RNA–Protein interactions for RNA: ENST00000468807.1

TTC28-204, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-204ENST00000468807 NISCHQ9Y2I1 1504 aa53.92■■■■■ 6.22
TTC28-204ENST00000468807 CCDC180Q9P1Z9 1646 aa48.24■■■■■ 5.31
TTC28-204ENST00000468807 ABCC9O60706 1549 aa47.99■■■■■ 5.27
TTC28-204ENST00000468807 RB1CC1Q8TDY2 1594 aa45.79■■■■■ 4.92
TTC28-204ENST00000468807 DCAF8L2P0C7V8 631 aa45.54■■■■■ 4.88
TTC28-204ENST00000468807 NACADO15069 1562 aa45.52■■■■■ 4.88
TTC28-204ENST00000468807 MYO15BQ96JP2 1530 aa44.92■■■■■ 4.78
TTC28-204ENST00000468807 UNC13AQ9UPW8 1703 aa44.78■■■■■ 4.76
TTC28-204ENST00000468807 PABPN1Q86U42 306 aaKnown RBP eCLIP44.76■■■■■ 4.76
TTC28-204ENST00000468807 ZCCHC6Q5VYS8 1495 aaKnown RBP44.75■■■■■ 4.75
TTC28-204ENST00000468807 DNAJC5BQ9UF47 199 aa44.64■■■■■ 4.74
TTC28-204ENST00000468807 DCAF1Q9Y4B6 1507 aa44.5■■■■■ 4.71
TTC28-204ENST00000468807 BICRAQ9NZM4 1560 aa44.39■■■■■ 4.7
TTC28-204ENST00000468807 SCRIBQ14160 1630 aa44.08■■■■■ 4.65
TTC28-204ENST00000468807 SHROOM4Q9ULL8 1493 aa43.79■■■■■ 4.6
TTC28-204ENST00000468807 CC2D2AQ9P2K1 1620 aa43.33■■■■■ 4.53
TTC28-204ENST00000468807 EIF4G1Q04637 1599 aaKnown RBP43.32■■■■■ 4.52
TTC28-204ENST00000468807 CECR2Q9BXF3 1484 aa43.17■■■■■ 4.5
TTC28-204ENST00000468807 SMARCA4P51532 1647 aa42.02■■■■■ 4.32
TTC28-204ENST00000468807 NCAPD3P42695 1498 aa41.98■■■■■ 4.31
TTC28-204ENST00000468807 ATAD2BQ9ULI0 1458 aa41.94■■■■■ 4.3
TTC28-204ENST00000468807 SMARCA2P51531 1590 aa41.86■■■■■ 4.29
TTC28-204ENST00000468807 BAZ1AQ9NRL2 1556 aaPredicted RBP41.85■■■■■ 4.29
TTC28-204ENST00000468807 HMGXB3Q12766 1538 aa41.73■■■■■ 4.27
TTC28-204ENST00000468807 BAZ1BQ9UIG0 1483 aaKnown RBP41.61■■■■■ 4.25
TTC28-204ENST00000468807 MROH2BQ7Z745 1585 aa41.57■■■■■ 4.25
TTC28-204ENST00000468807 PEG3Q9GZU2 1588 aa41.53■■■■■ 4.24
TTC28-204ENST00000468807 ERCC6Q03468 1493 aa41.45■■■■■ 4.23
TTC28-204ENST00000468807 NESP48681 1621 aa41.31■■■■■ 4.2
TTC28-204ENST00000468807 CUX2O14529 1486 aa41.15■■■■■ 4.18
TTC28-204ENST00000468807 WIZO95785 1651 aa41.13■■■■■ 4.18
TTC28-204ENST00000468807 LAMC3Q9Y6N6 1575 aa41.03■■■■■ 4.16
TTC28-204ENST00000468807 RSF1Q96T23 1441 aaPredicted RBP40.82■■■■■ 4.12
TTC28-204ENST00000468807 PDS5BQ9NTI5 1447 aa40.81■■■■■ 4.12
TTC28-204ENST00000468807 KIF21AQ7Z4S6 1674 aa40.81■■■■■ 4.12
TTC28-204ENST00000468807 THOC2Q8NI27 1593 aaKnown RBP40.78■■■■■ 4.12
TTC28-204ENST00000468807 CADPSQ9ULU8 1353 aa40.76■■■■■ 4.12
TTC28-204ENST00000468807 DNAJC5Q9H3Z4 198 aa40.73■■■■■ 4.11
TTC28-204ENST00000468807 TOP2AP11388 1531 aaKnown RBP40.6■■■■■ 4.09
TTC28-204ENST00000468807 MRC2Q9UBG0 1479 aa40.44■■■■■ 4.06
TTC28-204ENST00000468807 CEP164Q9UPV0 1460 aa40.37■■■■■ 4.05
TTC28-204ENST00000468807 CFTRP13569 1480 aa40.35■■■■■ 4.05
TTC28-204ENST00000468807 FANCD2Q9BXW9 1451 aa40.34■■■■■ 4.05
TTC28-204ENST00000468807 WDR62O43379 1518 aa40.3■■■■■ 4.04
TTC28-204ENST00000468807 CCDC88BA6NC98 1476 aa40.13■■■■■ 4.02
TTC28-204ENST00000468807 PRDM2Q13029 1718 aa40.05■■■■■ 4
TTC28-204ENST00000468807 URB2Q14146 1524 aaKnown RBP39.96■■■■□ 3.99
TTC28-204ENST00000468807 TOPBP1Q92547 1522 aa39.6■■■■□ 3.93
TTC28-204ENST00000468807 ABCC8Q09428 1581 aa39.52■■■■□ 3.92
TTC28-204ENST00000468807 IFT140Q96RY7 1462 aa39.52■■■■□ 3.92
TTC28-204ENST00000468807 DNMBPQ6XZF7 1577 aa39.49■■■■□ 3.91
TTC28-204ENST00000468807 ZNF608Q9ULD9 1512 aaPredicted RBP39.44■■■■□ 3.9
TTC28-204ENST00000468807 SUPT5HO00267 1087 aaKnown RBP39.4■■■■□ 3.9
TTC28-204ENST00000468807 OSCARQ8IYS5 282 aa39.37■■■■□ 3.89
TTC28-204ENST00000468807 EIF4G3O43432 1585 aaKnown RBP39.25■■■■□ 3.87
TTC28-204ENST00000468807 TRIM41Q8WV44 630 aa39.24■■■■□ 3.87
TTC28-204ENST00000468807 POLA1P09884 1462 aaPredicted RBP39.22■■■■□ 3.87
TTC28-204ENST00000468807 TARBP1Q13395 1621 aaKnown RBP39.21■■■■□ 3.87
TTC28-204ENST00000468807 AQRO60306 1485 aaKnown RBP eCLIP39.13■■■■□ 3.85
TTC28-204ENST00000468807 RAD54L2Q9Y4B4 1467 aa39.1■■■■□ 3.85
TTC28-204ENST00000468807 SOGA1O94964 1423 aa39.06■■■■□ 3.84
TTC28-204ENST00000468807 FGD5Q6ZNL6 1462 aa39.05■■■■□ 3.84
TTC28-204ENST00000468807 CUX1P39880 1505 aa39.04■■■■□ 3.84
TTC28-204ENST00000468807 TDRD9Q8NDG6 1382 aaKnown RBP38.95■■■■□ 3.83
TTC28-204ENST00000468807 CHD1O14646 1710 aa38.92■■■■□ 3.82
TTC28-204ENST00000468807 FBLN2P98095 1184 aa38.9■■■■□ 3.82
TTC28-204ENST00000468807 RIMBP3CA6NJZ7 1639 aa38.84■■■■□ 3.81
TTC28-204ENST00000468807 RIMBP3BA6NNM3 1639 aa38.84■■■■□ 3.81
TTC28-204ENST00000468807 RIMBP3Q9UFD9 1639 aa38.84■■■■□ 3.81
TTC28-204ENST00000468807 WDR97A6NE52 1622 aa38.81■■■■□ 3.8
TTC28-204ENST00000468807 SNAPC4Q5SXM2 1469 aa38.76■■■■□ 3.8
TTC28-204ENST00000468807 ARHGEF11O15085 1522 aa38.73■■■■□ 3.79
TTC28-204ENST00000468807 GRIN2BQ13224 1484 aa38.67■■■■□ 3.78
TTC28-204ENST00000468807 MAGI1Q96QZ7 1491 aaPredicted RBP38.63■■■■□ 3.77
TTC28-204ENST00000468807 CHMP7Q8WUX9 453 aaPredicted RBP38.62■■■■□ 3.77
TTC28-204ENST00000468807 GAPVD1Q14C86 1478 aa38.6■■■■□ 3.77
TTC28-204ENST00000468807 PBRM1Q86U86 1689 aa38.59■■■■□ 3.77
TTC28-204ENST00000468807 ABCA10Q8WWZ4 1543 aa38.58■■■■□ 3.77
TTC28-204ENST00000468807 WRNQ14191 1432 aaPredicted RBP eCLIP38.54■■■■□ 3.76
TTC28-204ENST00000468807 TOP2BQ02880 1626 aa38.51■■■■□ 3.76
TTC28-204ENST00000468807 BIVM-ERCC5R4GMW8 1640 aa38.51■■■■□ 3.76
TTC28-204ENST00000468807 ABCA5Q8WWZ7 1642 aa38.5■■■■□ 3.75
TTC28-204ENST00000468807 SYNJ1O43426 1573 aa38.5■■■■□ 3.75
TTC28-204ENST00000468807 SYNJ2O15056 1496 aa38.5■■■■□ 3.75
TTC28-204ENST00000468807 CYB5RLQ6IPT4 315 aa38.48■■■■□ 3.75
TTC28-204ENST00000468807 CLASP1Q7Z460 1538 aa38.41■■■■□ 3.74
TTC28-204ENST00000468807 ARAP1Q96P48 1450 aa38.36■■■■□ 3.73
TTC28-204ENST00000468807 ADAMTS12P58397 1594 aa38.22■■■■□ 3.71
TTC28-204ENST00000468807 GRIN2AQ12879 1464 aa38.18■■■■□ 3.7
TTC28-204ENST00000468807 ERICH3Q5RHP9 1530 aa38.11■■■■□ 3.69
TTC28-204ENST00000468807 FHAD1B1AJZ9 1412 aa38.11■■■■□ 3.69
TTC28-204ENST00000468807 CEP170Q5SW79 1584 aa38.03■■■■□ 3.68
TTC28-204ENST00000468807 TRHP20396 242 aaPredicted RBP38■■■■□ 3.67
TTC28-204ENST00000468807 NUP160Q12769 1436 aa37.99■■■■□ 3.67
TTC28-204ENST00000468807 ERCC6L2Q5T890 1561 aa37.89■■■■□ 3.66
TTC28-204ENST00000468807 SHROOM2Q13796 1616 aa37.79■■■■□ 3.64
TTC28-204ENST00000468807 KIF27Q86VH2 1401 aa37.79■■■■□ 3.64
TTC28-204ENST00000468807 IGF1RP08069 1367 aa37.68■■■■□ 3.62
TTC28-204ENST00000468807 RUSC2Q8N2Y8 1516 aa37.66■■■■□ 3.62
TTC28-204ENST00000468807 PRG4Q92954 1404 aaPredicted RBP37.66■■■■□ 3.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms