RNA–Protein interactions for RNA: ENST00000468117.1

TMEM53-207, Transcript of transmembrane protein 53, humanhuman

TSL 3

Gene TMEM53, Length 2,017 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-207ENST00000468117 NISCHQ9Y2I1 1504 aa46.87■■■■■ 5.09
TMEM53-207ENST00000468117 CCDC180Q9P1Z9 1646 aa40.91■■■■■ 4.14
TMEM53-207ENST00000468117 ZCCHC6Q5VYS8 1495 aaKnown RBP39.35■■■■□ 3.89
TMEM53-207ENST00000468117 DCAF8L2P0C7V8 631 aa38.83■■■■□ 3.81
TMEM53-207ENST00000468117 ABCC9O60706 1549 aa38.83■■■■□ 3.81
TMEM53-207ENST00000468117 DCAF1Q9Y4B6 1507 aa38.7■■■■□ 3.79
TMEM53-207ENST00000468117 SHROOM4Q9ULL8 1493 aa38.27■■■■□ 3.72
TMEM53-207ENST00000468117 MYO15BQ96JP2 1530 aa38.25■■■■□ 3.71
TMEM53-207ENST00000468117 NACADO15069 1562 aa38.1■■■■□ 3.69
TMEM53-207ENST00000468117 RB1CC1Q8TDY2 1594 aa37.82■■■■□ 3.64
TMEM53-207ENST00000468117 SCRIBQ14160 1630 aa37.68■■■■□ 3.62
TMEM53-207ENST00000468117 UNC13AQ9UPW8 1703 aa37.18■■■■□ 3.54
TMEM53-207ENST00000468117 SUPT5HO00267 1087 aaKnown RBP36.76■■■■□ 3.48
TMEM53-207ENST00000468117 BICRAQ9NZM4 1560 aa36.72■■■■□ 3.47
TMEM53-207ENST00000468117 PABPN1Q86U42 306 aaKnown RBP eCLIP36.61■■■■□ 3.45
TMEM53-207ENST00000468117 CECR2Q9BXF3 1484 aa36.48■■■■□ 3.43
TMEM53-207ENST00000468117 RSF1Q96T23 1441 aaPredicted RBP36.34■■■■□ 3.41
TMEM53-207ENST00000468117 MROH2BQ7Z745 1585 aa36.24■■■■□ 3.39
TMEM53-207ENST00000468117 BAZ1AQ9NRL2 1556 aaPredicted RBP36.19■■■■□ 3.38
TMEM53-207ENST00000468117 SMARCA4P51532 1647 aa36.08■■■■□ 3.37
TMEM53-207ENST00000468117 WIZO95785 1651 aa35.99■■■■□ 3.35
TMEM53-207ENST00000468117 EIF4G1Q04637 1599 aaKnown RBP35.61■■■■□ 3.29
TMEM53-207ENST00000468117 PEG3Q9GZU2 1588 aa35.6■■■■□ 3.29
TMEM53-207ENST00000468117 TOP2AP11388 1531 aaKnown RBP35.53■■■■□ 3.28
TMEM53-207ENST00000468117 ATAD2BQ9ULI0 1458 aa35.48■■■■□ 3.27
TMEM53-207ENST00000468117 SMARCA2P51531 1590 aa35.44■■■■□ 3.26
TMEM53-207ENST00000468117 BAZ1BQ9UIG0 1483 aaKnown RBP35.29■■■■□ 3.24
TMEM53-207ENST00000468117 CCDC88BA6NC98 1476 aa35.19■■■■□ 3.22
TMEM53-207ENST00000468117 NCAPD3P42695 1498 aa35.16■■■■□ 3.22
TMEM53-207ENST00000468117 CC2D2AQ9P2K1 1620 aa35.13■■■■□ 3.21
TMEM53-207ENST00000468117 HMGXB3Q12766 1538 aa35.12■■■■□ 3.21
TMEM53-207ENST00000468117 CHIC1Q5VXU3 224 aa35.1■■■■□ 3.21
TMEM53-207ENST00000468117 TRIM41Q8WV44 630 aa34.53■■■■□ 3.12
TMEM53-207ENST00000468117 ABCC8Q09428 1581 aa34.49■■■■□ 3.11
TMEM53-207ENST00000468117 CFTRP13569 1480 aa34.38■■■■□ 3.09
TMEM53-207ENST00000468117 DNAJC5BQ9UF47 199 aa34.33■■■■□ 3.09
TMEM53-207ENST00000468117 CADPSQ9ULU8 1353 aa34.27■■■■□ 3.08
TMEM53-207ENST00000468117 PRDM2Q13029 1718 aa34.27■■■■□ 3.08
TMEM53-207ENST00000468117 WRNQ14191 1432 aaPredicted RBP eCLIP34.2■■■■□ 3.07
TMEM53-207ENST00000468117 SYNJ1O43426 1573 aa34.11■■■■□ 3.05
TMEM53-207ENST00000468117 NESP48681 1621 aa34.08■■■■□ 3.05
TMEM53-207ENST00000468117 LAMC3Q9Y6N6 1575 aa34.01■■■■□ 3.03
TMEM53-207ENST00000468117 FAM9AQ8IZU1 332 aaPredicted RBP33.96■■■■□ 3.03
TMEM53-207ENST00000468117 TOP2BQ02880 1626 aa33.95■■■■□ 3.03
TMEM53-207ENST00000468117 BIVM-ERCC5R4GMW8 1640 aa33.92■■■■□ 3.02
TMEM53-207ENST00000468117 FANCD2Q9BXW9 1451 aa33.92■■■■□ 3.02
TMEM53-207ENST00000468117 CUX1P39880 1505 aa33.89■■■■□ 3.02
TMEM53-207ENST00000468117 LOC105371045A0A1W2PR82 267 aa33.81■■■■□ 3
TMEM53-207ENST00000468117 SOGA1O94964 1423 aa33.78■■■■□ 3
TMEM53-207ENST00000468117 PDS5BQ9NTI5 1447 aa33.73■■■□□ 2.99
TMEM53-207ENST00000468117 CEP164Q9UPV0 1460 aa33.71■■■□□ 2.99
TMEM53-207ENST00000468117 KIF21AQ7Z4S6 1674 aa33.69■■■□□ 2.98
TMEM53-207ENST00000468117 RUSC2Q8N2Y8 1516 aa33.69■■■□□ 2.98
TMEM53-207ENST00000468117 EEA1Q15075 1411 aa33.6■■■□□ 2.97
TMEM53-207ENST00000468117 DNMBPQ6XZF7 1577 aa33.59■■■□□ 2.97
TMEM53-207ENST00000468117 TOPBP1Q92547 1522 aa33.54■■■□□ 2.96
TMEM53-207ENST00000468117 EHMT2Q96KQ7 1210 aa33.54■■■□□ 2.96
TMEM53-207ENST00000468117 FGD5Q6ZNL6 1462 aa33.53■■■□□ 2.96
TMEM53-207ENST00000468117 URB2Q14146 1524 aaKnown RBP33.51■■■□□ 2.96
TMEM53-207ENST00000468117 CSRNP3Q8WYN3 585 aa33.48■■■□□ 2.95
TMEM53-207ENST00000468117 POLA1P09884 1462 aaPredicted RBP33.38■■■□□ 2.93
TMEM53-207ENST00000468117 KIF27Q86VH2 1401 aa33.33■■■□□ 2.93
TMEM53-207ENST00000468117 MRC2Q9UBG0 1479 aa33.31■■■□□ 2.92
TMEM53-207ENST00000468117 RAD54L2Q9Y4B4 1467 aa33.3■■■□□ 2.92
TMEM53-207ENST00000468117 CUX2O14529 1486 aa33.29■■■□□ 2.92
TMEM53-207ENST00000468117 ERCC6Q03468 1493 aa33.28■■■□□ 2.92
TMEM53-207ENST00000468117 KIF21BO75037 1637 aa33.23■■■□□ 2.91
TMEM53-207ENST00000468117 ABCA10Q8WWZ4 1543 aa33.2■■■□□ 2.91
TMEM53-207ENST00000468117 GOLGA3Q08378 1498 aa33.18■■■□□ 2.9
TMEM53-207ENST00000468117 WDR97A6NE52 1622 aa33.15■■■□□ 2.9
TMEM53-207ENST00000468117 WDR62O43379 1518 aa33.15■■■□□ 2.9
TMEM53-207ENST00000468117 THOC2Q8NI27 1593 aaKnown RBP33.11■■■□□ 2.89
TMEM53-207ENST00000468117 RAPGEF2Q9Y4G8 1499 aa33.1■■■□□ 2.89
TMEM53-207ENST00000468117 UBTFP17480 764 aaKnown RBP33.09■■■□□ 2.89
TMEM53-207ENST00000468117 PRXQ9BXM0 1461 aa33.09■■■□□ 2.89
TMEM53-207ENST00000468117 TARBP1Q13395 1621 aaKnown RBP33.07■■■□□ 2.88
TMEM53-207ENST00000468117 IGF1RP08069 1367 aa33.05■■■□□ 2.88
TMEM53-207ENST00000468117 TNIKQ9UKE5 1360 aa33.05■■■□□ 2.88
TMEM53-207ENST00000468117 ERICH3Q5RHP9 1530 aa33.01■■■□□ 2.88
TMEM53-207ENST00000468117 TDRD9Q8NDG6 1382 aaKnown RBP32.98■■■□□ 2.87
TMEM53-207ENST00000468117 ABCA5Q8WWZ7 1642 aa32.97■■■□□ 2.87
TMEM53-207ENST00000468117 CEP162Q5TB80 1403 aa32.91■■■□□ 2.86
TMEM53-207ENST00000468117 GAPVD1Q14C86 1478 aa32.89■■■□□ 2.86
TMEM53-207ENST00000468117 CARMIL1Q5VZK9 1371 aa32.89■■■□□ 2.86
TMEM53-207ENST00000468117 IFT140Q96RY7 1462 aa32.88■■■□□ 2.85
TMEM53-207ENST00000468117 CUL7Q14999 1698 aa32.82■■■□□ 2.84
TMEM53-207ENST00000468117 AQRO60306 1485 aaKnown RBP eCLIP32.79■■■□□ 2.84
TMEM53-207ENST00000468117 PBRM1Q86U86 1689 aa32.77■■■□□ 2.84
TMEM53-207ENST00000468117 ZNF608Q9ULD9 1512 aaPredicted RBP32.77■■■□□ 2.84
TMEM53-207ENST00000468117 CLIP1P30622 1438 aa32.67■■■□□ 2.82
TMEM53-207ENST00000468117 EIF4G3O43432 1585 aaKnown RBP32.66■■■□□ 2.82
TMEM53-207ENST00000468117 RANGAP1P46060 587 aaPredicted RBP32.65■■■□□ 2.82
TMEM53-207ENST00000468117 GRIN2BQ13224 1484 aa32.63■■■□□ 2.81
TMEM53-207ENST00000468117 ADAMTS12P58397 1594 aa32.54■■■□□ 2.8
TMEM53-207ENST00000468117 FHAD1B1AJZ9 1412 aa32.51■■■□□ 2.79
TMEM53-207ENST00000468117 CTTNBP2Q8WZ74 1663 aa32.5■■■□□ 2.79
TMEM53-207ENST00000468117 SNAPC4Q5SXM2 1469 aa32.46■■■□□ 2.79
TMEM53-207ENST00000468117 ARHGAP35Q9NRY4 1499 aa32.38■■■□□ 2.77
TMEM53-207ENST00000468117 ARAP1Q96P48 1450 aa32.37■■■□□ 2.77
TMEM53-207ENST00000468117 MAGI1Q96QZ7 1491 aaPredicted RBP32.36■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms