RNA–Protein interactions for RNA: ENST00000469114.1

UPK3B-204, Transcript of uroplakin 3B, humanhuman

TSL 3

Gene UPK3B, Length 530 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3B-204ENST00000469114 NISCHQ9Y2I1 1504 aa49.57■■■■■ 5.53
UPK3B-204ENST00000469114 ABCC9O60706 1549 aa45.11■■■■■ 4.81
UPK3B-204ENST00000469114 CCDC180Q9P1Z9 1646 aa44.73■■■■■ 4.75
UPK3B-204ENST00000469114 RB1CC1Q8TDY2 1594 aa42.79■■■■■ 4.44
UPK3B-204ENST00000469114 DNAJC5BQ9UF47 199 aa42.65■■■■■ 4.42
UPK3B-204ENST00000469114 NACADO15069 1562 aa42.38■■■■■ 4.37
UPK3B-204ENST00000469114 DCAF8L2P0C7V8 631 aa42.01■■■■■ 4.32
UPK3B-204ENST00000469114 PABPN1Q86U42 306 aaKnown RBP eCLIP41.9■■■■■ 4.3
UPK3B-204ENST00000469114 UNC13AQ9UPW8 1703 aa41.79■■■■■ 4.28
UPK3B-204ENST00000469114 MYO15BQ96JP2 1530 aa41.65■■■■■ 4.26
UPK3B-204ENST00000469114 BICRAQ9NZM4 1560 aa41.51■■■■■ 4.24
UPK3B-204ENST00000469114 ZCCHC6Q5VYS8 1495 aaKnown RBP40.99■■■■■ 4.15
UPK3B-204ENST00000469114 SHROOM4Q9ULL8 1493 aa40.98■■■■■ 4.15
UPK3B-204ENST00000469114 DCAF1Q9Y4B6 1507 aa40.94■■■■■ 4.14
UPK3B-204ENST00000469114 CC2D2AQ9P2K1 1620 aa40.74■■■■■ 4.11
UPK3B-204ENST00000469114 CECR2Q9BXF3 1484 aa40.7■■■■■ 4.11
UPK3B-204ENST00000469114 SCRIBQ14160 1630 aa40.69■■■■■ 4.1
UPK3B-204ENST00000469114 EIF4G1Q04637 1599 aaKnown RBP40.55■■■■■ 4.08
UPK3B-204ENST00000469114 DNAJC5Q9H3Z4 198 aa39.56■■■■□ 3.92
UPK3B-204ENST00000469114 CUX2O14529 1486 aa39.11■■■■□ 3.85
UPK3B-204ENST00000469114 NCAPD3P42695 1498 aa39.11■■■■□ 3.85
UPK3B-204ENST00000469114 ERCC6Q03468 1493 aa39.02■■■■□ 3.84
UPK3B-204ENST00000469114 ATAD2BQ9ULI0 1458 aa38.91■■■■□ 3.82
UPK3B-204ENST00000469114 SMARCA2P51531 1590 aa38.82■■■■□ 3.81
UPK3B-204ENST00000469114 HMGXB3Q12766 1538 aa38.8■■■■□ 3.8
UPK3B-204ENST00000469114 SMARCA4P51532 1647 aa38.78■■■■□ 3.8
UPK3B-204ENST00000469114 NESP48681 1621 aa38.6■■■■□ 3.77
UPK3B-204ENST00000469114 BAZ1BQ9UIG0 1483 aaKnown RBP38.54■■■■□ 3.76
UPK3B-204ENST00000469114 BAZ1AQ9NRL2 1556 aaPredicted RBP38.53■■■■□ 3.76
UPK3B-204ENST00000469114 PEG3Q9GZU2 1588 aa38.41■■■■□ 3.74
UPK3B-204ENST00000469114 THOC2Q8NI27 1593 aaKnown RBP38.35■■■■□ 3.73
UPK3B-204ENST00000469114 LAMC3Q9Y6N6 1575 aa38.32■■■■□ 3.73
UPK3B-204ENST00000469114 MROH2BQ7Z745 1585 aa38.17■■■■□ 3.7
UPK3B-204ENST00000469114 KIF21AQ7Z4S6 1674 aa38.14■■■■□ 3.7
UPK3B-204ENST00000469114 PDS5BQ9NTI5 1447 aa38.12■■■■□ 3.69
UPK3B-204ENST00000469114 CADPSQ9ULU8 1353 aa37.89■■■■□ 3.66
UPK3B-204ENST00000469114 MRC2Q9UBG0 1479 aa37.81■■■■□ 3.64
UPK3B-204ENST00000469114 WDR62O43379 1518 aa37.72■■■■□ 3.63
UPK3B-204ENST00000469114 WIZO95785 1651 aa37.7■■■■□ 3.63
UPK3B-204ENST00000469114 TRIM41Q8WV44 630 aa37.63■■■■□ 3.61
UPK3B-204ENST00000469114 CEP164Q9UPV0 1460 aa37.57■■■■□ 3.6
UPK3B-204ENST00000469114 FANCD2Q9BXW9 1451 aa37.47■■■■□ 3.59
UPK3B-204ENST00000469114 CFTRP13569 1480 aa37.37■■■■□ 3.57
UPK3B-204ENST00000469114 TOP2AP11388 1531 aaKnown RBP37.22■■■■□ 3.55
UPK3B-204ENST00000469114 OSCARQ8IYS5 282 aa37.22■■■■□ 3.55
UPK3B-204ENST00000469114 RSF1Q96T23 1441 aaPredicted RBP37.21■■■■□ 3.55
UPK3B-204ENST00000469114 URB2Q14146 1524 aaKnown RBP37.17■■■■□ 3.54
UPK3B-204ENST00000469114 PRDM2Q13029 1718 aa37.01■■■■□ 3.51
UPK3B-204ENST00000469114 IFT140Q96RY7 1462 aa36.84■■■■□ 3.49
UPK3B-204ENST00000469114 RIMBP3CA6NJZ7 1639 aa36.8■■■■□ 3.48
UPK3B-204ENST00000469114 RIMBP3BA6NNM3 1639 aa36.8■■■■□ 3.48
UPK3B-204ENST00000469114 RIMBP3Q9UFD9 1639 aa36.8■■■■□ 3.48
UPK3B-204ENST00000469114 ZNF608Q9ULD9 1512 aaPredicted RBP36.78■■■■□ 3.48
UPK3B-204ENST00000469114 CCDC88BA6NC98 1476 aa36.77■■■■□ 3.48
UPK3B-204ENST00000469114 TOPBP1Q92547 1522 aa36.71■■■■□ 3.47
UPK3B-204ENST00000469114 ABCC8Q09428 1581 aa36.64■■■■□ 3.46
UPK3B-204ENST00000469114 ARHGEF11O15085 1522 aa36.63■■■■□ 3.45
UPK3B-204ENST00000469114 EIF4G3O43432 1585 aaKnown RBP36.59■■■■□ 3.45
UPK3B-204ENST00000469114 DNMBPQ6XZF7 1577 aa36.56■■■■□ 3.44
UPK3B-204ENST00000469114 TARBP1Q13395 1621 aaKnown RBP36.41■■■■□ 3.42
UPK3B-204ENST00000469114 CHD1O14646 1710 aa36.41■■■■□ 3.42
UPK3B-204ENST00000469114 AQRO60306 1485 aaKnown RBP eCLIP36.39■■■■□ 3.42
UPK3B-204ENST00000469114 CYB5RLQ6IPT4 315 aa36.37■■■■□ 3.41
UPK3B-204ENST00000469114 POLA1P09884 1462 aaPredicted RBP36.31■■■■□ 3.4
UPK3B-204ENST00000469114 FBLN2P98095 1184 aa36.26■■■■□ 3.4
UPK3B-204ENST00000469114 ARAP1Q96P48 1450 aa36.24■■■■□ 3.39
UPK3B-204ENST00000469114 RAD54L2Q9Y4B4 1467 aa36.16■■■■□ 3.38
UPK3B-204ENST00000469114 TRHP20396 242 aaPredicted RBP36.13■■■■□ 3.37
UPK3B-204ENST00000469114 SOGA1O94964 1423 aa36.13■■■■□ 3.37
UPK3B-204ENST00000469114 TDRD9Q8NDG6 1382 aaKnown RBP36.1■■■■□ 3.37
UPK3B-204ENST00000469114 WDR97A6NE52 1622 aa36.08■■■■□ 3.37
UPK3B-204ENST00000469114 SNAPC4Q5SXM2 1469 aa36.03■■■■□ 3.36
UPK3B-204ENST00000469114 FGD5Q6ZNL6 1462 aa36.01■■■■□ 3.36
UPK3B-204ENST00000469114 CLASP1Q7Z460 1538 aa35.98■■■■□ 3.35
UPK3B-204ENST00000469114 MAGI1Q96QZ7 1491 aaPredicted RBP35.95■■■■□ 3.35
UPK3B-204ENST00000469114 SYNJ1O43426 1573 aa35.94■■■■□ 3.34
UPK3B-204ENST00000469114 CHMP7Q8WUX9 453 aaPredicted RBP35.94■■■■□ 3.34
UPK3B-204ENST00000469114 CUX1P39880 1505 aa35.89■■■■□ 3.34
UPK3B-204ENST00000469114 GRIN2BQ13224 1484 aa35.89■■■■□ 3.34
UPK3B-204ENST00000469114 SYNJ2O15056 1496 aa35.82■■■■□ 3.32
UPK3B-204ENST00000469114 PBRM1Q86U86 1689 aa35.72■■■■□ 3.31
UPK3B-204ENST00000469114 GAPVD1Q14C86 1478 aa35.69■■■■□ 3.3
UPK3B-204ENST00000469114 ABCA10Q8WWZ4 1543 aa35.59■■■■□ 3.29
UPK3B-204ENST00000469114 ABCA5Q8WWZ7 1642 aa35.58■■■■□ 3.29
UPK3B-204ENST00000469114 AEBP2Q6ZN18 517 aaPredicted RBP35.44■■■■□ 3.26
UPK3B-204ENST00000469114 GRIN2AQ12879 1464 aa35.41■■■■□ 3.26
UPK3B-204ENST00000469114 WRNQ14191 1432 aaPredicted RBP eCLIP35.36■■■■□ 3.25
UPK3B-204ENST00000469114 ADAMTS12P58397 1594 aa35.34■■■■□ 3.25
UPK3B-204ENST00000469114 ERCC6L2Q5T890 1561 aa35.34■■■■□ 3.25
UPK3B-204ENST00000469114 NUP160Q12769 1436 aa35.31■■■■□ 3.24
UPK3B-204ENST00000469114 CEP170Q5SW79 1584 aa35.3■■■■□ 3.24
UPK3B-204ENST00000469114 BIVM-ERCC5R4GMW8 1640 aa35.24■■■■□ 3.23
UPK3B-204ENST00000469114 FHAD1B1AJZ9 1412 aa35.23■■■■□ 3.23
UPK3B-204ENST00000469114 TOP2BQ02880 1626 aa35.22■■■■□ 3.23
UPK3B-204ENST00000469114 SHROOM2Q13796 1616 aa35.22■■■■□ 3.23
UPK3B-204ENST00000469114 SUPT5HO00267 1087 aaKnown RBP35.22■■■■□ 3.23
UPK3B-204ENST00000469114 ERICH3Q5RHP9 1530 aa35.15■■■■□ 3.22
UPK3B-204ENST00000469114 PRG4Q92954 1404 aaPredicted RBP35■■■■□ 3.19
UPK3B-204ENST00000469114 KIF13AQ9H1H9 1805 aa34.99■■■■□ 3.19
UPK3B-204ENST00000469114 JPH4Q96JJ6 628 aa34.93■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms