RNA–Protein interactions for RNA: ENST00000468027.5

PTMA-211, Transcript of prothymosin alpha, humanhuman

TSL 1 (best)

Gene PTMA, Length 621 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTMA-211ENST00000468027 NISCHQ9Y2I1 1504 aa32.1■■■□□ 2.73
PTMA-211ENST00000468027 CCDC180Q9P1Z9 1646 aa28.67■■■□□ 2.18
PTMA-211ENST00000468027 ABCC9O60706 1549 aa27.94■■■□□ 2.06
PTMA-211ENST00000468027 RB1CC1Q8TDY2 1594 aa26.91■■□□□ 1.9
PTMA-211ENST00000468027 NACADO15069 1562 aa26.88■■□□□ 1.89
PTMA-211ENST00000468027 MYO15BQ96JP2 1530 aa26.75■■□□□ 1.87
PTMA-211ENST00000468027 ZCCHC6Q5VYS8 1495 aaKnown RBP26.74■■□□□ 1.87
PTMA-211ENST00000468027 DCAF1Q9Y4B6 1507 aa26.6■■□□□ 1.85
PTMA-211ENST00000468027 UNC13AQ9UPW8 1703 aa26.56■■□□□ 1.84
PTMA-211ENST00000468027 DCAF8L2P0C7V8 631 aa26.56■■□□□ 1.84
PTMA-211ENST00000468027 BICRAQ9NZM4 1560 aa26.23■■□□□ 1.79
PTMA-211ENST00000468027 SCRIBQ14160 1630 aa26.03■■□□□ 1.76
PTMA-211ENST00000468027 PABPN1Q86U42 306 aaKnown RBP eCLIP26.03■■□□□ 1.76
PTMA-211ENST00000468027 SHROOM4Q9ULL8 1493 aa25.84■■□□□ 1.73
PTMA-211ENST00000468027 DNAJC5BQ9UF47 199 aa25.78■■□□□ 1.72
PTMA-211ENST00000468027 EIF4G1Q04637 1599 aaKnown RBP25.45■■□□□ 1.66
PTMA-211ENST00000468027 CC2D2AQ9P2K1 1620 aa25.38■■□□□ 1.65
PTMA-211ENST00000468027 CECR2Q9BXF3 1484 aa25.12■■□□□ 1.61
PTMA-211ENST00000468027 SMARCA4P51532 1647 aa24.96■■□□□ 1.59
PTMA-211ENST00000468027 BAZ1AQ9NRL2 1556 aaPredicted RBP24.85■■□□□ 1.57
PTMA-211ENST00000468027 NCAPD3P42695 1498 aa24.79■■□□□ 1.56
PTMA-211ENST00000468027 ATAD2BQ9ULI0 1458 aa24.78■■□□□ 1.56
PTMA-211ENST00000468027 PEG3Q9GZU2 1588 aa24.76■■□□□ 1.55
PTMA-211ENST00000468027 SMARCA2P51531 1590 aa24.74■■□□□ 1.55
PTMA-211ENST00000468027 MROH2BQ7Z745 1585 aa24.74■■□□□ 1.55
PTMA-211ENST00000468027 HMGXB3Q12766 1538 aa24.7■■□□□ 1.54
PTMA-211ENST00000468027 WIZO95785 1651 aa24.53■■□□□ 1.52
PTMA-211ENST00000468027 BAZ1BQ9UIG0 1483 aaKnown RBP24.52■■□□□ 1.52
PTMA-211ENST00000468027 RSF1Q96T23 1441 aaPredicted RBP24.39■■□□□ 1.5
PTMA-211ENST00000468027 NESP48681 1621 aa24.22■■□□□ 1.47
PTMA-211ENST00000468027 TOP2AP11388 1531 aaKnown RBP24.2■■□□□ 1.46
PTMA-211ENST00000468027 LAMC3Q9Y6N6 1575 aa24.17■■□□□ 1.46
PTMA-211ENST00000468027 KIF21AQ7Z4S6 1674 aa24.05■■□□□ 1.44
PTMA-211ENST00000468027 ERCC6Q03468 1493 aa24.01■■□□□ 1.43
PTMA-211ENST00000468027 CADPSQ9ULU8 1353 aa24.01■■□□□ 1.43
PTMA-211ENST00000468027 THOC2Q8NI27 1593 aaKnown RBP23.96■■□□□ 1.43
PTMA-211ENST00000468027 PRDM2Q13029 1718 aa23.93■■□□□ 1.42
PTMA-211ENST00000468027 CFTRP13569 1480 aa23.9■■□□□ 1.42
PTMA-211ENST00000468027 CCDC88BA6NC98 1476 aa23.89■■□□□ 1.42
PTMA-211ENST00000468027 CUX2O14529 1486 aa23.89■■□□□ 1.42
PTMA-211ENST00000468027 PDS5BQ9NTI5 1447 aa23.89■■□□□ 1.41
PTMA-211ENST00000468027 FANCD2Q9BXW9 1451 aa23.74■■□□□ 1.39
PTMA-211ENST00000468027 WDR62O43379 1518 aa23.7■■□□□ 1.38
PTMA-211ENST00000468027 MRC2Q9UBG0 1479 aa23.7■■□□□ 1.38
PTMA-211ENST00000468027 CEP164Q9UPV0 1460 aa23.7■■□□□ 1.38
PTMA-211ENST00000468027 URB2Q14146 1524 aaKnown RBP23.57■■□□□ 1.36
PTMA-211ENST00000468027 SUPT5HO00267 1087 aaKnown RBP23.52■■□□□ 1.36
PTMA-211ENST00000468027 TOPBP1Q92547 1522 aa23.39■■□□□ 1.34
PTMA-211ENST00000468027 DNMBPQ6XZF7 1577 aa23.38■■□□□ 1.33
PTMA-211ENST00000468027 ABCC8Q09428 1581 aa23.34■■□□□ 1.33
PTMA-211ENST00000468027 TARBP1Q13395 1621 aaKnown RBP23.24■■□□□ 1.31
PTMA-211ENST00000468027 CUX1P39880 1505 aa23.22■■□□□ 1.31
PTMA-211ENST00000468027 DNAJC5Q9H3Z4 198 aa23.21■■□□□ 1.31
PTMA-211ENST00000468027 IFT140Q96RY7 1462 aa23.21■■□□□ 1.31
PTMA-211ENST00000468027 POLA1P09884 1462 aaPredicted RBP23.18■■□□□ 1.3
PTMA-211ENST00000468027 ZNF608Q9ULD9 1512 aaPredicted RBP23.17■■□□□ 1.3
PTMA-211ENST00000468027 EIF4G3O43432 1585 aaKnown RBP23.12■■□□□ 1.29
PTMA-211ENST00000468027 FGD5Q6ZNL6 1462 aa23.1■■□□□ 1.29
PTMA-211ENST00000468027 WDR97A6NE52 1622 aa23.09■■□□□ 1.29
PTMA-211ENST00000468027 BIVM-ERCC5R4GMW8 1640 aa23.07■■□□□ 1.28
PTMA-211ENST00000468027 RAD54L2Q9Y4B4 1467 aa23.06■■□□□ 1.28
PTMA-211ENST00000468027 TOP2BQ02880 1626 aa23.02■■□□□ 1.28
PTMA-211ENST00000468027 SOGA1O94964 1423 aa23.01■■□□□ 1.27
PTMA-211ENST00000468027 SYNJ1O43426 1573 aa23.01■■□□□ 1.27
PTMA-211ENST00000468027 AQRO60306 1485 aaKnown RBP eCLIP22.98■■□□□ 1.274e-20■■■■■ 37.2
PTMA-211ENST00000468027 WRNQ14191 1432 aaPredicted RBP eCLIP22.94■■□□□ 1.26
PTMA-211ENST00000468027 CHD1O14646 1710 aa22.91■■□□□ 1.26
PTMA-211ENST00000468027 ABCA10Q8WWZ4 1543 aa22.9■■□□□ 1.26
PTMA-211ENST00000468027 PBRM1Q86U86 1689 aa22.9■■□□□ 1.26
PTMA-211ENST00000468027 ABCA5Q8WWZ7 1642 aa22.89■■□□□ 1.25
PTMA-211ENST00000468027 TDRD9Q8NDG6 1382 aaKnown RBP22.89■■□□□ 1.25
PTMA-211ENST00000468027 OSCARQ8IYS5 282 aa22.78■■□□□ 1.24
PTMA-211ENST00000468027 GAPVD1Q14C86 1478 aa22.78■■□□□ 1.24
PTMA-211ENST00000468027 GRIN2BQ13224 1484 aa22.77■■□□□ 1.24
PTMA-211ENST00000468027 SNAPC4Q5SXM2 1469 aa22.77■■□□□ 1.24
PTMA-211ENST00000468027 MAGI1Q96QZ7 1491 aaPredicted RBP22.75■■□□□ 1.23
PTMA-211ENST00000468027 SYNJ2O15056 1496 aa22.66■■□□□ 1.22
PTMA-211ENST00000468027 ADAMTS12P58397 1594 aa22.63■■□□□ 1.21
PTMA-211ENST00000468027 ERICH3Q5RHP9 1530 aa22.62■■□□□ 1.21
PTMA-211ENST00000468027 CLASP1Q7Z460 1538 aa22.62■■□□□ 1.21
PTMA-211ENST00000468027 RIMBP3CA6NJZ7 1639 aa22.6■■□□□ 1.21
PTMA-211ENST00000468027 RIMBP3BA6NNM3 1639 aa22.6■■□□□ 1.21
PTMA-211ENST00000468027 RIMBP3Q9UFD9 1639 aa22.6■■□□□ 1.21
PTMA-211ENST00000468027 FBLN2P98095 1184 aa22.55■■□□□ 1.2
PTMA-211ENST00000468027 ARHGEF11O15085 1522 aa22.53■■□□□ 1.2
PTMA-211ENST00000468027 CHMP7Q8WUX9 453 aaPredicted RBP22.52■■□□□ 1.2
PTMA-211ENST00000468027 GRIN2AQ12879 1464 aa22.52■■□□□ 1.2
PTMA-211ENST00000468027 FHAD1B1AJZ9 1412 aa22.49■■□□□ 1.19
PTMA-211ENST00000468027 CEP170Q5SW79 1584 aa22.47■■□□□ 1.19
PTMA-211ENST00000468027 NUP160Q12769 1436 aa22.44■■□□□ 1.18
PTMA-211ENST00000468027 CUL7Q14999 1698 aa22.43■■□□□ 1.18
PTMA-211ENST00000468027 KIF27Q86VH2 1401 aa22.43■■□□□ 1.18
PTMA-211ENST00000468027 IGF1RP08069 1367 aa22.42■■□□□ 1.18
PTMA-211ENST00000468027 SHROOM2Q13796 1616 aa22.39■■□□□ 1.17
PTMA-211ENST00000468027 ARAP1Q96P48 1450 aa22.36■■□□□ 1.17
PTMA-211ENST00000468027 RUSC2Q8N2Y8 1516 aa22.33■■□□□ 1.17
PTMA-211ENST00000468027 ERCC6L2Q5T890 1561 aa22.29■■□□□ 1.16
PTMA-211ENST00000468027 TRIM41Q8WV44 630 aa22.28■■□□□ 1.16
PTMA-211ENST00000468027 CARMIL1Q5VZK9 1371 aa22.23■■□□□ 1.15
PTMA-211ENST00000468027 CYB5RLQ6IPT4 315 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms