RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 NISCHQ9Y2I1 1504 aa25.16■■□□□ 1.62
MSX1-202ENST00000468421 CCDC180Q9P1Z9 1646 aa22.15■■□□□ 1.14
MSX1-202ENST00000468421 ABCC9O60706 1549 aa21.1■□□□□ 0.97
MSX1-202ENST00000468421 ZCCHC6Q5VYS8 1495 aaKnown RBP21.1■□□□□ 0.97
MSX1-202ENST00000468421 DCAF1Q9Y4B6 1507 aa20.81■□□□□ 0.92
MSX1-202ENST00000468421 DCAF8L2P0C7V8 631 aa20.72■□□□□ 0.91
MSX1-202ENST00000468421 MYO15BQ96JP2 1530 aa20.66■□□□□ 0.9
MSX1-202ENST00000468421 NACADO15069 1562 aa20.62■□□□□ 0.89
MSX1-202ENST00000468421 RB1CC1Q8TDY2 1594 aa20.52■□□□□ 0.88
MSX1-202ENST00000468421 SCRIBQ14160 1630 aa20.29■□□□□ 0.84
MSX1-202ENST00000468421 SHROOM4Q9ULL8 1493 aa20.27■□□□□ 0.84
MSX1-202ENST00000468421 UNC13AQ9UPW8 1703 aa20.22■□□□□ 0.83
MSX1-202ENST00000468421 BICRAQ9NZM4 1560 aa19.95■□□□□ 0.78
MSX1-202ENST00000468421 PABPN1Q86U42 306 aaKnown RBP eCLIP19.77■□□□□ 0.76
MSX1-202ENST00000468421 CECR2Q9BXF3 1484 aa19.57■□□□□ 0.72
MSX1-202ENST00000468421 BAZ1AQ9NRL2 1556 aaPredicted RBP19.44■□□□□ 0.7
MSX1-202ENST00000468421 SMARCA4P51532 1647 aa19.44■□□□□ 0.7
MSX1-202ENST00000468421 MROH2BQ7Z745 1585 aa19.44■□□□□ 0.7
MSX1-202ENST00000468421 RSF1Q96T23 1441 aaPredicted RBP19.38■□□□□ 0.69
MSX1-202ENST00000468421 EIF4G1Q04637 1599 aaKnown RBP19.34■□□□□ 0.69
MSX1-202ENST00000468421 SUPT5HO00267 1087 aaKnown RBP19.31■□□□□ 0.68
MSX1-202ENST00000468421 WIZO95785 1651 aa19.3■□□□□ 0.68
MSX1-202ENST00000468421 PEG3Q9GZU2 1588 aa19.2■□□□□ 0.66
MSX1-202ENST00000468421 ATAD2BQ9ULI0 1458 aa19.14■□□□□ 0.65
MSX1-202ENST00000468421 CC2D2AQ9P2K1 1620 aa19.14■□□□□ 0.65
MSX1-202ENST00000468421 SMARCA2P51531 1590 aa19.13■□□□□ 0.65
MSX1-202ENST00000468421 TOP2AP11388 1531 aaKnown RBP19.07■□□□□ 0.64
MSX1-202ENST00000468421 DNAJC5BQ9UF47 199 aa19.05■□□□□ 0.64
MSX1-202ENST00000468421 HMGXB3Q12766 1538 aa19.01■□□□□ 0.63
MSX1-202ENST00000468421 BAZ1BQ9UIG0 1483 aaKnown RBP19.01■□□□□ 0.63
MSX1-202ENST00000468421 NCAPD3P42695 1498 aa19■□□□□ 0.63
MSX1-202ENST00000468421 CCDC88BA6NC98 1476 aa18.83■□□□□ 0.6
MSX1-202ENST00000468421 PRDM2Q13029 1718 aa18.55■□□□□ 0.56
MSX1-202ENST00000468421 CFTRP13569 1480 aa18.52■□□□□ 0.55
MSX1-202ENST00000468421 CADPSQ9ULU8 1353 aa18.47■□□□□ 0.55
MSX1-202ENST00000468421 NESP48681 1621 aa18.45■□□□□ 0.54
MSX1-202ENST00000468421 LAMC3Q9Y6N6 1575 aa18.45■□□□□ 0.54
MSX1-202ENST00000468421 ABCC8Q09428 1581 aa18.38■□□□□ 0.53
MSX1-202ENST00000468421 CHIC1Q5VXU3 224 aa18.37■□□□□ 0.53
MSX1-202ENST00000468421 KIF21AQ7Z4S6 1674 aa18.31■□□□□ 0.52
MSX1-202ENST00000468421 FANCD2Q9BXW9 1451 aa18.3■□□□□ 0.52
MSX1-202ENST00000468421 SYNJ1O43426 1573 aa18.25■□□□□ 0.51
MSX1-202ENST00000468421 WRNQ14191 1432 aaPredicted RBP eCLIP18.24■□□□□ 0.51
MSX1-202ENST00000468421 PDS5BQ9NTI5 1447 aa18.23■□□□□ 0.51
MSX1-202ENST00000468421 CEP164Q9UPV0 1460 aa18.22■□□□□ 0.51
MSX1-202ENST00000468421 BIVM-ERCC5R4GMW8 1640 aa18.22■□□□□ 0.51
MSX1-202ENST00000468421 CUX1P39880 1505 aa18.21■□□□□ 0.51
MSX1-202ENST00000468421 TOP2BQ02880 1626 aa18.19■□□□□ 0.5
MSX1-202ENST00000468421 TRIM41Q8WV44 630 aa18.16■□□□□ 0.5
MSX1-202ENST00000468421 DNMBPQ6XZF7 1577 aa18.13■□□□□ 0.49
MSX1-202ENST00000468421 URB2Q14146 1524 aaKnown RBP18.12■□□□□ 0.49
MSX1-202ENST00000468421 TOPBP1Q92547 1522 aa18.09■□□□□ 0.49
MSX1-202ENST00000468421 ERCC6Q03468 1493 aa18.09■□□□□ 0.49
MSX1-202ENST00000468421 THOC2Q8NI27 1593 aaKnown RBP18.08■□□□□ 0.48
MSX1-202ENST00000468421 MRC2Q9UBG0 1479 aa18.07■□□□□ 0.48
MSX1-202ENST00000468421 FGD5Q6ZNL6 1462 aa18.03■□□□□ 0.48
MSX1-202ENST00000468421 WDR62O43379 1518 aa18.02■□□□□ 0.47
MSX1-202ENST00000468421 POLA1P09884 1462 aaPredicted RBP17.98■□□□□ 0.47
MSX1-202ENST00000468421 WDR97A6NE52 1622 aa17.94■□□□□ 0.46
MSX1-202ENST00000468421 SOGA1O94964 1423 aa17.93■□□□□ 0.46
MSX1-202ENST00000468421 RAD54L2Q9Y4B4 1467 aa17.91■□□□□ 0.46
MSX1-202ENST00000468421 RUSC2Q8N2Y8 1516 aa17.91■□□□□ 0.46
MSX1-202ENST00000468421 TARBP1Q13395 1621 aaKnown RBP17.89■□□□□ 0.45
MSX1-202ENST00000468421 CUX2O14529 1486 aa17.88■□□□□ 0.45
MSX1-202ENST00000468421 ABCA10Q8WWZ4 1543 aa17.85■□□□□ 0.45
MSX1-202ENST00000468421 FAM9AQ8IZU1 332 aaPredicted RBP17.84■□□□□ 0.45
MSX1-202ENST00000468421 DNAJC5Q9H3Z4 198 aa17.82■□□□□ 0.44
MSX1-202ENST00000468421 EEA1Q15075 1411 aa17.81■□□□□ 0.44
MSX1-202ENST00000468421 ABCA5Q8WWZ7 1642 aa17.8■□□□□ 0.44
MSX1-202ENST00000468421 KIF27Q86VH2 1401 aa17.79■□□□□ 0.44
MSX1-202ENST00000468421 IFT140Q96RY7 1462 aa17.78■□□□□ 0.44
MSX1-202ENST00000468421 PBRM1Q86U86 1689 aa17.73■□□□□ 0.43
MSX1-202ENST00000468421 ZNF608Q9ULD9 1512 aaPredicted RBP17.72■□□□□ 0.43
MSX1-202ENST00000468421 EIF4G3O43432 1585 aaKnown RBP17.71■□□□□ 0.43
MSX1-202ENST00000468421 TDRD9Q8NDG6 1382 aaKnown RBP17.71■□□□□ 0.43
MSX1-202ENST00000468421 CSRNP3Q8WYN3 585 aa17.7■□□□□ 0.42
MSX1-202ENST00000468421 GAPVD1Q14C86 1478 aa17.69■□□□□ 0.42
MSX1-202ENST00000468421 KIF21BO75037 1637 aa17.69■□□□□ 0.42
MSX1-202ENST00000468421 AQRO60306 1485 aaKnown RBP eCLIP17.67■□□□□ 0.42
MSX1-202ENST00000468421 ERICH3Q5RHP9 1530 aa17.65■□□□□ 0.42
MSX1-202ENST00000468421 IGF1RP08069 1367 aa17.65■□□□□ 0.42
MSX1-202ENST00000468421 CUL7Q14999 1698 aa17.64■□□□□ 0.41
MSX1-202ENST00000468421 LOC105371045A0A1W2PR82 267 aa17.63■□□□□ 0.41
MSX1-202ENST00000468421 PRXQ9BXM0 1461 aa17.63■□□□□ 0.41
MSX1-202ENST00000468421 EHMT2Q96KQ7 1210 aa17.6■□□□□ 0.41
MSX1-202ENST00000468421 GRIN2BQ13224 1484 aa17.6■□□□□ 0.41
MSX1-202ENST00000468421 RAPGEF2Q9Y4G8 1499 aa17.59■□□□□ 0.41
MSX1-202ENST00000468421 GOLGA3Q08378 1498 aa17.58■□□□□ 0.41
MSX1-202ENST00000468421 ADAMTS12P58397 1594 aa17.57■□□□□ 0.4
MSX1-202ENST00000468421 CARMIL1Q5VZK9 1371 aa17.56■□□□□ 0.4
MSX1-202ENST00000468421 SNAPC4Q5SXM2 1469 aa17.54■□□□□ 0.4
MSX1-202ENST00000468421 MAGI1Q96QZ7 1491 aaPredicted RBP17.49■□□□□ 0.39
MSX1-202ENST00000468421 FHAD1B1AJZ9 1412 aa17.48■□□□□ 0.39
MSX1-202ENST00000468421 CTTNBP2Q8WZ74 1663 aa17.45■□□□□ 0.38
MSX1-202ENST00000468421 TNIKQ9UKE5 1360 aa17.45■□□□□ 0.38
MSX1-202ENST00000468421 UBTFP17480 764 aaKnown RBP17.43■□□□□ 0.38
MSX1-202ENST00000468421 CHD1O14646 1710 aa17.42■□□□□ 0.38
MSX1-202ENST00000468421 SYNJ2O15056 1496 aa17.42■□□□□ 0.38
MSX1-202ENST00000468421 GRIN2AQ12879 1464 aa17.4■□□□□ 0.38
MSX1-202ENST00000468421 CEP162Q5TB80 1403 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms