RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 NISCHQ9Y2I1 1504 aa47.11■■■■■ 5.13
COL7A1-207ENST00000467985 CCDC180Q9P1Z9 1646 aa42.15■■■■■ 4.34
COL7A1-207ENST00000467985 ABCC9O60706 1549 aa41.63■■■■■ 4.25
COL7A1-207ENST00000467985 RB1CC1Q8TDY2 1594 aa39.91■■■■□ 3.98
COL7A1-207ENST00000467985 NACADO15069 1562 aa39.74■■■■□ 3.95
COL7A1-207ENST00000467985 DCAF8L2P0C7V8 631 aa39.53■■■■□ 3.92
COL7A1-207ENST00000467985 MYO15BQ96JP2 1530 aa39.37■■■■□ 3.89
COL7A1-207ENST00000467985 ZCCHC6Q5VYS8 1495 aaKnown RBP39.13■■■■□ 3.85
COL7A1-207ENST00000467985 DCAF1Q9Y4B6 1507 aa39■■■■□ 3.83
COL7A1-207ENST00000467985 UNC13AQ9UPW8 1703 aa38.92■■■■□ 3.82
COL7A1-207ENST00000467985 PABPN1Q86U42 306 aaKnown RBP eCLIP38.8■■■■□ 3.83e-6■■■□□ 16.9
COL7A1-207ENST00000467985 BICRAQ9NZM4 1560 aa38.65■■■■□ 3.78
COL7A1-207ENST00000467985 DNAJC5BQ9UF47 199 aa38.61■■■■□ 3.77
COL7A1-207ENST00000467985 SCRIBQ14160 1630 aa38.34■■■■□ 3.73
COL7A1-207ENST00000467985 SHROOM4Q9ULL8 1493 aa38.32■■■■□ 3.72
COL7A1-207ENST00000467985 EIF4G1Q04637 1599 aaKnown RBP37.69■■■■□ 3.62
COL7A1-207ENST00000467985 CC2D2AQ9P2K1 1620 aa37.65■■■■□ 3.62
COL7A1-207ENST00000467985 CECR2Q9BXF3 1484 aa37.5■■■■□ 3.59
COL7A1-207ENST00000467985 NCAPD3P42695 1498 aa36.66■■■■□ 3.46
COL7A1-207ENST00000467985 SMARCA4P51532 1647 aa36.66■■■■□ 3.46
COL7A1-207ENST00000467985 ATAD2BQ9ULI0 1458 aa36.58■■■■□ 3.45
COL7A1-207ENST00000467985 BAZ1AQ9NRL2 1556 aaPredicted RBP36.57■■■■□ 3.45
COL7A1-207ENST00000467985 SMARCA2P51531 1590 aa36.56■■■■□ 3.44
COL7A1-207ENST00000467985 HMGXB3Q12766 1538 aa36.44■■■■□ 3.42
COL7A1-207ENST00000467985 PEG3Q9GZU2 1588 aa36.34■■■■□ 3.41
COL7A1-207ENST00000467985 BAZ1BQ9UIG0 1483 aaKnown RBP36.27■■■■□ 3.4
COL7A1-207ENST00000467985 MROH2BQ7Z745 1585 aa36.27■■■■□ 3.4
COL7A1-207ENST00000467985 ERCC6Q03468 1493 aa35.98■■■■□ 3.35
COL7A1-207ENST00000467985 NESP48681 1621 aa35.86■■■■□ 3.33
COL7A1-207ENST00000467985 WIZO95785 1651 aa35.84■■■■□ 3.33
COL7A1-207ENST00000467985 LAMC3Q9Y6N6 1575 aa35.79■■■■□ 3.32
COL7A1-207ENST00000467985 CUX2O14529 1486 aa35.79■■■■□ 3.32
COL7A1-207ENST00000467985 RSF1Q96T23 1441 aaPredicted RBP35.69■■■■□ 3.3
COL7A1-207ENST00000467985 PDS5BQ9NTI5 1447 aa35.57■■■■□ 3.29
COL7A1-207ENST00000467985 CADPSQ9ULU8 1353 aa35.56■■■■□ 3.28
COL7A1-207ENST00000467985 TOP2AP11388 1531 aaKnown RBP35.48■■■■□ 3.27
COL7A1-207ENST00000467985 THOC2Q8NI27 1593 aaKnown RBP35.46■■■■□ 3.27
COL7A1-207ENST00000467985 KIF21AQ7Z4S6 1674 aa35.45■■■■□ 3.27
COL7A1-207ENST00000467985 CFTRP13569 1480 aa35.24■■■■□ 3.23
COL7A1-207ENST00000467985 DNAJC5Q9H3Z4 198 aa35.24■■■■□ 3.23
COL7A1-207ENST00000467985 MRC2Q9UBG0 1479 aa35.21■■■■□ 3.23
COL7A1-207ENST00000467985 CEP164Q9UPV0 1460 aa35.16■■■■□ 3.22
COL7A1-207ENST00000467985 FANCD2Q9BXW9 1451 aa35.14■■■■□ 3.22
COL7A1-207ENST00000467985 WDR62O43379 1518 aa35.11■■■■□ 3.21
COL7A1-207ENST00000467985 CCDC88BA6NC98 1476 aa35.04■■■■□ 3.2
COL7A1-207ENST00000467985 PRDM2Q13029 1718 aa34.95■■■■□ 3.19
COL7A1-207ENST00000467985 URB2Q14146 1524 aaKnown RBP34.8■■■■□ 3.16
COL7A1-207ENST00000467985 ABCC8Q09428 1581 aa34.56■■■■□ 3.12
COL7A1-207ENST00000467985 TOPBP1Q92547 1522 aa34.52■■■■□ 3.12
COL7A1-207ENST00000467985 DNMBPQ6XZF7 1577 aa34.46■■■■□ 3.11
COL7A1-207ENST00000467985 IFT140Q96RY7 1462 aa34.46■■■■□ 3.11
COL7A1-207ENST00000467985 SUPT5HO00267 1087 aaKnown RBP34.4■■■■□ 3.1
COL7A1-207ENST00000467985 ZNF608Q9ULD9 1512 aaPredicted RBP34.28■■■■□ 3.08
COL7A1-207ENST00000467985 OSCARQ8IYS5 282 aa34.21■■■■□ 3.07
COL7A1-207ENST00000467985 POLA1P09884 1462 aaPredicted RBP34.2■■■■□ 3.06
COL7A1-207ENST00000467985 TARBP1Q13395 1621 aaKnown RBP34.19■■■■□ 3.06
COL7A1-207ENST00000467985 EIF4G3O43432 1585 aaKnown RBP34.15■■■■□ 3.06
COL7A1-207ENST00000467985 SOGA1O94964 1423 aa34.06■■■■□ 3.04
COL7A1-207ENST00000467985 CUX1P39880 1505 aa34.06■■■■□ 3.04
COL7A1-207ENST00000467985 AQRO60306 1485 aaKnown RBP eCLIP34.03■■■■□ 3.04
COL7A1-207ENST00000467985 FGD5Q6ZNL6 1462 aa34.03■■■■□ 3.04
COL7A1-207ENST00000467985 RAD54L2Q9Y4B4 1467 aa34.01■■■■□ 3.04
COL7A1-207ENST00000467985 WDR97A6NE52 1622 aa33.96■■■■□ 3.03
COL7A1-207ENST00000467985 TDRD9Q8NDG6 1382 aaKnown RBP33.9■■■■□ 3.02
COL7A1-207ENST00000467985 TRIM41Q8WV44 630 aa33.82■■■■□ 3
COL7A1-207ENST00000467985 CHD1O14646 1710 aa33.8■■■■□ 3
COL7A1-207ENST00000467985 FBLN2P98095 1184 aa33.75■■■□□ 2.99
COL7A1-207ENST00000467985 GRIN2BQ13224 1484 aa33.74■■■□□ 2.99
COL7A1-207ENST00000467985 SNAPC4Q5SXM2 1469 aa33.72■■■□□ 2.99
COL7A1-207ENST00000467985 MAGI1Q96QZ7 1491 aaPredicted RBP33.71■■■□□ 2.99
COL7A1-207ENST00000467985 ABCA10Q8WWZ4 1543 aa33.7■■■□□ 2.99
COL7A1-207ENST00000467985 WRNQ14191 1432 aaPredicted RBP eCLIP33.69■■■□□ 2.98
COL7A1-207ENST00000467985 RIMBP3CA6NJZ7 1639 aa33.68■■■□□ 2.98
COL7A1-207ENST00000467985 RIMBP3BA6NNM3 1639 aa33.68■■■□□ 2.98
COL7A1-207ENST00000467985 TOP2BQ02880 1626 aa33.68■■■□□ 2.98
COL7A1-207ENST00000467985 RIMBP3Q9UFD9 1639 aa33.68■■■□□ 2.98
COL7A1-207ENST00000467985 BIVM-ERCC5R4GMW8 1640 aa33.67■■■□□ 2.98
COL7A1-207ENST00000467985 GAPVD1Q14C86 1478 aa33.66■■■□□ 2.98
COL7A1-207ENST00000467985 ARHGEF11O15085 1522 aa33.63■■■□□ 2.97
COL7A1-207ENST00000467985 ABCA5Q8WWZ7 1642 aa33.61■■■□□ 2.97
COL7A1-207ENST00000467985 CHMP7Q8WUX9 453 aaPredicted RBP33.6■■■□□ 2.97
COL7A1-207ENST00000467985 PBRM1Q86U86 1689 aa33.6■■■□□ 2.97
COL7A1-207ENST00000467985 SYNJ1O43426 1573 aa33.6■■■□□ 2.97
COL7A1-207ENST00000467985 SYNJ2O15056 1496 aa33.57■■■□□ 2.97
COL7A1-207ENST00000467985 CLASP1Q7Z460 1538 aa33.44■■■□□ 2.94
COL7A1-207ENST00000467985 CYB5RLQ6IPT4 315 aa33.33■■■□□ 2.93
COL7A1-207ENST00000467985 ERICH3Q5RHP9 1530 aa33.32■■■□□ 2.92
COL7A1-207ENST00000467985 ADAMTS12P58397 1594 aa33.31■■■□□ 2.92
COL7A1-207ENST00000467985 ARAP1Q96P48 1450 aa33.31■■■□□ 2.92
COL7A1-207ENST00000467985 GRIN2AQ12879 1464 aa33.28■■■□□ 2.92
COL7A1-207ENST00000467985 FHAD1B1AJZ9 1412 aa33.27■■■□□ 2.92
COL7A1-207ENST00000467985 NUP160Q12769 1436 aa33.15■■■□□ 2.9
COL7A1-207ENST00000467985 CEP170Q5SW79 1584 aa33.11■■■□□ 2.89
COL7A1-207ENST00000467985 KIF27Q86VH2 1401 aa33.04■■■□□ 2.88
COL7A1-207ENST00000467985 SHROOM2Q13796 1616 aa32.97■■■□□ 2.87
COL7A1-207ENST00000467985 IGF1RP08069 1367 aa32.95■■■□□ 2.86
COL7A1-207ENST00000467985 CUL7Q14999 1698 aa32.92■■■□□ 2.86
COL7A1-207ENST00000467985 ERCC6L2Q5T890 1561 aa32.89■■■□□ 2.86
COL7A1-207ENST00000467985 TRHP20396 242 aaPredicted RBP32.84■■■□□ 2.85
COL7A1-207ENST00000467985 RUSC2Q8N2Y8 1516 aa32.83■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 319.5 ms