RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 NISCHQ9Y2I1 1504 aa19.12■□□□□ 0.65
BRCA1-208ENST00000468300 CCDC180Q9P1Z9 1646 aa16.71■□□□□ 0.27
BRCA1-208ENST00000468300 ZCCHC6Q5VYS8 1495 aaKnown RBP16.07■□□□□ 0.16
BRCA1-208ENST00000468300 DCAF1Q9Y4B6 1507 aa15.82■□□□□ 0.12
BRCA1-208ENST00000468300 ABCC9O60706 1549 aa15.78■□□□□ 0.12
BRCA1-208ENST00000468300 MYO15BQ96JP2 1530 aa15.65■□□□□ 0.1
BRCA1-208ENST00000468300 DCAF8L2P0C7V8 631 aa15.61■□□□□ 0.09
BRCA1-208ENST00000468300 NACADO15069 1562 aa15.53■□□□□ 0.08
BRCA1-208ENST00000468300 SHROOM4Q9ULL8 1493 aa15.47■□□□□ 0.07
BRCA1-208ENST00000468300 RB1CC1Q8TDY2 1594 aa15.4■□□□□ 0.06
BRCA1-208ENST00000468300 SCRIBQ14160 1630 aa15.33■□□□□ 0.05
BRCA1-208ENST00000468300 UNC13AQ9UPW8 1703 aa15.24■□□□□ 0.03
BRCA1-208ENST00000468300 BICRAQ9NZM4 1560 aa15.06■□□□□ 0
BRCA1-208ENST00000468300 CECR2Q9BXF3 1484 aa14.88□□□□□ -0.03
BRCA1-208ENST00000468300 PABPN1Q86U42 306 aaKnown RBP eCLIP14.85□□□□□ -0.03
BRCA1-208ENST00000468300 RSF1Q96T23 1441 aaPredicted RBP14.8□□□□□ -0.04
BRCA1-208ENST00000468300 SUPT5HO00267 1087 aaKnown RBP14.8□□□□□ -0.04
BRCA1-208ENST00000468300 MROH2BQ7Z745 1585 aa14.79□□□□□ -0.04
BRCA1-208ENST00000468300 BAZ1AQ9NRL2 1556 aaPredicted RBP14.73□□□□□ -0.05
BRCA1-208ENST00000468300 SMARCA4P51532 1647 aa14.72□□□□□ -0.05
BRCA1-208ENST00000468300 WIZO95785 1651 aa14.68□□□□□ -0.06
BRCA1-208ENST00000468300 PEG3Q9GZU2 1588 aa14.58□□□□□ -0.08
BRCA1-208ENST00000468300 EIF4G1Q04637 1599 aaKnown RBP14.53□□□□□ -0.08
BRCA1-208ENST00000468300 TOP2AP11388 1531 aaKnown RBP14.48□□□□□ -0.09
BRCA1-208ENST00000468300 ATAD2BQ9ULI0 1458 aa14.47□□□□□ -0.09
BRCA1-208ENST00000468300 SMARCA2P51531 1590 aa14.42□□□□□ -0.1
BRCA1-208ENST00000468300 NCAPD3P42695 1498 aa14.35□□□□□ -0.11
BRCA1-208ENST00000468300 CCDC88BA6NC98 1476 aa14.34□□□□□ -0.11
BRCA1-208ENST00000468300 CC2D2AQ9P2K1 1620 aa14.34□□□□□ -0.11
BRCA1-208ENST00000468300 HMGXB3Q12766 1538 aa14.33□□□□□ -0.12
BRCA1-208ENST00000468300 BAZ1BQ9UIG0 1483 aaKnown RBP14.33□□□□□ -0.12
BRCA1-208ENST00000468300 CHIC1Q5VXU3 224 aa14.22□□□□□ -0.13
BRCA1-208ENST00000468300 DNAJC5BQ9UF47 199 aa14.05□□□□□ -0.16
BRCA1-208ENST00000468300 ABCC8Q09428 1581 aa14.03□□□□□ -0.16
BRCA1-208ENST00000468300 CFTRP13569 1480 aa14.02□□□□□ -0.16
BRCA1-208ENST00000468300 PRDM2Q13029 1718 aa14.01□□□□□ -0.17
BRCA1-208ENST00000468300 CADPSQ9ULU8 1353 aa13.94□□□□□ -0.18
BRCA1-208ENST00000468300 SYNJ1O43426 1573 aa13.92□□□□□ -0.18
BRCA1-208ENST00000468300 TRIM41Q8WV44 630 aa13.9□□□□□ -0.18
BRCA1-208ENST00000468300 NESP48681 1621 aa13.9□□□□□ -0.18
BRCA1-208ENST00000468300 WRNQ14191 1432 aaPredicted RBP eCLIP13.87□□□□□ -0.191e-6■■■■■ 58.5
BRCA1-208ENST00000468300 LAMC3Q9Y6N6 1575 aa13.86□□□□□ -0.19
BRCA1-208ENST00000468300 BIVM-ERCC5R4GMW8 1640 aa13.85□□□□□ -0.19
BRCA1-208ENST00000468300 TOP2BQ02880 1626 aa13.84□□□□□ -0.19
BRCA1-208ENST00000468300 CUX1P39880 1505 aa13.83□□□□□ -0.2
BRCA1-208ENST00000468300 FANCD2Q9BXW9 1451 aa13.79□□□□□ -0.2
BRCA1-208ENST00000468300 KIF21AQ7Z4S6 1674 aa13.76□□□□□ -0.21
BRCA1-208ENST00000468300 SOGA1O94964 1423 aa13.74□□□□□ -0.21
BRCA1-208ENST00000468300 SLC24A1O60721 1099 aa13.74□□□□□ -0.21
BRCA1-208ENST00000468300 RUSC2Q8N2Y8 1516 aa13.73□□□□□ -0.21
BRCA1-208ENST00000468300 CEP164Q9UPV0 1460 aa13.69□□□□□ -0.22
BRCA1-208ENST00000468300 DNMBPQ6XZF7 1577 aa13.68□□□□□ -0.22
BRCA1-208ENST00000468300 URB2Q14146 1524 aaKnown RBP13.68□□□□□ -0.22
BRCA1-208ENST00000468300 PDS5BQ9NTI5 1447 aa13.68□□□□□ -0.22
BRCA1-208ENST00000468300 LOC105371045A0A1W2PR82 267 aa13.67□□□□□ -0.22
BRCA1-208ENST00000468300 TOPBP1Q92547 1522 aa13.67□□□□□ -0.22
BRCA1-208ENST00000468300 FAM9AQ8IZU1 332 aaPredicted RBP13.65□□□□□ -0.22
BRCA1-208ENST00000468300 FGD5Q6ZNL6 1462 aa13.64□□□□□ -0.23
BRCA1-208ENST00000468300 EEA1Q15075 1411 aa13.61□□□□□ -0.23
BRCA1-208ENST00000468300 POLA1P09884 1462 aaPredicted RBP13.6□□□□□ -0.23
BRCA1-208ENST00000468300 WDR97A6NE52 1622 aa13.58□□□□□ -0.23
BRCA1-208ENST00000468300 MRC2Q9UBG0 1479 aa13.56□□□□□ -0.24
BRCA1-208ENST00000468300 RAD54L2Q9Y4B4 1467 aa13.56□□□□□ -0.24
BRCA1-208ENST00000468300 THOC2Q8NI27 1593 aaKnown RBP13.56□□□□□ -0.24
BRCA1-208ENST00000468300 WDR62O43379 1518 aa13.55□□□□□ -0.24
BRCA1-208ENST00000468300 CSRNP3Q8WYN3 585 aa13.54□□□□□ -0.24
BRCA1-208ENST00000468300 ABCA10Q8WWZ4 1543 aa13.53□□□□□ -0.24
BRCA1-208ENST00000468300 KIF21BO75037 1637 aa13.53□□□□□ -0.24
BRCA1-208ENST00000468300 TARBP1Q13395 1621 aaKnown RBP13.53□□□□□ -0.24
BRCA1-208ENST00000468300 CUX2O14529 1486 aa13.5□□□□□ -0.25
BRCA1-208ENST00000468300 KIF27Q86VH2 1401 aa13.49□□□□□ -0.25
BRCA1-208ENST00000468300 PRXQ9BXM0 1461 aa13.48□□□□□ -0.25
BRCA1-208ENST00000468300 ABCA5Q8WWZ7 1642 aa13.48□□□□□ -0.25
BRCA1-208ENST00000468300 ERCC6Q03468 1493 aa13.46□□□□□ -0.25
BRCA1-208ENST00000468300 RAPGEF2Q9Y4G8 1499 aa13.46□□□□□ -0.26
BRCA1-208ENST00000468300 EHMT2Q96KQ7 1210 aa13.45□□□□□ -0.26
BRCA1-208ENST00000468300 IGF1RP08069 1367 aa13.45□□□□□ -0.26
BRCA1-208ENST00000468300 GOLGA3Q08378 1498 aa13.44□□□□□ -0.26
BRCA1-208ENST00000468300 ERICH3Q5RHP9 1530 aa13.43□□□□□ -0.26
BRCA1-208ENST00000468300 TNIKQ9UKE5 1360 aa13.4□□□□□ -0.26
BRCA1-208ENST00000468300 TDRD9Q8NDG6 1382 aaKnown RBP13.38□□□□□ -0.27
BRCA1-208ENST00000468300 IFT140Q96RY7 1462 aa13.37□□□□□ -0.27
BRCA1-208ENST00000468300 PBRM1Q86U86 1689 aa13.37□□□□□ -0.27
BRCA1-208ENST00000468300 ZNF608Q9ULD9 1512 aaPredicted RBP13.36□□□□□ -0.27
BRCA1-208ENST00000468300 GAPVD1Q14C86 1478 aa13.36□□□□□ -0.27
BRCA1-208ENST00000468300 CUL7Q14999 1698 aa13.35□□□□□ -0.27
BRCA1-208ENST00000468300 CEP162Q5TB80 1403 aa13.33□□□□□ -0.27
BRCA1-208ENST00000468300 AQRO60306 1485 aaKnown RBP eCLIP13.33□□□□□ -0.284e-10■■■■■ 36.9
BRCA1-208ENST00000468300 CARMIL1Q5VZK9 1371 aa13.33□□□□□ -0.28
BRCA1-208ENST00000468300 EIF4G3O43432 1585 aaKnown RBP13.32□□□□□ -0.28
BRCA1-208ENST00000468300 UBTFP17480 764 aaKnown RBP13.29□□□□□ -0.28
BRCA1-208ENST00000468300 ADAMTS12P58397 1594 aa13.27□□□□□ -0.28
BRCA1-208ENST00000468300 GRIN2BQ13224 1484 aa13.26□□□□□ -0.29
BRCA1-208ENST00000468300 CTTNBP2Q8WZ74 1663 aa13.23□□□□□ -0.29
BRCA1-208ENST00000468300 CLIP1P30622 1438 aa13.21□□□□□ -0.29
BRCA1-208ENST00000468300 FHAD1B1AJZ9 1412 aa13.21□□□□□ -0.29
BRCA1-208ENST00000468300 SNAPC4Q5SXM2 1469 aa13.2□□□□□ -0.3
BRCA1-208ENST00000468300 ARAP1Q96P48 1450 aa13.19□□□□□ -0.3
BRCA1-208ENST00000468300 ARHGAP35Q9NRY4 1499 aa13.18□□□□□ -0.3
BRCA1-208ENST00000468300 MAGI1Q96QZ7 1491 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms