RNA–Protein interactions for RNA: ENST00000468676.5

TMEM39A-205, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 935 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-205ENST00000468676 NISCHQ9Y2I1 1504 aa35.78■■■■□ 3.32
TMEM39A-205ENST00000468676 CCDC180Q9P1Z9 1646 aa31.82■■■□□ 2.68
TMEM39A-205ENST00000468676 ABCC9O60706 1549 aa31.03■■■□□ 2.56
TMEM39A-205ENST00000468676 RB1CC1Q8TDY2 1594 aa29.94■■■□□ 2.38
TMEM39A-205ENST00000468676 NACADO15069 1562 aa29.93■■■□□ 2.38
TMEM39A-205ENST00000468676 DCAF8L2P0C7V8 631 aa29.87■■■□□ 2.37
TMEM39A-205ENST00000468676 ZCCHC6Q5VYS8 1495 aaKnown RBP29.8■■■□□ 2.36
TMEM39A-205ENST00000468676 MYO15BQ96JP2 1530 aa29.78■■■□□ 2.36
TMEM39A-205ENST00000468676 DCAF1Q9Y4B6 1507 aa29.65■■■□□ 2.34
TMEM39A-205ENST00000468676 UNC13AQ9UPW8 1703 aa29.2■■■□□ 2.27
TMEM39A-205ENST00000468676 PABPN1Q86U42 306 aaKnown RBP eCLIP29.01■■■□□ 2.23
TMEM39A-205ENST00000468676 SCRIBQ14160 1630 aa28.97■■■□□ 2.23
TMEM39A-205ENST00000468676 BICRAQ9NZM4 1560 aa28.96■■■□□ 2.23
TMEM39A-205ENST00000468676 SHROOM4Q9ULL8 1493 aa28.78■■■□□ 2.2
TMEM39A-205ENST00000468676 DNAJC5BQ9UF47 199 aa28.43■■■□□ 2.14
TMEM39A-205ENST00000468676 EIF4G1Q04637 1599 aaKnown RBP28.22■■■□□ 2.11
TMEM39A-205ENST00000468676 CC2D2AQ9P2K1 1620 aa28.09■■■□□ 2.09
TMEM39A-205ENST00000468676 CECR2Q9BXF3 1484 aa27.91■■■□□ 2.06
TMEM39A-205ENST00000468676 BAZ1AQ9NRL2 1556 aaPredicted RBP27.75■■■□□ 2.03
TMEM39A-205ENST00000468676 SMARCA4P51532 1647 aa27.74■■■□□ 2.03
TMEM39A-205ENST00000468676 SMARCA2P51531 1590 aa27.6■■■□□ 2.01
TMEM39A-205ENST00000468676 NCAPD3P42695 1498 aa27.6■■■□□ 2.01
TMEM39A-205ENST00000468676 ATAD2BQ9ULI0 1458 aa27.59■■■□□ 2.01
TMEM39A-205ENST00000468676 MROH2BQ7Z745 1585 aa27.54■■■□□ 2
TMEM39A-205ENST00000468676 PEG3Q9GZU2 1588 aa27.5■■□□□ 1.99
TMEM39A-205ENST00000468676 HMGXB3Q12766 1538 aa27.46■■□□□ 1.99
TMEM39A-205ENST00000468676 BAZ1BQ9UIG0 1483 aaKnown RBP27.38■■□□□ 1.97
TMEM39A-205ENST00000468676 RSF1Q96T23 1441 aaPredicted RBP27.26■■□□□ 1.95
TMEM39A-205ENST00000468676 WIZO95785 1651 aa27.24■■□□□ 1.95
TMEM39A-205ENST00000468676 TOP2AP11388 1531 aaKnown RBP26.99■■□□□ 1.91
TMEM39A-205ENST00000468676 LAMC3Q9Y6N6 1575 aa26.87■■□□□ 1.89
TMEM39A-205ENST00000468676 NESP48681 1621 aa26.85■■□□□ 1.89
TMEM39A-205ENST00000468676 CADPSQ9ULU8 1353 aa26.8■■□□□ 1.88
TMEM39A-205ENST00000468676 ERCC6Q03468 1493 aa26.8■■□□□ 1.88
TMEM39A-205ENST00000468676 PDS5BQ9NTI5 1447 aa26.71■■□□□ 1.87
TMEM39A-205ENST00000468676 CCDC88BA6NC98 1476 aa26.66■■□□□ 1.86
TMEM39A-205ENST00000468676 CFTRP13569 1480 aa26.63■■□□□ 1.85
TMEM39A-205ENST00000468676 SUPT5HO00267 1087 aaKnown RBP26.59■■□□□ 1.85
TMEM39A-205ENST00000468676 KIF21AQ7Z4S6 1674 aa26.55■■□□□ 1.84
TMEM39A-205ENST00000468676 CUX2O14529 1486 aa26.52■■□□□ 1.84
TMEM39A-205ENST00000468676 FANCD2Q9BXW9 1451 aa26.47■■□□□ 1.83
TMEM39A-205ENST00000468676 THOC2Q8NI27 1593 aaKnown RBP26.45■■□□□ 1.82
TMEM39A-205ENST00000468676 CEP164Q9UPV0 1460 aa26.44■■□□□ 1.82
TMEM39A-205ENST00000468676 PRDM2Q13029 1718 aa26.44■■□□□ 1.82
TMEM39A-205ENST00000468676 MRC2Q9UBG0 1479 aa26.39■■□□□ 1.82
TMEM39A-205ENST00000468676 WDR62O43379 1518 aa26.29■■□□□ 1.8
TMEM39A-205ENST00000468676 URB2Q14146 1524 aaKnown RBP26.18■■□□□ 1.78
TMEM39A-205ENST00000468676 ABCC8Q09428 1581 aa26.12■■□□□ 1.77
TMEM39A-205ENST00000468676 TOPBP1Q92547 1522 aa26.04■■□□□ 1.76
TMEM39A-205ENST00000468676 DNMBPQ6XZF7 1577 aa26.03■■□□□ 1.76
TMEM39A-205ENST00000468676 IFT140Q96RY7 1462 aa25.91■■□□□ 1.74
TMEM39A-205ENST00000468676 CUX1P39880 1505 aa25.84■■□□□ 1.73
TMEM39A-205ENST00000468676 POLA1P09884 1462 aaPredicted RBP25.81■■□□□ 1.72
TMEM39A-205ENST00000468676 FGD5Q6ZNL6 1462 aa25.75■■□□□ 1.71
TMEM39A-205ENST00000468676 TARBP1Q13395 1621 aaKnown RBP25.74■■□□□ 1.71
TMEM39A-205ENST00000468676 SOGA1O94964 1423 aa25.74■■□□□ 1.71
TMEM39A-205ENST00000468676 ZNF608Q9ULD9 1512 aaPredicted RBP25.72■■□□□ 1.71
TMEM39A-205ENST00000468676 WRNQ14191 1432 aaPredicted RBP eCLIP25.71■■□□□ 1.71
TMEM39A-205ENST00000468676 AEBP2Q6ZN18 517 aaPredicted RBP25.71■■□□□ 1.71
TMEM39A-205ENST00000468676 RAD54L2Q9Y4B4 1467 aa25.67■■□□□ 1.7
TMEM39A-205ENST00000468676 DNAJC5Q9H3Z4 198 aa25.67■■□□□ 1.7
TMEM39A-205ENST00000468676 TOP2BQ02880 1626 aa25.66■■□□□ 1.7
TMEM39A-205ENST00000468676 BIVM-ERCC5R4GMW8 1640 aa25.64■■□□□ 1.7
TMEM39A-205ENST00000468676 EIF4G3O43432 1585 aaKnown RBP25.63■■□□□ 1.69
TMEM39A-205ENST00000468676 WDR97A6NE52 1622 aa25.62■■□□□ 1.69
TMEM39A-205ENST00000468676 SYNJ1O43426 1573 aa25.61■■□□□ 1.69
TMEM39A-205ENST00000468676 AQRO60306 1485 aaKnown RBP eCLIP25.6■■□□□ 1.695e-7■■■■■ 45.1
TMEM39A-205ENST00000468676 TDRD9Q8NDG6 1382 aaKnown RBP25.56■■□□□ 1.68
TMEM39A-205ENST00000468676 ABCA10Q8WWZ4 1543 aa25.53■■□□□ 1.68
TMEM39A-205ENST00000468676 OSCARQ8IYS5 282 aa25.46■■□□□ 1.67
TMEM39A-205ENST00000468676 GRIN2BQ13224 1484 aa25.45■■□□□ 1.66
TMEM39A-205ENST00000468676 GAPVD1Q14C86 1478 aa25.44■■□□□ 1.66
TMEM39A-205ENST00000468676 ABCA5Q8WWZ7 1642 aa25.41■■□□□ 1.66
TMEM39A-205ENST00000468676 MAGI1Q96QZ7 1491 aaPredicted RBP25.38■■□□□ 1.65
TMEM39A-205ENST00000468676 SNAPC4Q5SXM2 1469 aa25.36■■□□□ 1.65
TMEM39A-205ENST00000468676 PBRM1Q86U86 1689 aa25.36■■□□□ 1.65
TMEM39A-205ENST00000468676 FBLN2P98095 1184 aa25.31■■□□□ 1.64
TMEM39A-205ENST00000468676 CHD1O14646 1710 aa25.3■■□□□ 1.64
TMEM39A-205ENST00000468676 CHMP7Q8WUX9 453 aaPredicted RBP25.28■■□□□ 1.64
TMEM39A-205ENST00000468676 SYNJ2O15056 1496 aa25.27■■□□□ 1.64
TMEM39A-205ENST00000468676 ERICH3Q5RHP9 1530 aa25.25■■□□□ 1.63
TMEM39A-205ENST00000468676 KIF27Q86VH2 1401 aa25.2■■□□□ 1.63
TMEM39A-205ENST00000468676 FHAD1B1AJZ9 1412 aa25.17■■□□□ 1.62
TMEM39A-205ENST00000468676 TRIM41Q8WV44 630 aa25.16■■□□□ 1.62
TMEM39A-205ENST00000468676 ADAMTS12P58397 1594 aa25.15■■□□□ 1.62
TMEM39A-205ENST00000468676 GRIN2AQ12879 1464 aa25.09■■□□□ 1.61
TMEM39A-205ENST00000468676 IGF1RP08069 1367 aa25.08■■□□□ 1.61
TMEM39A-205ENST00000468676 CLASP1Q7Z460 1538 aa25.03■■□□□ 1.6
TMEM39A-205ENST00000468676 CUL7Q14999 1698 aa25.02■■□□□ 1.6
TMEM39A-205ENST00000468676 NUP160Q12769 1436 aa24.99■■□□□ 1.59
TMEM39A-205ENST00000468676 ARHGEF11O15085 1522 aa24.97■■□□□ 1.59
TMEM39A-205ENST00000468676 RIMBP3CA6NJZ7 1639 aa24.97■■□□□ 1.59
TMEM39A-205ENST00000468676 RIMBP3BA6NNM3 1639 aa24.97■■□□□ 1.59
TMEM39A-205ENST00000468676 RIMBP3Q9UFD9 1639 aa24.97■■□□□ 1.59
TMEM39A-205ENST00000468676 CARMIL1Q5VZK9 1371 aa24.94■■□□□ 1.58
TMEM39A-205ENST00000468676 CEP170Q5SW79 1584 aa24.93■■□□□ 1.58
TMEM39A-205ENST00000468676 RUSC2Q8N2Y8 1516 aa24.89■■□□□ 1.57
TMEM39A-205ENST00000468676 CHIC1Q5VXU3 224 aa24.84■■□□□ 1.57
TMEM39A-205ENST00000468676 RAPGEF2Q9Y4G8 1499 aa24.8■■□□□ 1.56
TMEM39A-205ENST00000468676 SHROOM2Q13796 1616 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms