RNA–Protein interactions for RNA: ENST00000468876.1

ARHGEF39-202, Transcript of Rho guanine nucleotide exchange factor 39, humanhuman

TSL 2

Gene ARHGEF39, Length 739 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF39-202ENST00000468876 NISCHQ9Y2I1 1504 aa29.51■■■□□ 2.32
ARHGEF39-202ENST00000468876 ABCC9O60706 1549 aa28.19■■■□□ 2.1
ARHGEF39-202ENST00000468876 DNAJC5BQ9UF47 199 aa27.43■■□□□ 1.98
ARHGEF39-202ENST00000468876 CCDC180Q9P1Z9 1646 aa26.91■■□□□ 1.9
ARHGEF39-202ENST00000468876 RB1CC1Q8TDY2 1594 aa26.25■■□□□ 1.79
ARHGEF39-202ENST00000468876 PABPN1Q86U42 306 aaKnown RBP eCLIP26.12■■□□□ 1.77
ARHGEF39-202ENST00000468876 DNAJC5Q9H3Z4 198 aa26.03■■□□□ 1.76
ARHGEF39-202ENST00000468876 NACADO15069 1562 aa25.77■■□□□ 1.72
ARHGEF39-202ENST00000468876 DCAF8L2P0C7V8 631 aa25.67■■□□□ 1.7
ARHGEF39-202ENST00000468876 UNC13AQ9UPW8 1703 aa25.54■■□□□ 1.68
ARHGEF39-202ENST00000468876 CECR2Q9BXF3 1484 aa25.5■■□□□ 1.67
ARHGEF39-202ENST00000468876 BICRAQ9NZM4 1560 aa25.47■■□□□ 1.67
ARHGEF39-202ENST00000468876 CC2D2AQ9P2K1 1620 aa25.33■■□□□ 1.65
ARHGEF39-202ENST00000468876 SHROOM4Q9ULL8 1493 aa25■■□□□ 1.59
ARHGEF39-202ENST00000468876 EIF4G1Q04637 1599 aaKnown RBP24.98■■□□□ 1.59
ARHGEF39-202ENST00000468876 MYO15BQ96JP2 1530 aa24.96■■□□□ 1.59
ARHGEF39-202ENST00000468876 CUX2O14529 1486 aa24.7■■□□□ 1.54
ARHGEF39-202ENST00000468876 SCRIBQ14160 1630 aa24.57■■□□□ 1.52
ARHGEF39-202ENST00000468876 TRIM41Q8WV44 630 aa24.57■■□□□ 1.52
ARHGEF39-202ENST00000468876 ERCC6Q03468 1493 aa24.46■■□□□ 1.51
ARHGEF39-202ENST00000468876 ZCCHC6Q5VYS8 1495 aaKnown RBP24.28■■□□□ 1.48
ARHGEF39-202ENST00000468876 DCAF1Q9Y4B6 1507 aa24.24■■□□□ 1.47
ARHGEF39-202ENST00000468876 NESP48681 1621 aa23.86■■□□□ 1.41
ARHGEF39-202ENST00000468876 NCAPD3P42695 1498 aa23.81■■□□□ 1.4
ARHGEF39-202ENST00000468876 THOC2Q8NI27 1593 aaKnown RBP23.77■■□□□ 1.4
ARHGEF39-202ENST00000468876 SMARCA2P51531 1590 aa23.65■■□□□ 1.38
ARHGEF39-202ENST00000468876 ATAD2BQ9ULI0 1458 aa23.6■■□□□ 1.37
ARHGEF39-202ENST00000468876 HMGXB3Q12766 1538 aa23.51■■□□□ 1.35
ARHGEF39-202ENST00000468876 OSCARQ8IYS5 282 aa23.47■■□□□ 1.35
ARHGEF39-202ENST00000468876 KIF21AQ7Z4S6 1674 aa23.44■■□□□ 1.34
ARHGEF39-202ENST00000468876 LAMC3Q9Y6N6 1575 aa23.44■■□□□ 1.34
ARHGEF39-202ENST00000468876 BAZ1AQ9NRL2 1556 aaPredicted RBP23.43■■□□□ 1.34
ARHGEF39-202ENST00000468876 PDS5BQ9NTI5 1447 aa23.42■■□□□ 1.34
ARHGEF39-202ENST00000468876 AEBP2Q6ZN18 517 aaPredicted RBP23.42■■□□□ 1.34
ARHGEF39-202ENST00000468876 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
ARHGEF39-202ENST00000468876 MRC2Q9UBG0 1479 aa23.28■■□□□ 1.32
ARHGEF39-202ENST00000468876 SMARCA4P51532 1647 aa23.26■■□□□ 1.31
ARHGEF39-202ENST00000468876 TRHP20396 242 aaPredicted RBP23.23■■□□□ 1.31
ARHGEF39-202ENST00000468876 RIMBP3CA6NJZ7 1639 aa23.2■■□□□ 1.3
ARHGEF39-202ENST00000468876 RIMBP3BA6NNM3 1639 aa23.2■■□□□ 1.3
ARHGEF39-202ENST00000468876 RIMBP3Q9UFD9 1639 aa23.2■■□□□ 1.3
ARHGEF39-202ENST00000468876 WDR62O43379 1518 aa23.2■■□□□ 1.3
ARHGEF39-202ENST00000468876 CADPSQ9ULU8 1353 aa23.08■■□□□ 1.29
ARHGEF39-202ENST00000468876 CYB5RLQ6IPT4 315 aa23.05■■□□□ 1.28
ARHGEF39-202ENST00000468876 ARHGEF11O15085 1522 aa23.03■■□□□ 1.28
ARHGEF39-202ENST00000468876 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
ARHGEF39-202ENST00000468876 PEG3Q9GZU2 1588 aa22.97■■□□□ 1.27
ARHGEF39-202ENST00000468876 FANCD2Q9BXW9 1451 aa22.84■■□□□ 1.25
ARHGEF39-202ENST00000468876 MROH2BQ7Z745 1585 aa22.76■■□□□ 1.23
ARHGEF39-202ENST00000468876 ARAP1Q96P48 1450 aa22.73■■□□□ 1.23
ARHGEF39-202ENST00000468876 URB2Q14146 1524 aaKnown RBP22.69■■□□□ 1.22
ARHGEF39-202ENST00000468876 ZNF608Q9ULD9 1512 aaPredicted RBP22.62■■□□□ 1.21
ARHGEF39-202ENST00000468876 CFTRP13569 1480 aa22.54■■□□□ 1.2
ARHGEF39-202ENST00000468876 IFT140Q96RY7 1462 aa22.54■■□□□ 1.2
ARHGEF39-202ENST00000468876 FBLN2P98095 1184 aa22.52■■□□□ 1.2
ARHGEF39-202ENST00000468876 ILDR1Q86SU0 546 aaPredicted RBP22.51■■□□□ 1.19
ARHGEF39-202ENST00000468876 RSF1Q96T23 1441 aaPredicted RBP22.5■■□□□ 1.19
ARHGEF39-202ENST00000468876 CHD1O14646 1710 aa22.43■■□□□ 1.18
ARHGEF39-202ENST00000468876 WIZO95785 1651 aa22.41■■□□□ 1.18
ARHGEF39-202ENST00000468876 EIF4G3O43432 1585 aaKnown RBP22.4■■□□□ 1.18
ARHGEF39-202ENST00000468876 AQRO60306 1485 aaKnown RBP eCLIP22.3■■□□□ 1.16
ARHGEF39-202ENST00000468876 TOPBP1Q92547 1522 aa22.25■■□□□ 1.15
ARHGEF39-202ENST00000468876 CLASP1Q7Z460 1538 aa22.14■■□□□ 1.13
ARHGEF39-202ENST00000468876 ABCC8Q09428 1581 aa22.12■■□□□ 1.13
ARHGEF39-202ENST00000468876 PRDM2Q13029 1718 aa22.11■■□□□ 1.13
ARHGEF39-202ENST00000468876 CHMP7Q8WUX9 453 aaPredicted RBP22.11■■□□□ 1.13
ARHGEF39-202ENST00000468876 TARBP1Q13395 1621 aaKnown RBP22.08■■□□□ 1.13
ARHGEF39-202ENST00000468876 GAPVD1Q14C86 1478 aa22.08■■□□□ 1.12
ARHGEF39-202ENST00000468876 SYNJ1O43426 1573 aa22.08■■□□□ 1.12
ARHGEF39-202ENST00000468876 TOP2AP11388 1531 aaKnown RBP22.05■■□□□ 1.12
ARHGEF39-202ENST00000468876 DNMBPQ6XZF7 1577 aa22.04■■□□□ 1.12
ARHGEF39-202ENST00000468876 SNAPC4Q5SXM2 1469 aa22.03■■□□□ 1.12
ARHGEF39-202ENST00000468876 TDRD9Q8NDG6 1382 aaKnown RBP22.01■■□□□ 1.11
ARHGEF39-202ENST00000468876 KDM4FA0A1W2PPD8 638 aa21.95■■□□□ 1.1
ARHGEF39-202ENST00000468876 POLA1P09884 1462 aaPredicted RBP21.95■■□□□ 1.1
ARHGEF39-202ENST00000468876 RAD54L2Q9Y4B4 1467 aa21.94■■□□□ 1.1
ARHGEF39-202ENST00000468876 MAGI1Q96QZ7 1491 aaPredicted RBP21.88■■□□□ 1.09
ARHGEF39-202ENST00000468876 SOGA1O94964 1423 aa21.88■■□□□ 1.09
ARHGEF39-202ENST00000468876 SYNJ2O15056 1496 aa21.84■■□□□ 1.09
ARHGEF39-202ENST00000468876 CCDC88BA6NC98 1476 aa21.83■■□□□ 1.09
ARHGEF39-202ENST00000468876 GRIN2BQ13224 1484 aa21.79■■□□□ 1.08
ARHGEF39-202ENST00000468876 KIF13AQ9H1H9 1805 aa21.78■■□□□ 1.08
ARHGEF39-202ENST00000468876 ERCC6L2Q5T890 1561 aa21.75■■□□□ 1.07
ARHGEF39-202ENST00000468876 WDR97A6NE52 1622 aa21.75■■□□□ 1.07
ARHGEF39-202ENST00000468876 FAM69CQ0P6D2 419 aa21.73■■□□□ 1.07
ARHGEF39-202ENST00000468876 FGD5Q6ZNL6 1462 aa21.67■■□□□ 1.06
ARHGEF39-202ENST00000468876 KDM6BO15054 1643 aa21.64■■□□□ 1.05
ARHGEF39-202ENST00000468876 CEP170Q5SW79 1584 aa21.61■■□□□ 1.05
ARHGEF39-202ENST00000468876 ABCC10Q5T3U5 1492 aa21.59■■□□□ 1.05
ARHGEF39-202ENST00000468876 NPM1P06748 294 aaKnown RBP eCLIP21.57■■□□□ 1.04
ARHGEF39-202ENST00000468876 FBXO41Q8TF61 875 aa21.57■■□□□ 1.04
ARHGEF39-202ENST00000468876 HECW2Q9P2P5 1572 aa21.56■■□□□ 1.04
ARHGEF39-202ENST00000468876 PBRM1Q86U86 1689 aa21.56■■□□□ 1.04
ARHGEF39-202ENST00000468876 ADGRL1O94910 1474 aa21.51■■□□□ 1.03
ARHGEF39-202ENST00000468876 GRIN2AQ12879 1464 aa21.5■■□□□ 1.03
ARHGEF39-202ENST00000468876 DIP2BQ9P265 1576 aa21.47■■□□□ 1.03
ARHGEF39-202ENST00000468876 NUP160Q12769 1436 aa21.44■■□□□ 1.02
ARHGEF39-202ENST00000468876 CUX1P39880 1505 aa21.44■■□□□ 1.02
ARHGEF39-202ENST00000468876 SHROOM2Q13796 1616 aa21.42■■□□□ 1.02
ARHGEF39-202ENST00000468876 TSPOAP1O95153 1857 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms