RNA–Protein interactions for RNA: ENST00000468338.5

COL4A6-205, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5

Gene COL4A6, Length 865 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-205ENST00000468338 NISCHQ9Y2I1 1504 aa27.39■■□□□ 1.98
COL4A6-205ENST00000468338 CHIC1Q5VXU3 224 aa27.3■■□□□ 1.96
COL4A6-205ENST00000468338 AEBP2Q6ZN18 517 aaPredicted RBP26.98■■□□□ 1.91
COL4A6-205ENST00000468338 CCDC180Q9P1Z9 1646 aa24.39■■□□□ 1.49
COL4A6-205ENST00000468338 PHF23Q9BUL5 403 aaPredicted RBP24.05■■□□□ 1.44
COL4A6-205ENST00000468338 ABCC9O60706 1549 aa23.93■■□□□ 1.42
COL4A6-205ENST00000468338 RB1CC1Q8TDY2 1594 aa22.99■■□□□ 1.27
COL4A6-205ENST00000468338 NACADO15069 1562 aa22.97■■□□□ 1.27
COL4A6-205ENST00000468338 SENP3Q9H4L4 574 aaPredicted RBP22.86■■□□□ 1.25
COL4A6-205ENST00000468338 MYO15BQ96JP2 1530 aa22.86■■□□□ 1.25
COL4A6-205ENST00000468338 DCAF8L2P0C7V8 631 aa22.82■■□□□ 1.24
COL4A6-205ENST00000468338 ZCCHC6Q5VYS8 1495 aaKnown RBP22.79■■□□□ 1.24
COL4A6-205ENST00000468338 DCAF1Q9Y4B6 1507 aa22.7■■□□□ 1.22
COL4A6-205ENST00000468338 PLPPR3Q6T4P5 718 aa22.62■■□□□ 1.21
COL4A6-205ENST00000468338 UNC13AQ9UPW8 1703 aa22.48■■□□□ 1.19
COL4A6-205ENST00000468338 BICRAQ9NZM4 1560 aa22.35■■□□□ 1.17
COL4A6-205ENST00000468338 PABPN1Q86U42 306 aaKnown RBP eCLIP22.34■■□□□ 1.17
COL4A6-205ENST00000468338 SCRIBQ14160 1630 aa22.17■■□□□ 1.14
COL4A6-205ENST00000468338 DNAJC5BQ9UF47 199 aa22.15■■□□□ 1.14
COL4A6-205ENST00000468338 SHROOM4Q9ULL8 1493 aa22.11■■□□□ 1.13
COL4A6-205ENST00000468338 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
COL4A6-205ENST00000468338 CC2D2AQ9P2K1 1620 aa21.66■■□□□ 1.06
COL4A6-205ENST00000468338 CECR2Q9BXF3 1484 aa21.53■■□□□ 1.04
COL4A6-205ENST00000468338 SMARCA4P51532 1647 aa21.26■□□□□ 0.99
COL4A6-205ENST00000468338 NCAPD3P42695 1498 aa21.23■□□□□ 0.99
COL4A6-205ENST00000468338 BAZ1AQ9NRL2 1556 aaPredicted RBP21.22■□□□□ 0.99
COL4A6-205ENST00000468338 ATAD2BQ9ULI0 1458 aa21.2■□□□□ 0.98
COL4A6-205ENST00000468338 SMARCA2P51531 1590 aa21.14■□□□□ 0.97
COL4A6-205ENST00000468338 PEG3Q9GZU2 1588 aa21.1■□□□□ 0.97
COL4A6-205ENST00000468338 MROH2BQ7Z745 1585 aa21.1■□□□□ 0.97
COL4A6-205ENST00000468338 HMGXB3Q12766 1538 aa21.09■□□□□ 0.97
COL4A6-205ENST00000468338 ADRA2BP18089 450 aa21.06■□□□□ 0.96
COL4A6-205ENST00000468338 FOXD1Q16676 465 aa21.04■□□□□ 0.96
COL4A6-205ENST00000468338 BAZ1BQ9UIG0 1483 aaKnown RBP20.97■□□□□ 0.95
COL4A6-205ENST00000468338 PPP6R1Q9UPN7 881 aa20.92■□□□□ 0.94
COL4A6-205ENST00000468338 WIZO95785 1651 aa20.83■□□□□ 0.93
COL4A6-205ENST00000468338 RSF1Q96T23 1441 aaPredicted RBP20.83■□□□□ 0.93
COL4A6-205ENST00000468338 NESP48681 1621 aa20.69■□□□□ 0.9
COL4A6-205ENST00000468338 LAMC3Q9Y6N6 1575 aa20.64■□□□□ 0.9
COL4A6-205ENST00000468338 TOP2AP11388 1531 aaKnown RBP20.62■□□□□ 0.89
COL4A6-205ENST00000468338 ERCC6Q03468 1493 aa20.6■□□□□ 0.89
COL4A6-205ENST00000468338 CADPSQ9ULU8 1353 aa20.59■□□□□ 0.89
COL4A6-205ENST00000468338 KCNA4P22459 653 aa20.54■□□□□ 0.88
COL4A6-205ENST00000468338 PDS5BQ9NTI5 1447 aa20.5■□□□□ 0.87
COL4A6-205ENST00000468338 CUX2O14529 1486 aa20.5■□□□□ 0.87
COL4A6-205ENST00000468338 CFTRP13569 1480 aa20.44■□□□□ 0.86
COL4A6-205ENST00000468338 KIF21AQ7Z4S6 1674 aa20.42■□□□□ 0.86
COL4A6-205ENST00000468338 THOC2Q8NI27 1593 aaKnown RBP20.42■□□□□ 0.86
COL4A6-205ENST00000468338 CCDC88BA6NC98 1476 aa20.39■□□□□ 0.85
COL4A6-205ENST00000468338 FANCD2Q9BXW9 1451 aa20.31■□□□□ 0.84
COL4A6-205ENST00000468338 MRC2Q9UBG0 1479 aa20.29■□□□□ 0.84
COL4A6-205ENST00000468338 CEP164Q9UPV0 1460 aa20.28■□□□□ 0.84
COL4A6-205ENST00000468338 WDR62O43379 1518 aa20.25■□□□□ 0.83
COL4A6-205ENST00000468338 PRDM2Q13029 1718 aa20.23■□□□□ 0.83
COL4A6-205ENST00000468338 EHMT2Q96KQ7 1210 aa20.23■□□□□ 0.83
COL4A6-205ENST00000468338 URB2Q14146 1524 aaKnown RBP20.12■□□□□ 0.81
COL4A6-205ENST00000468338 SUPT5HO00267 1087 aaKnown RBP20.11■□□□□ 0.81
COL4A6-205ENST00000468338 PIAS4Q8N2W9 510 aaPredicted RBP20.11■□□□□ 0.81
COL4A6-205ENST00000468338 DNAJC5Q9H3Z4 198 aa20.04■□□□□ 0.8
COL4A6-205ENST00000468338 PPP4R3CPQ6ZMV5 832 aa20.02■□□□□ 0.8
COL4A6-205ENST00000468338 TOPBP1Q92547 1522 aa19.99■□□□□ 0.79
COL4A6-205ENST00000468338 ABCC8Q09428 1581 aa19.99■□□□□ 0.79
COL4A6-205ENST00000468338 DNMBPQ6XZF7 1577 aa19.94■□□□□ 0.78
COL4A6-205ENST00000468338 IFT140Q96RY7 1462 aa19.88■□□□□ 0.77
COL4A6-205ENST00000468338 NCBP3Q53F19 620 aaKnown RBP19.85■□□□□ 0.77
COL4A6-205ENST00000468338 POLA1P09884 1462 aaPredicted RBP19.8■□□□□ 0.76
COL4A6-205ENST00000468338 ZNF608Q9ULD9 1512 aaPredicted RBP19.8■□□□□ 0.76
COL4A6-205ENST00000468338 SLC4A1APQ9BWU0 796 aaKnown RBP19.79■□□□□ 0.76
COL4A6-205ENST00000468338 CUX1P39880 1505 aa19.79■□□□□ 0.76
COL4A6-205ENST00000468338 TARBP1Q13395 1621 aaKnown RBP19.79■□□□□ 0.76
COL4A6-205ENST00000468338 FGD5Q6ZNL6 1462 aa19.73■□□□□ 0.75
COL4A6-205ENST00000468338 SOGA1O94964 1423 aa19.71■□□□□ 0.75
COL4A6-205ENST00000468338 RAD54L2Q9Y4B4 1467 aa19.71■□□□□ 0.75
COL4A6-205ENST00000468338 EIF4G3O43432 1585 aaKnown RBP19.69■□□□□ 0.74
COL4A6-205ENST00000468338 AQRO60306 1485 aaKnown RBP eCLIP19.67■□□□□ 0.74
COL4A6-205ENST00000468338 WDR97A6NE52 1622 aa19.63■□□□□ 0.73
COL4A6-205ENST00000468338 OSCARQ8IYS5 282 aa19.62■□□□□ 0.73
COL4A6-205ENST00000468338 WRNQ14191 1432 aaPredicted RBP eCLIP19.61■□□□□ 0.73
COL4A6-205ENST00000468338 TDRD9Q8NDG6 1382 aaKnown RBP19.61■□□□□ 0.73
COL4A6-205ENST00000468338 TOP2BQ02880 1626 aa19.59■□□□□ 0.73
COL4A6-205ENST00000468338 BIVM-ERCC5R4GMW8 1640 aa19.58■□□□□ 0.73
COL4A6-205ENST00000468338 ABCA10Q8WWZ4 1543 aa19.56■□□□□ 0.72
COL4A6-205ENST00000468338 SYNJ1O43426 1573 aa19.56■□□□□ 0.72
COL4A6-205ENST00000468338 CSRNP3Q8WYN3 585 aa19.55■□□□□ 0.72
COL4A6-205ENST00000468338 GRIN2BQ13224 1484 aa19.5■□□□□ 0.71
COL4A6-205ENST00000468338 GAPVD1Q14C86 1478 aa19.48■□□□□ 0.71
COL4A6-205ENST00000468338 ABCA5Q8WWZ7 1642 aa19.47■□□□□ 0.71
COL4A6-205ENST00000468338 SNAPC4Q5SXM2 1469 aa19.47■□□□□ 0.71
COL4A6-205ENST00000468338 MAGI1Q96QZ7 1491 aaPredicted RBP19.47■□□□□ 0.71
COL4A6-205ENST00000468338 CHD1O14646 1710 aa19.46■□□□□ 0.71
COL4A6-205ENST00000468338 NPM3O75607 178 aaKnown RBP19.44■□□□□ 0.7
COL4A6-205ENST00000468338 PBRM1Q86U86 1689 aa19.42■□□□□ 0.7
COL4A6-205ENST00000468338 FBLN2P98095 1184 aa19.39■□□□□ 0.69
COL4A6-205ENST00000468338 SYNJ2O15056 1496 aa19.39■□□□□ 0.69
COL4A6-205ENST00000468338 CHMP7Q8WUX9 453 aaPredicted RBP19.36■□□□□ 0.69
COL4A6-205ENST00000468338 SCAF1Q9H7N4 1312 aaKnown RBP19.34■□□□□ 0.69
COL4A6-205ENST00000468338 ERICH3Q5RHP9 1530 aa19.31■□□□□ 0.68
COL4A6-205ENST00000468338 ARHGEF11O15085 1522 aa19.3■□□□□ 0.68
COL4A6-205ENST00000468338 CLASP1Q7Z460 1538 aa19.3■□□□□ 0.68
COL4A6-205ENST00000468338 RIMBP3CA6NJZ7 1639 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms