RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 NISCHQ9Y2I1 1504 aa19.08■□□□□ 0.64
HDAC6-216ENST00000468949 AEBP2Q6ZN18 517 aaPredicted RBP18.05■□□□□ 0.48
HDAC6-216ENST00000468949 CHIC1Q5VXU3 224 aa17.85■□□□□ 0.45
HDAC6-216ENST00000468949 CCDC180Q9P1Z9 1646 aa17.13■□□□□ 0.33
HDAC6-216ENST00000468949 ABCC9O60706 1549 aa16.7■□□□□ 0.26
HDAC6-216ENST00000468949 RB1CC1Q8TDY2 1594 aa16.11■□□□□ 0.17
HDAC6-216ENST00000468949 NACADO15069 1562 aa16.05■□□□□ 0.16
HDAC6-216ENST00000468949 MYO15BQ96JP2 1530 aa15.94■□□□□ 0.14
HDAC6-216ENST00000468949 ZCCHC6Q5VYS8 1495 aaKnown RBP15.92■□□□□ 0.14
HDAC6-216ENST00000468949 DCAF1Q9Y4B6 1507 aa15.83■□□□□ 0.12
HDAC6-216ENST00000468949 DCAF8L2P0C7V8 631 aa15.8■□□□□ 0.12
HDAC6-216ENST00000468949 UNC13AQ9UPW8 1703 aa15.75■□□□□ 0.11
HDAC6-216ENST00000468949 PHF23Q9BUL5 403 aaPredicted RBP15.75■□□□□ 0.11
HDAC6-216ENST00000468949 BICRAQ9NZM4 1560 aa15.58■□□□□ 0.09
HDAC6-216ENST00000468949 SCRIBQ14160 1630 aa15.54■□□□□ 0.08
HDAC6-216ENST00000468949 SHROOM4Q9ULL8 1493 aa15.52■□□□□ 0.07
HDAC6-216ENST00000468949 PABPN1Q86U42 306 aaKnown RBP eCLIP15.48■□□□□ 0.07
HDAC6-216ENST00000468949 DNAJC5BQ9UF47 199 aa15.29■□□□□ 0.04
HDAC6-216ENST00000468949 SENP3Q9H4L4 574 aaPredicted RBP15.22■□□□□ 0.03
HDAC6-216ENST00000468949 EIF4G1Q04637 1599 aaKnown RBP15.19■□□□□ 0.02
HDAC6-216ENST00000468949 CC2D2AQ9P2K1 1620 aa15.15■□□□□ 0.02
HDAC6-216ENST00000468949 CECR2Q9BXF3 1484 aa15.03■□□□□ -0
HDAC6-216ENST00000468949 SMARCA4P51532 1647 aa14.88□□□□□ -0.03
HDAC6-216ENST00000468949 BAZ1AQ9NRL2 1556 aaPredicted RBP14.84□□□□□ -0.03
HDAC6-216ENST00000468949 SMARCA2P51531 1590 aa14.8□□□□□ -0.04
HDAC6-216ENST00000468949 HMGXB3Q12766 1538 aa14.76□□□□□ -0.05
HDAC6-216ENST00000468949 NCAPD3P42695 1498 aa14.76□□□□□ -0.05
HDAC6-216ENST00000468949 ATAD2BQ9ULI0 1458 aa14.76□□□□□ -0.05
HDAC6-216ENST00000468949 PEG3Q9GZU2 1588 aa14.73□□□□□ -0.05
HDAC6-216ENST00000468949 MROH2BQ7Z745 1585 aa14.68□□□□□ -0.06
HDAC6-216ENST00000468949 BAZ1BQ9UIG0 1483 aaKnown RBP14.66□□□□□ -0.06
HDAC6-216ENST00000468949 PLPPR3Q6T4P5 718 aa14.59□□□□□ -0.07
HDAC6-216ENST00000468949 RSF1Q96T23 1441 aaPredicted RBP14.54□□□□□ -0.08
HDAC6-216ENST00000468949 WIZO95785 1651 aa14.54□□□□□ -0.08
HDAC6-216ENST00000468949 SUPT5HO00267 1087 aaKnown RBP14.49□□□□□ -0.09
HDAC6-216ENST00000468949 LAMC3Q9Y6N6 1575 aa14.45□□□□□ -0.1
HDAC6-216ENST00000468949 ERCC6Q03468 1493 aa14.44□□□□□ -0.1
HDAC6-216ENST00000468949 TOP2AP11388 1531 aaKnown RBP14.43□□□□□ -0.1
HDAC6-216ENST00000468949 NESP48681 1621 aa14.41□□□□□ -0.1
HDAC6-216ENST00000468949 CUX2O14529 1486 aa14.35□□□□□ -0.11
HDAC6-216ENST00000468949 THOC2Q8NI27 1593 aaKnown RBP14.33□□□□□ -0.12
HDAC6-216ENST00000468949 KIF21AQ7Z4S6 1674 aa14.33□□□□□ -0.12
HDAC6-216ENST00000468949 PDS5BQ9NTI5 1447 aa14.3□□□□□ -0.12
HDAC6-216ENST00000468949 CADPSQ9ULU8 1353 aa14.29□□□□□ -0.12
HDAC6-216ENST00000468949 PRDM2Q13029 1718 aa14.24□□□□□ -0.13
HDAC6-216ENST00000468949 CFTRP13569 1480 aa14.23□□□□□ -0.13
HDAC6-216ENST00000468949 CEP164Q9UPV0 1460 aa14.2□□□□□ -0.14
HDAC6-216ENST00000468949 MRC2Q9UBG0 1479 aa14.19□□□□□ -0.14
HDAC6-216ENST00000468949 FANCD2Q9BXW9 1451 aa14.18□□□□□ -0.14
HDAC6-216ENST00000468949 WDR62O43379 1518 aa14.17□□□□□ -0.14
HDAC6-216ENST00000468949 CCDC88BA6NC98 1476 aa14.17□□□□□ -0.14
HDAC6-216ENST00000468949 FOXD1Q16676 465 aa14.14□□□□□ -0.15
HDAC6-216ENST00000468949 URB2Q14146 1524 aaKnown RBP14.05□□□□□ -0.16
HDAC6-216ENST00000468949 DNMBPQ6XZF7 1577 aa13.96□□□□□ -0.17
HDAC6-216ENST00000468949 ABCC8Q09428 1581 aa13.95□□□□□ -0.18
HDAC6-216ENST00000468949 TOPBP1Q92547 1522 aa13.95□□□□□ -0.18
HDAC6-216ENST00000468949 IFT140Q96RY7 1462 aa13.89□□□□□ -0.19
HDAC6-216ENST00000468949 DNAJC5Q9H3Z4 198 aa13.89□□□□□ -0.19
HDAC6-216ENST00000468949 ADRA2BP18089 450 aa13.85□□□□□ -0.19
HDAC6-216ENST00000468949 EIF4G3O43432 1585 aaKnown RBP13.83□□□□□ -0.19
HDAC6-216ENST00000468949 PPP6R1Q9UPN7 881 aa13.83□□□□□ -0.2
HDAC6-216ENST00000468949 TARBP1Q13395 1621 aaKnown RBP13.82□□□□□ -0.2
HDAC6-216ENST00000468949 POLA1P09884 1462 aaPredicted RBP13.82□□□□□ -0.2
HDAC6-216ENST00000468949 CUX1P39880 1505 aa13.8□□□□□ -0.2
HDAC6-216ENST00000468949 ZNF608Q9ULD9 1512 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-216ENST00000468949 FGD5Q6ZNL6 1462 aa13.78□□□□□ -0.2
HDAC6-216ENST00000468949 WDR97A6NE52 1622 aa13.78□□□□□ -0.2
HDAC6-216ENST00000468949 WRNQ14191 1432 aaPredicted RBP eCLIP13.76□□□□□ -0.21
HDAC6-216ENST00000468949 BIVM-ERCC5R4GMW8 1640 aa13.72□□□□□ -0.21
HDAC6-216ENST00000468949 RAD54L2Q9Y4B4 1467 aa13.71□□□□□ -0.21
HDAC6-216ENST00000468949 SOGA1O94964 1423 aa13.7□□□□□ -0.22
HDAC6-216ENST00000468949 TOP2BQ02880 1626 aa13.69□□□□□ -0.22
HDAC6-216ENST00000468949 SYNJ1O43426 1573 aa13.67□□□□□ -0.22
HDAC6-216ENST00000468949 TRIM41Q8WV44 630 aa13.67□□□□□ -0.22
HDAC6-216ENST00000468949 CHD1O14646 1710 aa13.67□□□□□ -0.22
HDAC6-216ENST00000468949 AQRO60306 1485 aaKnown RBP eCLIP13.67□□□□□ -0.221e-21■■■■■ 39.1
HDAC6-216ENST00000468949 ABCA5Q8WWZ7 1642 aa13.66□□□□□ -0.22
HDAC6-216ENST00000468949 PBRM1Q86U86 1689 aa13.66□□□□□ -0.22
HDAC6-216ENST00000468949 ABCA10Q8WWZ4 1543 aa13.64□□□□□ -0.23
HDAC6-216ENST00000468949 SNAPC4Q5SXM2 1469 aa13.62□□□□□ -0.23
HDAC6-216ENST00000468949 MAGI1Q96QZ7 1491 aaPredicted RBP13.62□□□□□ -0.23
HDAC6-216ENST00000468949 GRIN2BQ13224 1484 aa13.61□□□□□ -0.23
HDAC6-216ENST00000468949 TDRD9Q8NDG6 1382 aaKnown RBP13.61□□□□□ -0.23
HDAC6-216ENST00000468949 OSCARQ8IYS5 282 aa13.59□□□□□ -0.23
HDAC6-216ENST00000468949 GAPVD1Q14C86 1478 aa13.58□□□□□ -0.24
HDAC6-216ENST00000468949 SYNJ2O15056 1496 aa13.55□□□□□ -0.24
HDAC6-216ENST00000468949 ADAMTS12P58397 1594 aa13.54□□□□□ -0.24
HDAC6-216ENST00000468949 RIMBP3CA6NJZ7 1639 aa13.52□□□□□ -0.25
HDAC6-216ENST00000468949 RIMBP3BA6NNM3 1639 aa13.52□□□□□ -0.25
HDAC6-216ENST00000468949 RIMBP3Q9UFD9 1639 aa13.52□□□□□ -0.25
HDAC6-216ENST00000468949 ARHGEF11O15085 1522 aa13.5□□□□□ -0.25
HDAC6-216ENST00000468949 ERICH3Q5RHP9 1530 aa13.5□□□□□ -0.25
HDAC6-216ENST00000468949 CLASP1Q7Z460 1538 aa13.5□□□□□ -0.25
HDAC6-216ENST00000468949 FBLN2P98095 1184 aa13.48□□□□□ -0.25
HDAC6-216ENST00000468949 KIF27Q86VH2 1401 aa13.47□□□□□ -0.25
HDAC6-216ENST00000468949 GRIN2AQ12879 1464 aa13.45□□□□□ -0.26
HDAC6-216ENST00000468949 CHMP7Q8WUX9 453 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-216ENST00000468949 FHAD1B1AJZ9 1412 aa13.43□□□□□ -0.26
HDAC6-216ENST00000468949 EEA1Q15075 1411 aa13.43□□□□□ -0.26
HDAC6-216ENST00000468949 CUL7Q14999 1698 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms