aa15.63■□□□□ 0.09
SMC1A-205ENST00000469129 TRIM41Q8WV44 630 aa15.5■□□□□ 0.07
SMC1A-205ENST00000469129 ABCC8Q09428 1581 aa15.49■□□□□ 0.07
SMC1A-205ENST00000469129 BIVM-ERCC5R4GMW8 1640 aa15.39■□□□□ 0.05
SMC1A-205ENST00000469129 WRNQ14191 1432 aaPredicted RBP eCLIP15.39■□□□□ 0.05
SMC1A-205ENST00000469129 CFTRP13569 1480 aa15.39■□□□□ 0.05
SMC1A-205ENST00000469129 SYNJ1O43426 1573 aa15.36■□□□□ 0.05
SMC1A-205ENST00000469129 TOP2BQ02880 1626 aa15.35■□□□□ 0.05
SMC1A-205ENST00000469129 EEA1Q15075 1411 aa15.31■□□□□ 0.04
SMC1A-205ENST00000469129 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
SMC1A-205ENST00000469129 CADPSQ9ULU8 1353 aa15.26■□□□□ 0.03
SMC1A-205ENST00000469129 NESP48681 1621 aa15.25■□□□□ 0.03
SMC1A-205ENST00000469129 ERCC6Q03468 1493 aa15.23■□□□□ 0.03
SMC1A-205ENST00000469129 CUX1P39880 1505 aa15.2■□□□□ 0.02
SMC1A-205ENST00000469129 FANCD2Q9BXW9 1451 aa15.15■□□□□ 0.02
SMC1A-205ENST00000469129 KIF21BO75037 1637 aa15.15■□□□□ 0.02
SMC1A-205ENST00000469129 FAM9AQ8IZU1 332 aaPredicted RBP15.14■□□□□ 0.01
SMC1A-205ENST00000469129 DNMBPQ6XZF7 1577 aa15.13■□□□□ 0.01
SMC1A-205ENST00000469129 SOGA1O94964 1423 aa15.12■□□□□ 0.01
SMC1A-205ENST00000469129 KIF21AQ7Z4S6 1674 aa15.11■□□□□ 0.01
SMC1A-205ENST00000469129 LOC105371045A0A1W2PR82 267 aa15.1■□□□□ 0.01
SMC1A-205ENST00000469129 PDS5BQ9NTI5 1447 aa15.09■□□□□ 0.01
SMC1A-205ENST00000469129 CEP164Q9UPV0 1460 aa15.09■□□□□ 0.01
SMC1A-205ENST00000469129 CUX2O14529 1486 aa15.08■□□□□ 0
SMC1A-205ENST00000469129 GOLGA3Q08378 1498 aa15.07■□□□□ 0
SMC1A-205ENST00000469129 THOC2Q8NI27 1593 aaKnown RBP15.06■□□□□ 0
SMC1A-205ENST00000469129 RUSC2Q8N2Y8 1516 aa15.05■□□□□ -0
SMC1A-205ENST00000469129 FGD5Q6ZNL6 1462 aa15.02■□□□□ -0
SMC1A-205ENST00000469129 CSRNP3Q8WYN3 585 aa15.02■□□□□ -0
SMC1A-205ENST00000469129 ERICH3Q5RHP9 1530 aa15.02□□□□□ -0.01
SMC1A-205ENST00000469129 TOPBP1Q92547 1522 aa15.02□□□□□ -0.01
SMC1A-205ENST00000469129 WDR97A6NE52 1622 aa15.01□□□□□ -0.01
SMC1A-205ENST00000469129 KIF27Q86VH2 1401 aa15□□□□□ -0.01
SMC1A-205ENST00000469129 MRC2Q9UBG0 1479 aa14.96□□□□□ -0.01
SMC1A-205ENST00000469129 TNIKQ9UKE5 1360 aa14.96□□□□□ -0.02
SMC1A-205ENST00000469129 URB2Q14146 1524 aaKnown RBP14.94□□□□□ -0.02
SMC1A-205ENST00000469129 POLA1P09884 1462 aaPredicted RBP14.93□□□□□ -0.02
SMC1A-205ENST00000469129 WDR62O43379 1518 aa14.92□□□□□ -0.02
SMC1A-205ENST00000469129 ABCA10Q8WWZ4 1543 aa14.92□□□□□ -0.02
SMC1A-205ENST00000469129 CUL7Q14999 1698 aa14.91□□□□□ -0.02
SMC1A-205ENST00000469129 CEP162Q5TB80 1403 aa14.91□□□□□ -0.02
SMC1A-205ENST00000469129 PRXQ9BXM0 1461 aa14.9□□□□□ -0.02
SMC1A-205ENST00000469129 ABCA5Q8WWZ7 1642 aa14.87□□□□□ -0.03
SMC1A-205ENST00000469129 RAPGEF2Q9Y4G8 1499 aa14.87□□□□□ -0.03
SMC1A-205ENST00000469129 EHMT2Q96KQ7 1210 aa14.86□□□□□ -0.03
SMC1A-205ENST00000469129 UBTFP17480 764 aaKnown RBP14.83□□□□□ -0.04
SMC1A-205ENST00000469129 TARBP1Q13395 1621 aaKnown RBP14.83□□□□□ -0.04
SMC1A-205ENST00000469129 PBRM1Q86U86 1689 aa14.83□□□□□ -0.04
SMC1A-205ENST00000469129 RAD54L2Q9Y4B4 1467 aa14.81□□□□□ -0.04
SMC1A-205ENST00000469129 CTTNBP2Q8WZ74 1663 aa14.81□□□□□ -0.04
SMC1A-205ENST00000469129 CLIP1P30622 1438 aa14.76□□□□□ -0.05
SMC1A-205ENST00000469129 IGF1RP08069 1367 aa14.74□□□□□ -0.05
SMC1A-205ENST00000469129 GAPVD1Q14C86 1478 aa14.72□□□□□ -0.05
SMC1A-205ENST00000469129 IFT140Q96RY7 1462 aa14.72□□□□□ -0.05
SMC1A-205ENST00000469129 CARMIL1Q5VZK9 1371 aa14.72□□□□□ -0.05
SMC1A-205ENST00000469129 VPS8Q8N3P4 1428 aa14.68□□□□□ -0.06
SMC1A-205ENST00000469129 ADAMTS12P58397 1594 aa14.67□□□□□ -0.06
SMC1A-205ENST00000469129 DNAJC5Q9H3Z4 198 aa14.66□□□□□ -0.06
SMC1A-205ENST00000469129 EIF4G3O43432 1585 aaKnown RBP14.65□□□□□ -0.06
SMC1A-205ENST00000469129 TRIM26Q12899 539 aaPredicted RBP14.64□□□□□ -0.07
SMC1A-205ENST00000469129 EFCAB5A4FU69 1503 aa14.64□□□□□ -0.07
SMC1A-205ENST00000469129 GRIN2BQ13224 1484 aa14.62□□□□□ -0.07
SMC1A-205ENST00000469129 ARAP1Q96P48 1450 aa14.62□□□□□ -0.07
SMC1A-205ENST00000469129 TDRD9Q8NDG6 1382 aaKnown RBP14.6□□□□□ -0.07
SMC1A-205ENST00000469129 ZNF608Q9ULD9 1512 aaPredicted RBP14.59□□□□□ -0.07
SMC1A-205ENST00000469129 ARHGAP35Q9NRY4 1499 aa14.58□□□□□ -0.08
SMC1A-205ENST00000469129 FHAD1B1AJZ9 1412 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms