RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 NISCHQ9Y2I1 1504 aa41.32■■■■■ 4.2
CCDC28B-204ENST00000469003 CCDC180Q9P1Z9 1646 aa37.03■■■■□ 3.52
CCDC28B-204ENST00000469003 ABCC9O60706 1549 aa36.77■■■■□ 3.48
CCDC28B-204ENST00000469003 RB1CC1Q8TDY2 1594 aa35.13■■■■□ 3.21
CCDC28B-204ENST00000469003 NACADO15069 1562 aa34.95■■■■□ 3.18
CCDC28B-204ENST00000469003 DNAJC5BQ9UF47 199 aa34.84■■■■□ 3.17
CCDC28B-204ENST00000469003 DCAF8L2P0C7V8 631 aa34.72■■■■□ 3.15
CCDC28B-204ENST00000469003 MYO15BQ96JP2 1530 aa34.55■■■■□ 3.12
CCDC28B-204ENST00000469003 UNC13AQ9UPW8 1703 aa34.34■■■■□ 3.09
CCDC28B-204ENST00000469003 ZCCHC6Q5VYS8 1495 aaKnown RBP34.29■■■■□ 3.08
CCDC28B-204ENST00000469003 PABPN1Q86U42 306 aaKnown RBP eCLIP34.23■■■■□ 3.07
CCDC28B-204ENST00000469003 DCAF1Q9Y4B6 1507 aa34.17■■■■□ 3.06
CCDC28B-204ENST00000469003 BICRAQ9NZM4 1560 aa34.09■■■■□ 3.05
CCDC28B-204ENST00000469003 SCRIBQ14160 1630 aa33.71■■■□□ 2.99
CCDC28B-204ENST00000469003 SHROOM4Q9ULL8 1493 aa33.69■■■□□ 2.98
CCDC28B-204ENST00000469003 CC2D2AQ9P2K1 1620 aa33.25■■■□□ 2.91
CCDC28B-204ENST00000469003 EIF4G1Q04637 1599 aaKnown RBP33.23■■■□□ 2.91
CCDC28B-204ENST00000469003 CECR2Q9BXF3 1484 aa33.12■■■□□ 2.89
CCDC28B-204ENST00000469003 DNAJC5Q9H3Z4 198 aa32.44■■■□□ 2.78
CCDC28B-204ENST00000469003 NCAPD3P42695 1498 aa32.24■■■□□ 2.75
CCDC28B-204ENST00000469003 SMARCA4P51532 1647 aa32.19■■■□□ 2.74
CCDC28B-204ENST00000469003 ATAD2BQ9ULI0 1458 aa32.16■■■□□ 2.74
CCDC28B-204ENST00000469003 SMARCA2P51531 1590 aa32.11■■■□□ 2.73
CCDC28B-204ENST00000469003 BAZ1AQ9NRL2 1556 aaPredicted RBP32.07■■■□□ 2.72
CCDC28B-204ENST00000469003 HMGXB3Q12766 1538 aa32.04■■■□□ 2.72
CCDC28B-204ENST00000469003 PEG3Q9GZU2 1588 aa31.9■■■□□ 2.7
CCDC28B-204ENST00000469003 BAZ1BQ9UIG0 1483 aaKnown RBP31.86■■■□□ 2.69
CCDC28B-204ENST00000469003 MROH2BQ7Z745 1585 aa31.82■■■□□ 2.68
CCDC28B-204ENST00000469003 CUX2O14529 1486 aa31.8■■■□□ 2.68
CCDC28B-204ENST00000469003 ERCC6Q03468 1493 aa31.74■■■□□ 2.67
CCDC28B-204ENST00000469003 NESP48681 1621 aa31.64■■■□□ 2.66
CCDC28B-204ENST00000469003 LAMC3Q9Y6N6 1575 aa31.5■■■□□ 2.63
CCDC28B-204ENST00000469003 WIZO95785 1651 aa31.46■■■□□ 2.63
CCDC28B-204ENST00000469003 THOC2Q8NI27 1593 aaKnown RBP31.32■■■□□ 2.6
CCDC28B-204ENST00000469003 PDS5BQ9NTI5 1447 aa31.3■■■□□ 2.6
CCDC28B-204ENST00000469003 KIF21AQ7Z4S6 1674 aa31.27■■■□□ 2.6
CCDC28B-204ENST00000469003 CADPSQ9ULU8 1353 aa31.27■■■□□ 2.6
CCDC28B-204ENST00000469003 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
CCDC28B-204ENST00000469003 TOP2AP11388 1531 aaKnown RBP31.09■■■□□ 2.57
CCDC28B-204ENST00000469003 MRC2Q9UBG0 1479 aa31.01■■■□□ 2.56
CCDC28B-204ENST00000469003 CFTRP13569 1480 aa30.95■■■□□ 2.55
CCDC28B-204ENST00000469003 WDR62O43379 1518 aa30.94■■■□□ 2.54
CCDC28B-204ENST00000469003 CEP164Q9UPV0 1460 aa30.93■■■□□ 2.54
CCDC28B-204ENST00000469003 FANCD2Q9BXW9 1451 aa30.9■■■□□ 2.54
CCDC28B-204ENST00000469003 TRIM41Q8WV44 630 aa30.86■■■□□ 2.53
CCDC28B-204ENST00000469003 CCDC88BA6NC98 1476 aa30.71■■■□□ 2.51
CCDC28B-204ENST00000469003 PRDM2Q13029 1718 aa30.71■■■□□ 2.51
CCDC28B-204ENST00000469003 URB2Q14146 1524 aaKnown RBP30.64■■■□□ 2.5
CCDC28B-204ENST00000469003 TOPBP1Q92547 1522 aa30.35■■■□□ 2.45
CCDC28B-204ENST00000469003 ABCC8Q09428 1581 aa30.32■■■□□ 2.44
CCDC28B-204ENST00000469003 IFT140Q96RY7 1462 aa30.31■■■□□ 2.44
CCDC28B-204ENST00000469003 OSCARQ8IYS5 282 aa30.28■■■□□ 2.44
CCDC28B-204ENST00000469003 DNMBPQ6XZF7 1577 aa30.27■■■□□ 2.44
CCDC28B-204ENST00000469003 ZNF608Q9ULD9 1512 aaPredicted RBP30.22■■■□□ 2.43
CCDC28B-204ENST00000469003 EIF4G3O43432 1585 aaKnown RBP30.08■■■□□ 2.41
CCDC28B-204ENST00000469003 TARBP1Q13395 1621 aaKnown RBP30.07■■■□□ 2.4
CCDC28B-204ENST00000469003 POLA1P09884 1462 aaPredicted RBP30.05■■■□□ 2.4
CCDC28B-204ENST00000469003 AQRO60306 1485 aaKnown RBP eCLIP29.96■■■□□ 2.39
CCDC28B-204ENST00000469003 SUPT5HO00267 1087 aaKnown RBP29.95■■■□□ 2.39
CCDC28B-204ENST00000469003 RIMBP3CA6NJZ7 1639 aa29.93■■■□□ 2.38
CCDC28B-204ENST00000469003 RIMBP3BA6NNM3 1639 aa29.93■■■□□ 2.38
CCDC28B-204ENST00000469003 RIMBP3Q9UFD9 1639 aa29.93■■■□□ 2.38
CCDC28B-204ENST00000469003 RAD54L2Q9Y4B4 1467 aa29.92■■■□□ 2.38
CCDC28B-204ENST00000469003 SOGA1O94964 1423 aa29.91■■■□□ 2.38
CCDC28B-204ENST00000469003 CUX1P39880 1505 aa29.9■■■□□ 2.38
CCDC28B-204ENST00000469003 FGD5Q6ZNL6 1462 aa29.88■■■□□ 2.37
CCDC28B-204ENST00000469003 CHD1O14646 1710 aa29.83■■■□□ 2.37
CCDC28B-204ENST00000469003 WDR97A6NE52 1622 aa29.82■■■□□ 2.36
CCDC28B-204ENST00000469003 TDRD9Q8NDG6 1382 aaKnown RBP29.8■■■□□ 2.36
CCDC28B-204ENST00000469003 ARHGEF11O15085 1522 aa29.78■■■□□ 2.36
CCDC28B-204ENST00000469003 FBLN2P98095 1184 aa29.71■■■□□ 2.35
CCDC28B-204ENST00000469003 SNAPC4Q5SXM2 1469 aa29.68■■■□□ 2.34
CCDC28B-204ENST00000469003 GRIN2BQ13224 1484 aa29.64■■■□□ 2.34
CCDC28B-204ENST00000469003 MAGI1Q96QZ7 1491 aaPredicted RBP29.63■■■□□ 2.33
CCDC28B-204ENST00000469003 CYB5RLQ6IPT4 315 aa29.63■■■□□ 2.33
CCDC28B-204ENST00000469003 ABCA10Q8WWZ4 1543 aa29.58■■■□□ 2.33
CCDC28B-204ENST00000469003 PBRM1Q86U86 1689 aa29.56■■■□□ 2.32
CCDC28B-204ENST00000469003 GAPVD1Q14C86 1478 aa29.55■■■□□ 2.32
CCDC28B-204ENST00000469003 CHMP7Q8WUX9 453 aaPredicted RBP29.54■■■□□ 2.32
CCDC28B-204ENST00000469003 TRHP20396 242 aaPredicted RBP29.53■■■□□ 2.32
CCDC28B-204ENST00000469003 SYNJ2O15056 1496 aa29.52■■■□□ 2.32
CCDC28B-204ENST00000469003 ABCA5Q8WWZ7 1642 aa29.52■■■□□ 2.32
CCDC28B-204ENST00000469003 SYNJ1O43426 1573 aa29.5■■■□□ 2.31
CCDC28B-204ENST00000469003 CLASP1Q7Z460 1538 aa29.5■■■□□ 2.31
CCDC28B-204ENST00000469003 BIVM-ERCC5R4GMW8 1640 aa29.49■■■□□ 2.31
CCDC28B-204ENST00000469003 TOP2BQ02880 1626 aa29.49■■■□□ 2.31
CCDC28B-204ENST00000469003 WRNQ14191 1432 aaPredicted RBP eCLIP29.48■■■□□ 2.31
CCDC28B-204ENST00000469003 ARAP1Q96P48 1450 aa29.45■■■□□ 2.31
CCDC28B-204ENST00000469003 ADAMTS12P58397 1594 aa29.28■■■□□ 2.28
CCDC28B-204ENST00000469003 GRIN2AQ12879 1464 aa29.26■■■□□ 2.27
CCDC28B-204ENST00000469003 ERICH3Q5RHP9 1530 aa29.21■■■□□ 2.27
CCDC28B-204ENST00000469003 FHAD1B1AJZ9 1412 aa29.2■■■□□ 2.26
CCDC28B-204ENST00000469003 NUP160Q12769 1436 aa29.16■■■□□ 2.26
CCDC28B-204ENST00000469003 CEP170Q5SW79 1584 aa29.14■■■□□ 2.26
CCDC28B-204ENST00000469003 AEBP2Q6ZN18 517 aaPredicted RBP29.12■■■□□ 2.25
CCDC28B-204ENST00000469003 SHROOM2Q13796 1616 aa29.02■■■□□ 2.24
CCDC28B-204ENST00000469003 ERCC6L2Q5T890 1561 aa29.02■■■□□ 2.24
CCDC28B-204ENST00000469003 KIF27Q86VH2 1401 aa28.9■■■□□ 2.22
CCDC28B-204ENST00000469003 RUSC2Q8N2Y8 1516 aa28.86■■■□□ 2.21
CCDC28B-204ENST00000469003 IGF1RP08069 1367 aa28.86■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 275 ms