RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 NISCHQ9Y2I1 1504 aa52.81■■■■■ 6.05
SHANK1-206ENST00000468654 CCDC180Q9P1Z9 1646 aa47.62■■■■■ 5.21
SHANK1-206ENST00000468654 ABCC9O60706 1549 aa47.3■■■■■ 5.16
SHANK1-206ENST00000468654 RB1CC1Q8TDY2 1594 aa45.14■■■■■ 4.82
SHANK1-206ENST00000468654 NACADO15069 1562 aa44.81■■■■■ 4.76
SHANK1-206ENST00000468654 UNC13AQ9UPW8 1703 aa44.47■■■■■ 4.71
SHANK1-206ENST00000468654 MYO15BQ96JP2 1530 aa44.2■■■■■ 4.67
SHANK1-206ENST00000468654 DNAJC5BQ9UF47 199 aa44.18■■■■■ 4.66
SHANK1-206ENST00000468654 DCAF8L2P0C7V8 631 aa44.16■■■■■ 4.66
SHANK1-206ENST00000468654 BICRAQ9NZM4 1560 aa43.91■■■■■ 4.62
SHANK1-206ENST00000468654 PABPN1Q86U42 306 aaKnown RBP eCLIP43.86■■■■■ 4.61
SHANK1-206ENST00000468654 ZCCHC6Q5VYS8 1495 aaKnown RBP43.85■■■■■ 4.61
SHANK1-206ENST00000468654 DCAF1Q9Y4B6 1507 aa43.67■■■■■ 4.58
SHANK1-206ENST00000468654 SCRIBQ14160 1630 aa43.3■■■■■ 4.52
SHANK1-206ENST00000468654 SHROOM4Q9ULL8 1493 aa43.25■■■■■ 4.51
SHANK1-206ENST00000468654 CC2D2AQ9P2K1 1620 aa42.87■■■■■ 4.45
SHANK1-206ENST00000468654 EIF4G1Q04637 1599 aaKnown RBP42.78■■■■■ 4.44
SHANK1-206ENST00000468654 CECR2Q9BXF3 1484 aa42.59■■■■■ 4.41
SHANK1-206ENST00000468654 SMARCA4P51532 1647 aa41.32■■■■■ 4.2
SHANK1-206ENST00000468654 NCAPD3P42695 1498 aa41.26■■■■■ 4.2
SHANK1-206ENST00000468654 ATAD2BQ9ULI0 1458 aa41.18■■■■■ 4.18
SHANK1-206ENST00000468654 HMGXB3Q12766 1538 aa41.13■■■■■ 4.18
SHANK1-206ENST00000468654 SMARCA2P51531 1590 aa41.13■■■■■ 4.18
SHANK1-206ENST00000468654 BAZ1AQ9NRL2 1556 aaPredicted RBP41.03■■■■■ 4.16
SHANK1-206ENST00000468654 PEG3Q9GZU2 1588 aa40.91■■■■■ 4.14
SHANK1-206ENST00000468654 ERCC6Q03468 1493 aa40.81■■■■■ 4.12
SHANK1-206ENST00000468654 BAZ1BQ9UIG0 1483 aaKnown RBP40.81■■■■■ 4.12
SHANK1-206ENST00000468654 CUX2O14529 1486 aa40.79■■■■■ 4.12
SHANK1-206ENST00000468654 MROH2BQ7Z745 1585 aa40.72■■■■■ 4.11
SHANK1-206ENST00000468654 NESP48681 1621 aa40.7■■■■■ 4.11
SHANK1-206ENST00000468654 DNAJC5Q9H3Z4 198 aa40.49■■■■■ 4.07
SHANK1-206ENST00000468654 LAMC3Q9Y6N6 1575 aa40.48■■■■■ 4.07
SHANK1-206ENST00000468654 THOC2Q8NI27 1593 aaKnown RBP40.47■■■■■ 4.07
SHANK1-206ENST00000468654 KIF21AQ7Z4S6 1674 aa40.41■■■■■ 4.06
SHANK1-206ENST00000468654 WIZO95785 1651 aa40.34■■■■■ 4.05
SHANK1-206ENST00000468654 PDS5BQ9NTI5 1447 aa40.04■■■■■ 4
SHANK1-206ENST00000468654 CADPSQ9ULU8 1353 aa39.95■■■■□ 3.99
SHANK1-206ENST00000468654 MRC2Q9UBG0 1479 aa39.82■■■■□ 3.97
SHANK1-206ENST00000468654 WDR62O43379 1518 aa39.82■■■■□ 3.97
SHANK1-206ENST00000468654 RSF1Q96T23 1441 aaPredicted RBP39.79■■■■□ 3.96
SHANK1-206ENST00000468654 TOP2AP11388 1531 aaKnown RBP39.78■■■■□ 3.96
SHANK1-206ENST00000468654 CEP164Q9UPV0 1460 aa39.67■■■■□ 3.94
SHANK1-206ENST00000468654 PRDM2Q13029 1718 aa39.65■■■■□ 3.94
SHANK1-206ENST00000468654 CFTRP13569 1480 aa39.6■■■■□ 3.93
SHANK1-206ENST00000468654 FANCD2Q9BXW9 1451 aa39.6■■■■□ 3.93
SHANK1-206ENST00000468654 URB2Q14146 1524 aaKnown RBP39.34■■■■□ 3.89
SHANK1-206ENST00000468654 CCDC88BA6NC98 1476 aa39.19■■■■□ 3.86
SHANK1-206ENST00000468654 TOPBP1Q92547 1522 aa38.9■■■■□ 3.82
SHANK1-206ENST00000468654 IFT140Q96RY7 1462 aa38.84■■■■□ 3.81
SHANK1-206ENST00000468654 DNMBPQ6XZF7 1577 aa38.83■■■■□ 3.81
SHANK1-206ENST00000468654 ZNF608Q9ULD9 1512 aaPredicted RBP38.81■■■■□ 3.8
SHANK1-206ENST00000468654 EIF4G3O43432 1585 aaKnown RBP38.78■■■■□ 3.8
SHANK1-206ENST00000468654 TRIM41Q8WV44 630 aa38.72■■■■□ 3.79
SHANK1-206ENST00000468654 ABCC8Q09428 1581 aa38.71■■■■□ 3.79
SHANK1-206ENST00000468654 TARBP1Q13395 1621 aaKnown RBP38.67■■■■□ 3.78
SHANK1-206ENST00000468654 OSCARQ8IYS5 282 aa38.65■■■■□ 3.78
SHANK1-206ENST00000468654 CHD1O14646 1710 aa38.58■■■■□ 3.77
SHANK1-206ENST00000468654 RIMBP3CA6NJZ7 1639 aa38.56■■■■□ 3.76
SHANK1-206ENST00000468654 RIMBP3BA6NNM3 1639 aa38.56■■■■□ 3.76
SHANK1-206ENST00000468654 RIMBP3Q9UFD9 1639 aa38.56■■■■□ 3.76
SHANK1-206ENST00000468654 POLA1P09884 1462 aaPredicted RBP38.5■■■■□ 3.75
SHANK1-206ENST00000468654 AQRO60306 1485 aaKnown RBP eCLIP38.37■■■■□ 3.73
SHANK1-206ENST00000468654 ARHGEF11O15085 1522 aa38.35■■■■□ 3.73
SHANK1-206ENST00000468654 RAD54L2Q9Y4B4 1467 aa38.3■■■■□ 3.72
SHANK1-206ENST00000468654 CUX1P39880 1505 aa38.28■■■■□ 3.72
SHANK1-206ENST00000468654 WDR97A6NE52 1622 aa38.27■■■■□ 3.72
SHANK1-206ENST00000468654 FGD5Q6ZNL6 1462 aa38.27■■■■□ 3.72
SHANK1-206ENST00000468654 SOGA1O94964 1423 aa38.16■■■■□ 3.7
SHANK1-206ENST00000468654 SUPT5HO00267 1087 aaKnown RBP38.12■■■■□ 3.69
SHANK1-206ENST00000468654 PBRM1Q86U86 1689 aa38.11■■■■□ 3.69
SHANK1-206ENST00000468654 SNAPC4Q5SXM2 1469 aa38.09■■■■□ 3.69
SHANK1-206ENST00000468654 TDRD9Q8NDG6 1382 aaKnown RBP38.08■■■■□ 3.69
SHANK1-206ENST00000468654 CLASP1Q7Z460 1538 aa37.99■■■■□ 3.67
SHANK1-206ENST00000468654 ARAP1Q96P48 1450 aa37.97■■■■□ 3.67
SHANK1-206ENST00000468654 MAGI1Q96QZ7 1491 aaPredicted RBP37.97■■■■□ 3.67
SHANK1-206ENST00000468654 ABCA5Q8WWZ7 1642 aa37.94■■■■□ 3.66
SHANK1-206ENST00000468654 FBLN2P98095 1184 aa37.93■■■■□ 3.66
SHANK1-206ENST00000468654 GRIN2BQ13224 1484 aa37.92■■■■□ 3.66
SHANK1-206ENST00000468654 SYNJ1O43426 1573 aa37.91■■■■□ 3.66
SHANK1-206ENST00000468654 SYNJ2O15056 1496 aa37.83■■■■□ 3.65
SHANK1-206ENST00000468654 ABCA10Q8WWZ4 1543 aa37.82■■■■□ 3.65
SHANK1-206ENST00000468654 BIVM-ERCC5R4GMW8 1640 aa37.81■■■■□ 3.64
SHANK1-206ENST00000468654 GAPVD1Q14C86 1478 aa37.8■■■■□ 3.64
SHANK1-206ENST00000468654 CYB5RLQ6IPT4 315 aa37.75■■■■□ 3.63
SHANK1-206ENST00000468654 TOP2BQ02880 1626 aa37.72■■■■□ 3.63
SHANK1-206ENST00000468654 CHMP7Q8WUX9 453 aaPredicted RBP37.66■■■■□ 3.62
SHANK1-206ENST00000468654 ADAMTS12P58397 1594 aa37.63■■■■□ 3.62
SHANK1-206ENST00000468654 WRNQ14191 1432 aaPredicted RBP eCLIP37.56■■■■□ 3.6
SHANK1-206ENST00000468654 GRIN2AQ12879 1464 aa37.5■■■■□ 3.59
SHANK1-206ENST00000468654 CEP170Q5SW79 1584 aa37.47■■■■□ 3.59
SHANK1-206ENST00000468654 ERCC6L2Q5T890 1561 aa37.38■■■■□ 3.58
SHANK1-206ENST00000468654 ERICH3Q5RHP9 1530 aa37.37■■■■□ 3.57
SHANK1-206ENST00000468654 SHROOM2Q13796 1616 aa37.36■■■■□ 3.57
SHANK1-206ENST00000468654 NUP160Q12769 1436 aa37.36■■■■□ 3.57
SHANK1-206ENST00000468654 TRHP20396 242 aaPredicted RBP37.3■■■■□ 3.56
SHANK1-206ENST00000468654 FHAD1B1AJZ9 1412 aa37.29■■■■□ 3.56
SHANK1-206ENST00000468654 RUSC2Q8N2Y8 1516 aa37.13■■■■□ 3.53
SHANK1-206ENST00000468654 CUL7Q14999 1698 aa36.96■■■■□ 3.51
SHANK1-206ENST00000468654 KIF13AQ9H1H9 1805 aa36.94■■■■□ 3.5
SHANK1-206ENST00000468654 PRG4Q92954 1404 aaPredicted RBP36.9■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms