RNA–Protein interactions for RNA: ENST00000469006.1

SNED1-209, Transcript of sushi, nidogen and EGF like domains 1, humanhuman

TSL 5

Gene SNED1, Length 963 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1-209ENST00000469006 NISCHQ9Y2I1 1504 aa36.85■■■■□ 3.49
SNED1-209ENST00000469006 ABCC9O60706 1549 aa33.41■■■□□ 2.94
SNED1-209ENST00000469006 CCDC180Q9P1Z9 1646 aa33.2■■■□□ 2.9
SNED1-209ENST00000469006 RB1CC1Q8TDY2 1594 aa31.69■■■□□ 2.66
SNED1-209ENST00000469006 DNAJC5BQ9UF47 199 aa31.5■■■□□ 2.63
SNED1-209ENST00000469006 NACADO15069 1562 aa31.41■■■□□ 2.62
SNED1-209ENST00000469006 DCAF8L2P0C7V8 631 aa31.15■■■□□ 2.58
SNED1-209ENST00000469006 PABPN1Q86U42 306 aaKnown RBP eCLIP31.03■■■□□ 2.56
SNED1-209ENST00000469006 UNC13AQ9UPW8 1703 aa30.98■■■□□ 2.55
SNED1-209ENST00000469006 MYO15BQ96JP2 1530 aa30.89■■■□□ 2.54
SNED1-209ENST00000469006 BICRAQ9NZM4 1560 aa30.79■■■□□ 2.52
SNED1-209ENST00000469006 ZCCHC6Q5VYS8 1495 aaKnown RBP30.51■■■□□ 2.48
SNED1-209ENST00000469006 DCAF1Q9Y4B6 1507 aa30.42■■■□□ 2.46
SNED1-209ENST00000469006 SHROOM4Q9ULL8 1493 aa30.35■■■□□ 2.45
SNED1-209ENST00000469006 SCRIBQ14160 1630 aa30.25■■■□□ 2.43
SNED1-209ENST00000469006 CC2D2AQ9P2K1 1620 aa30.17■■■□□ 2.42
SNED1-209ENST00000469006 CECR2Q9BXF3 1484 aa30.12■■■□□ 2.41
SNED1-209ENST00000469006 EIF4G1Q04637 1599 aaKnown RBP30.05■■■□□ 2.4
SNED1-209ENST00000469006 DNAJC5Q9H3Z4 198 aa29.08■■■□□ 2.25
SNED1-209ENST00000469006 NCAPD3P42695 1498 aa28.98■■■□□ 2.23
SNED1-209ENST00000469006 CUX2O14529 1486 aa28.89■■■□□ 2.22
SNED1-209ENST00000469006 ATAD2BQ9ULI0 1458 aa28.88■■■□□ 2.21
SNED1-209ENST00000469006 ERCC6Q03468 1493 aa28.86■■■□□ 2.21
SNED1-209ENST00000469006 SMARCA4P51532 1647 aa28.81■■■□□ 2.2
SNED1-209ENST00000469006 SMARCA2P51531 1590 aa28.79■■■□□ 2.2
SNED1-209ENST00000469006 HMGXB3Q12766 1538 aa28.79■■■□□ 2.2
SNED1-209ENST00000469006 NESP48681 1621 aa28.63■■■□□ 2.17
SNED1-209ENST00000469006 BAZ1AQ9NRL2 1556 aaPredicted RBP28.62■■■□□ 2.17
SNED1-209ENST00000469006 BAZ1BQ9UIG0 1483 aaKnown RBP28.6■■■□□ 2.17
SNED1-209ENST00000469006 PEG3Q9GZU2 1588 aa28.53■■■□□ 2.16
SNED1-209ENST00000469006 THOC2Q8NI27 1593 aaKnown RBP28.41■■■□□ 2.14
SNED1-209ENST00000469006 MROH2BQ7Z745 1585 aa28.4■■■□□ 2.14
SNED1-209ENST00000469006 LAMC3Q9Y6N6 1575 aa28.39■■■□□ 2.14
SNED1-209ENST00000469006 KIF21AQ7Z4S6 1674 aa28.27■■■□□ 2.12
SNED1-209ENST00000469006 PDS5BQ9NTI5 1447 aa28.22■■■□□ 2.11
SNED1-209ENST00000469006 CADPSQ9ULU8 1353 aa28.09■■■□□ 2.09
SNED1-209ENST00000469006 WIZO95785 1651 aa28.05■■■□□ 2.08
SNED1-209ENST00000469006 MRC2Q9UBG0 1479 aa28.02■■■□□ 2.08
SNED1-209ENST00000469006 WDR62O43379 1518 aa27.97■■■□□ 2.07
SNED1-209ENST00000469006 CEP164Q9UPV0 1460 aa27.86■■■□□ 2.05
SNED1-209ENST00000469006 FANCD2Q9BXW9 1451 aa27.8■■■□□ 2.04
SNED1-209ENST00000469006 TRIM41Q8WV44 630 aa27.74■■■□□ 2.03
SNED1-209ENST00000469006 CFTRP13569 1480 aa27.74■■■□□ 2.03
SNED1-209ENST00000469006 RSF1Q96T23 1441 aaPredicted RBP27.7■■■□□ 2.03
SNED1-209ENST00000469006 TOP2AP11388 1531 aaKnown RBP27.69■■■□□ 2.02
SNED1-209ENST00000469006 URB2Q14146 1524 aaKnown RBP27.59■■■□□ 2.01
SNED1-209ENST00000469006 OSCARQ8IYS5 282 aa27.47■■□□□ 1.99
SNED1-209ENST00000469006 PRDM2Q13029 1718 aa27.47■■□□□ 1.99
SNED1-209ENST00000469006 CCDC88BA6NC98 1476 aa27.35■■□□□ 1.97
SNED1-209ENST00000469006 IFT140Q96RY7 1462 aa27.3■■□□□ 1.96
SNED1-209ENST00000469006 ZNF608Q9ULD9 1512 aaPredicted RBP27.29■■□□□ 1.96
SNED1-209ENST00000469006 TOPBP1Q92547 1522 aa27.25■■□□□ 1.95
SNED1-209ENST00000469006 RIMBP3CA6NJZ7 1639 aa27.21■■□□□ 1.95
SNED1-209ENST00000469006 RIMBP3BA6NNM3 1639 aa27.21■■□□□ 1.95
SNED1-209ENST00000469006 RIMBP3Q9UFD9 1639 aa27.21■■□□□ 1.95
SNED1-209ENST00000469006 EIF4G3O43432 1585 aaKnown RBP27.15■■□□□ 1.94
SNED1-209ENST00000469006 DNMBPQ6XZF7 1577 aa27.14■■□□□ 1.94
SNED1-209ENST00000469006 ABCC8Q09428 1581 aa27.14■■□□□ 1.93
SNED1-209ENST00000469006 ARHGEF11O15085 1522 aa27.1■■□□□ 1.93
SNED1-209ENST00000469006 TARBP1Q13395 1621 aaKnown RBP27.03■■□□□ 1.92
SNED1-209ENST00000469006 AQRO60306 1485 aaKnown RBP eCLIP27■■□□□ 1.91
SNED1-209ENST00000469006 CHD1O14646 1710 aa26.98■■□□□ 1.91
SNED1-209ENST00000469006 POLA1P09884 1462 aaPredicted RBP26.96■■□□□ 1.91
SNED1-209ENST00000469006 RAD54L2Q9Y4B4 1467 aa26.86■■□□□ 1.89
SNED1-209ENST00000469006 CYB5RLQ6IPT4 315 aa26.85■■□□□ 1.89
SNED1-209ENST00000469006 FBLN2P98095 1184 aa26.84■■□□□ 1.89
SNED1-209ENST00000469006 ARAP1Q96P48 1450 aa26.82■■□□□ 1.88
SNED1-209ENST00000469006 SOGA1O94964 1423 aa26.81■■□□□ 1.88
SNED1-209ENST00000469006 TDRD9Q8NDG6 1382 aaKnown RBP26.79■■□□□ 1.88
SNED1-209ENST00000469006 FGD5Q6ZNL6 1462 aa26.76■■□□□ 1.87
SNED1-209ENST00000469006 SNAPC4Q5SXM2 1469 aa26.74■■□□□ 1.87
SNED1-209ENST00000469006 WDR97A6NE52 1622 aa26.74■■□□□ 1.87
SNED1-209ENST00000469006 CUX1P39880 1505 aa26.7■■□□□ 1.87
SNED1-209ENST00000469006 CLASP1Q7Z460 1538 aa26.67■■□□□ 1.86
SNED1-209ENST00000469006 MAGI1Q96QZ7 1491 aaPredicted RBP26.65■■□□□ 1.86
SNED1-209ENST00000469006 TRHP20396 242 aaPredicted RBP26.64■■□□□ 1.86
SNED1-209ENST00000469006 SYNJ1O43426 1573 aa26.63■■□□□ 1.85
SNED1-209ENST00000469006 GRIN2BQ13224 1484 aa26.62■■□□□ 1.85
SNED1-209ENST00000469006 CHMP7Q8WUX9 453 aaPredicted RBP26.6■■□□□ 1.85
SNED1-209ENST00000469006 SYNJ2O15056 1496 aa26.56■■□□□ 1.84
SNED1-209ENST00000469006 PBRM1Q86U86 1689 aa26.52■■□□□ 1.84
SNED1-209ENST00000469006 GAPVD1Q14C86 1478 aa26.49■■□□□ 1.83
SNED1-209ENST00000469006 ABCA5Q8WWZ7 1642 aa26.44■■□□□ 1.82
SNED1-209ENST00000469006 ABCA10Q8WWZ4 1543 aa26.44■■□□□ 1.82
SNED1-209ENST00000469006 GRIN2AQ12879 1464 aa26.29■■□□□ 1.8
SNED1-209ENST00000469006 SUPT5HO00267 1087 aaKnown RBP26.28■■□□□ 1.8
SNED1-209ENST00000469006 WRNQ14191 1432 aaPredicted RBP eCLIP26.27■■□□□ 1.8
SNED1-209ENST00000469006 ADAMTS12P58397 1594 aa26.27■■□□□ 1.8
SNED1-209ENST00000469006 ERCC6L2Q5T890 1561 aa26.24■■□□□ 1.79
SNED1-209ENST00000469006 CEP170Q5SW79 1584 aa26.22■■□□□ 1.79
SNED1-209ENST00000469006 BIVM-ERCC5R4GMW8 1640 aa26.21■■□□□ 1.79
SNED1-209ENST00000469006 TOP2BQ02880 1626 aa26.21■■□□□ 1.79
SNED1-209ENST00000469006 NUP160Q12769 1436 aa26.2■■□□□ 1.78
SNED1-209ENST00000469006 FHAD1B1AJZ9 1412 aa26.14■■□□□ 1.78
SNED1-209ENST00000469006 SHROOM2Q13796 1616 aa26.13■■□□□ 1.77
SNED1-209ENST00000469006 ERICH3Q5RHP9 1530 aa26.1■■□□□ 1.77
SNED1-209ENST00000469006 AEBP2Q6ZN18 517 aaPredicted RBP26.03■■□□□ 1.76
SNED1-209ENST00000469006 PRG4Q92954 1404 aaPredicted RBP25.96■■□□□ 1.75
SNED1-209ENST00000469006 RUSC2Q8N2Y8 1516 aa25.91■■□□□ 1.74
SNED1-209ENST00000469006 KIF13AQ9H1H9 1805 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms