RNA–Protein interactions for RNA: ENST00000468311.1

PFDN2-202, Transcript of prefoldin subunit 2, humanhuman

TSL 2

Gene PFDN2, Length 408 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN2-202ENST00000468311 NISCHQ9Y2I1 1504 aa56.52■■■■■ 6.64
PFDN2-202ENST00000468311 CCDC180Q9P1Z9 1646 aa50.39■■■■■ 5.66
PFDN2-202ENST00000468311 ABCC9O60706 1549 aa49.47■■■■■ 5.51
PFDN2-202ENST00000468311 RB1CC1Q8TDY2 1594 aa47.57■■■■■ 5.21
PFDN2-202ENST00000468311 NACADO15069 1562 aa47.48■■■■■ 5.19
PFDN2-202ENST00000468311 MYO15BQ96JP2 1530 aa47.2■■■■■ 5.15
PFDN2-202ENST00000468311 DCAF8L2P0C7V8 631 aa47.18■■■■■ 5.14
PFDN2-202ENST00000468311 ZCCHC6Q5VYS8 1495 aaKnown RBP47.04■■■■■ 5.12
PFDN2-202ENST00000468311 DCAF1Q9Y4B6 1507 aa46.85■■■■■ 5.09
PFDN2-202ENST00000468311 UNC13AQ9UPW8 1703 aa46.31■■■■■ 5
PFDN2-202ENST00000468311 PABPN1Q86U42 306 aaKnown RBP eCLIP46.15■■■■■ 4.98
PFDN2-202ENST00000468311 BICRAQ9NZM4 1560 aa46.08■■■■■ 4.97
PFDN2-202ENST00000468311 SCRIBQ14160 1630 aa45.83■■■■■ 4.93
PFDN2-202ENST00000468311 SHROOM4Q9ULL8 1493 aa45.78■■■■■ 4.92
PFDN2-202ENST00000468311 DNAJC5BQ9UF47 199 aa45.64■■■■■ 4.9
PFDN2-202ENST00000468311 EIF4G1Q04637 1599 aaKnown RBP44.91■■■■■ 4.78
PFDN2-202ENST00000468311 CC2D2AQ9P2K1 1620 aa44.76■■■■■ 4.76
PFDN2-202ENST00000468311 CECR2Q9BXF3 1484 aa44.54■■■■■ 4.72
PFDN2-202ENST00000468311 SMARCA4P51532 1647 aa43.88■■■■■ 4.61
PFDN2-202ENST00000468311 BAZ1AQ9NRL2 1556 aaPredicted RBP43.85■■■■■ 4.61
PFDN2-202ENST00000468311 NCAPD3P42695 1498 aa43.83■■■■■ 4.61
PFDN2-202ENST00000468311 ATAD2BQ9ULI0 1458 aa43.76■■■■■ 4.6
PFDN2-202ENST00000468311 SMARCA2P51531 1590 aa43.72■■■■■ 4.59
PFDN2-202ENST00000468311 HMGXB3Q12766 1538 aa43.58■■■■■ 4.57
PFDN2-202ENST00000468311 PEG3Q9GZU2 1588 aa43.55■■■■■ 4.56
PFDN2-202ENST00000468311 MROH2BQ7Z745 1585 aa43.49■■■■■ 4.55
PFDN2-202ENST00000468311 BAZ1BQ9UIG0 1483 aaKnown RBP43.37■■■■■ 4.53
PFDN2-202ENST00000468311 WIZO95785 1651 aa42.95■■■■■ 4.47
PFDN2-202ENST00000468311 RSF1Q96T23 1441 aaPredicted RBP42.94■■■■■ 4.46
PFDN2-202ENST00000468311 ERCC6Q03468 1493 aa42.72■■■■■ 4.43
PFDN2-202ENST00000468311 NESP48681 1621 aa42.7■■■■■ 4.43
PFDN2-202ENST00000468311 LAMC3Q9Y6N6 1575 aa42.69■■■■■ 4.42
PFDN2-202ENST00000468311 TOP2AP11388 1531 aaKnown RBP42.59■■■■■ 4.41
PFDN2-202ENST00000468311 CADPSQ9ULU8 1353 aa42.51■■■■■ 4.4
PFDN2-202ENST00000468311 CUX2O14529 1486 aa42.46■■■■■ 4.39
PFDN2-202ENST00000468311 PDS5BQ9NTI5 1447 aa42.44■■■■■ 4.38
PFDN2-202ENST00000468311 CFTRP13569 1480 aa42.21■■■■■ 4.35
PFDN2-202ENST00000468311 THOC2Q8NI27 1593 aaKnown RBP42.18■■■■■ 4.34
PFDN2-202ENST00000468311 KIF21AQ7Z4S6 1674 aa42.17■■■■■ 4.34
PFDN2-202ENST00000468311 CCDC88BA6NC98 1476 aa42.05■■■■■ 4.32
PFDN2-202ENST00000468311 FANCD2Q9BXW9 1451 aa41.98■■■■■ 4.31
PFDN2-202ENST00000468311 MRC2Q9UBG0 1479 aa41.98■■■■■ 4.31
PFDN2-202ENST00000468311 CEP164Q9UPV0 1460 aa41.98■■■■■ 4.31
PFDN2-202ENST00000468311 WDR62O43379 1518 aa41.85■■■■■ 4.29
PFDN2-202ENST00000468311 PRDM2Q13029 1718 aa41.75■■■■■ 4.27
PFDN2-202ENST00000468311 URB2Q14146 1524 aaKnown RBP41.55■■■■■ 4.24
PFDN2-202ENST00000468311 SUPT5HO00267 1087 aaKnown RBP41.5■■■■■ 4.23
PFDN2-202ENST00000468311 DNAJC5Q9H3Z4 198 aa41.44■■■■■ 4.22
PFDN2-202ENST00000468311 ABCC8Q09428 1581 aa41.35■■■■■ 4.21
PFDN2-202ENST00000468311 TOPBP1Q92547 1522 aa41.27■■■■■ 4.2
PFDN2-202ENST00000468311 DNMBPQ6XZF7 1577 aa41.21■■■■■ 4.19
PFDN2-202ENST00000468311 IFT140Q96RY7 1462 aa41.13■■■■■ 4.17
PFDN2-202ENST00000468311 POLA1P09884 1462 aaPredicted RBP40.9■■■■■ 4.14
PFDN2-202ENST00000468311 ZNF608Q9ULD9 1512 aaPredicted RBP40.87■■■■■ 4.13
PFDN2-202ENST00000468311 TARBP1Q13395 1621 aaKnown RBP40.83■■■■■ 4.13
PFDN2-202ENST00000468311 CUX1P39880 1505 aa40.83■■■■■ 4.13
PFDN2-202ENST00000468311 FGD5Q6ZNL6 1462 aa40.74■■■■■ 4.11
PFDN2-202ENST00000468311 SOGA1O94964 1423 aa40.74■■■■■ 4.11
PFDN2-202ENST00000468311 EIF4G3O43432 1585 aaKnown RBP40.71■■■■■ 4.11
PFDN2-202ENST00000468311 RAD54L2Q9Y4B4 1467 aa40.66■■■■■ 4.1
PFDN2-202ENST00000468311 WDR97A6NE52 1622 aa40.62■■■■■ 4.09
PFDN2-202ENST00000468311 AQRO60306 1485 aaKnown RBP eCLIP40.61■■■■■ 4.09
PFDN2-202ENST00000468311 OSCARQ8IYS5 282 aa40.6■■■■■ 4.09
PFDN2-202ENST00000468311 WRNQ14191 1432 aaPredicted RBP eCLIP40.5■■■■■ 4.07
PFDN2-202ENST00000468311 TDRD9Q8NDG6 1382 aaKnown RBP40.49■■■■■ 4.07
PFDN2-202ENST00000468311 TOP2BQ02880 1626 aa40.43■■■■■ 4.06
PFDN2-202ENST00000468311 BIVM-ERCC5R4GMW8 1640 aa40.42■■■■■ 4.06
PFDN2-202ENST00000468311 ABCA10Q8WWZ4 1543 aa40.4■■■■■ 4.06
PFDN2-202ENST00000468311 SYNJ1O43426 1573 aa40.34■■■■■ 4.05
PFDN2-202ENST00000468311 GRIN2BQ13224 1484 aa40.33■■■■■ 4.05
PFDN2-202ENST00000468311 MAGI1Q96QZ7 1491 aaPredicted RBP40.27■■■■■ 4.04
PFDN2-202ENST00000468311 GAPVD1Q14C86 1478 aa40.26■■■■■ 4.04
PFDN2-202ENST00000468311 SNAPC4Q5SXM2 1469 aa40.25■■■■■ 4.03
PFDN2-202ENST00000468311 ABCA5Q8WWZ7 1642 aa40.21■■■■■ 4.03
PFDN2-202ENST00000468311 CHD1O14646 1710 aa40.18■■■■■ 4.02
PFDN2-202ENST00000468311 FBLN2P98095 1184 aa40.15■■■■■ 4.02
PFDN2-202ENST00000468311 PBRM1Q86U86 1689 aa40.11■■■■■ 4.01
PFDN2-202ENST00000468311 SYNJ2O15056 1496 aa40.1■■■■■ 4.01
PFDN2-202ENST00000468311 CHMP7Q8WUX9 453 aaPredicted RBP40.07■■■■■ 4.01
PFDN2-202ENST00000468311 ERICH3Q5RHP9 1530 aa39.92■■■■□ 3.98
PFDN2-202ENST00000468311 ARHGEF11O15085 1522 aa39.91■■■■□ 3.98
PFDN2-202ENST00000468311 RIMBP3CA6NJZ7 1639 aa39.9■■■■□ 3.98
PFDN2-202ENST00000468311 RIMBP3BA6NNM3 1639 aa39.9■■■■□ 3.98
PFDN2-202ENST00000468311 RIMBP3Q9UFD9 1639 aa39.9■■■■□ 3.98
PFDN2-202ENST00000468311 CLASP1Q7Z460 1538 aa39.86■■■■□ 3.97
PFDN2-202ENST00000468311 ADAMTS12P58397 1594 aa39.84■■■■□ 3.97
PFDN2-202ENST00000468311 FHAD1B1AJZ9 1412 aa39.82■■■■□ 3.97
PFDN2-202ENST00000468311 TRIM41Q8WV44 630 aa39.82■■■■□ 3.97
PFDN2-202ENST00000468311 GRIN2AQ12879 1464 aa39.79■■■■□ 3.96
PFDN2-202ENST00000468311 KIF27Q86VH2 1401 aa39.71■■■■□ 3.95
PFDN2-202ENST00000468311 NUP160Q12769 1436 aa39.65■■■■□ 3.94
PFDN2-202ENST00000468311 ARAP1Q96P48 1450 aa39.56■■■■□ 3.92
PFDN2-202ENST00000468311 IGF1RP08069 1367 aa39.56■■■■□ 3.92
PFDN2-202ENST00000468311 CEP170Q5SW79 1584 aa39.55■■■■□ 3.92
PFDN2-202ENST00000468311 CYB5RLQ6IPT4 315 aa39.51■■■■□ 3.92
PFDN2-202ENST00000468311 CUL7Q14999 1698 aa39.46■■■■□ 3.91
PFDN2-202ENST00000468311 SHROOM2Q13796 1616 aa39.35■■■■□ 3.89
PFDN2-202ENST00000468311 CARMIL1Q5VZK9 1371 aa39.32■■■■□ 3.88
PFDN2-202ENST00000468311 RUSC2Q8N2Y8 1516 aa39.27■■■■□ 3.88
PFDN2-202ENST00000468311 JPH4Q96JJ6 628 aa39.21■■■■□ 3.87
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms