RNA–Protein interactions for RNA: ENST00000467957.1

YBX1-204, Transcript of Y-box binding protein 1, humanhuman

TSL 2

Gene YBX1, Length 770 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1-204ENST00000467957 NISCHQ9Y2I1 1504 aa45.62■■■■■ 4.89
YBX1-204ENST00000467957 CCDC180Q9P1Z9 1646 aa40.64■■■■■ 4.1
YBX1-204ENST00000467957 ABCC9O60706 1549 aa39.81■■■■□ 3.96
YBX1-204ENST00000467957 RB1CC1Q8TDY2 1594 aa38.29■■■■□ 3.72
YBX1-204ENST00000467957 NACADO15069 1562 aa38.24■■■■□ 3.71
YBX1-204ENST00000467957 DCAF8L2P0C7V8 631 aa38.06■■■■□ 3.68
YBX1-204ENST00000467957 MYO15BQ96JP2 1530 aa38.02■■■■□ 3.68
YBX1-204ENST00000467957 ZCCHC6Q5VYS8 1495 aaKnown RBP37.98■■■■□ 3.67
YBX1-204ENST00000467957 DCAF1Q9Y4B6 1507 aa37.8■■■■□ 3.64
YBX1-204ENST00000467957 UNC13AQ9UPW8 1703 aa37.41■■■■□ 3.58
YBX1-204ENST00000467957 PABPN1Q86U42 306 aaKnown RBP eCLIP37.16■■■■□ 3.54
YBX1-204ENST00000467957 BICRAQ9NZM4 1560 aa37.14■■■■□ 3.54
YBX1-204ENST00000467957 SCRIBQ14160 1630 aa36.99■■■■□ 3.51
YBX1-204ENST00000467957 SHROOM4Q9ULL8 1493 aa36.79■■■■□ 3.48
YBX1-204ENST00000467957 DNAJC5BQ9UF47 199 aa36.65■■■■□ 3.46
YBX1-204ENST00000467957 EIF4G1Q04637 1599 aaKnown RBP36.16■■■■□ 3.38
YBX1-204ENST00000467957 CC2D2AQ9P2K1 1620 aa36.04■■■■□ 3.36
YBX1-204ENST00000467957 CECR2Q9BXF3 1484 aa35.8■■■■□ 3.32
YBX1-204ENST00000467957 SMARCA4P51532 1647 aa35.42■■■■□ 3.26
YBX1-204ENST00000467957 BAZ1AQ9NRL2 1556 aaPredicted RBP35.38■■■■□ 3.25
YBX1-204ENST00000467957 NCAPD3P42695 1498 aa35.29■■■■□ 3.24
YBX1-204ENST00000467957 ATAD2BQ9ULI0 1458 aa35.27■■■■□ 3.24
YBX1-204ENST00000467957 SMARCA2P51531 1590 aa35.22■■■■□ 3.23
YBX1-204ENST00000467957 MROH2BQ7Z745 1585 aa35.14■■■■□ 3.22
YBX1-204ENST00000467957 PEG3Q9GZU2 1588 aa35.12■■■■□ 3.21
YBX1-204ENST00000467957 HMGXB3Q12766 1538 aa35.1■■■■□ 3.21
YBX1-204ENST00000467957 BAZ1BQ9UIG0 1483 aaKnown RBP34.95■■■■□ 3.19
YBX1-204ENST00000467957 WIZO95785 1651 aa34.75■■■■□ 3.15
YBX1-204ENST00000467957 RSF1Q96T23 1441 aaPredicted RBP34.71■■■■□ 3.15
YBX1-204ENST00000467957 NESP48681 1621 aa34.41■■■■□ 3.1
YBX1-204ENST00000467957 TOP2AP11388 1531 aaKnown RBP34.39■■■■□ 3.1
YBX1-204ENST00000467957 LAMC3Q9Y6N6 1575 aa34.37■■■■□ 3.09
YBX1-204ENST00000467957 ERCC6Q03468 1493 aa34.32■■■■□ 3.08
YBX1-204ENST00000467957 CADPSQ9ULU8 1353 aa34.23■■■■□ 3.07
YBX1-204ENST00000467957 PDS5BQ9NTI5 1447 aa34.13■■■■□ 3.05
YBX1-204ENST00000467957 CUX2O14529 1486 aa34.06■■■■□ 3.04
YBX1-204ENST00000467957 KIF21AQ7Z4S6 1674 aa34.02■■■■□ 3.04
YBX1-204ENST00000467957 CFTRP13569 1480 aa34.01■■■■□ 3.04
YBX1-204ENST00000467957 CCDC88BA6NC98 1476 aa33.98■■■■□ 3.03
YBX1-204ENST00000467957 THOC2Q8NI27 1593 aaKnown RBP33.96■■■■□ 3.03
YBX1-204ENST00000467957 FANCD2Q9BXW9 1451 aa33.82■■■■□ 3
YBX1-204ENST00000467957 CEP164Q9UPV0 1460 aa33.8■■■■□ 3
YBX1-204ENST00000467957 MRC2Q9UBG0 1479 aa33.77■■■■□ 3
YBX1-204ENST00000467957 PRDM2Q13029 1718 aa33.74■■■□□ 2.99
YBX1-204ENST00000467957 WDR62O43379 1518 aa33.69■■■□□ 2.98
YBX1-204ENST00000467957 SUPT5HO00267 1087 aaKnown RBP33.64■■■□□ 2.98
YBX1-204ENST00000467957 URB2Q14146 1524 aaKnown RBP33.49■■■□□ 2.95
YBX1-204ENST00000467957 ABCC8Q09428 1581 aa33.3■■■□□ 2.92
YBX1-204ENST00000467957 TOPBP1Q92547 1522 aa33.27■■■□□ 2.92
YBX1-204ENST00000467957 DNMBPQ6XZF7 1577 aa33.23■■■□□ 2.91
YBX1-204ENST00000467957 DNAJC5Q9H3Z4 198 aa33.15■■■□□ 2.9
YBX1-204ENST00000467957 IFT140Q96RY7 1462 aa33.1■■■□□ 2.89
YBX1-204ENST00000467957 POLA1P09884 1462 aaPredicted RBP32.98■■■□□ 2.87
YBX1-204ENST00000467957 CUX1P39880 1505 aa32.97■■■□□ 2.87
YBX1-204ENST00000467957 TARBP1Q13395 1621 aaKnown RBP32.94■■■□□ 2.86
YBX1-204ENST00000467957 ZNF608Q9ULD9 1512 aaPredicted RBP32.93■■■□□ 2.86
YBX1-204ENST00000467957 FGD5Q6ZNL6 1462 aa32.87■■■□□ 2.85
YBX1-204ENST00000467957 SOGA1O94964 1423 aa32.84■■■□□ 2.85
YBX1-204ENST00000467957 RAD54L2Q9Y4B4 1467 aa32.81■■■□□ 2.84
YBX1-204ENST00000467957 EIF4G3O43432 1585 aaKnown RBP32.81■■■□□ 2.84
YBX1-204ENST00000467957 AQRO60306 1485 aaKnown RBP eCLIP32.73■■■□□ 2.835e-13■■■■■ 35.9
YBX1-204ENST00000467957 WRNQ14191 1432 aaPredicted RBP eCLIP32.71■■■□□ 2.83
YBX1-204ENST00000467957 WDR97A6NE52 1622 aa32.71■■■□□ 2.83
YBX1-204ENST00000467957 BIVM-ERCC5R4GMW8 1640 aa32.68■■■□□ 2.82
YBX1-204ENST00000467957 TOP2BQ02880 1626 aa32.67■■■□□ 2.82
YBX1-204ENST00000467957 TDRD9Q8NDG6 1382 aaKnown RBP32.65■■■□□ 2.82
YBX1-204ENST00000467957 SYNJ1O43426 1573 aa32.63■■■□□ 2.81
YBX1-204ENST00000467957 OSCARQ8IYS5 282 aa32.6■■■□□ 2.81
YBX1-204ENST00000467957 ABCA10Q8WWZ4 1543 aa32.57■■■□□ 2.8
YBX1-204ENST00000467957 GRIN2BQ13224 1484 aa32.48■■■□□ 2.79
YBX1-204ENST00000467957 GAPVD1Q14C86 1478 aa32.47■■■□□ 2.79
YBX1-204ENST00000467957 ABCA5Q8WWZ7 1642 aa32.45■■■□□ 2.79
YBX1-204ENST00000467957 SNAPC4Q5SXM2 1469 aa32.43■■■□□ 2.78
YBX1-204ENST00000467957 CHD1O14646 1710 aa32.42■■■□□ 2.78
YBX1-204ENST00000467957 MAGI1Q96QZ7 1491 aaPredicted RBP32.42■■■□□ 2.78
YBX1-204ENST00000467957 PBRM1Q86U86 1689 aa32.4■■■□□ 2.78
YBX1-204ENST00000467957 FBLN2P98095 1184 aa32.32■■■□□ 2.76
YBX1-204ENST00000467957 SYNJ2O15056 1496 aa32.29■■■□□ 2.76
YBX1-204ENST00000467957 CHMP7Q8WUX9 453 aaPredicted RBP32.25■■■□□ 2.75
YBX1-204ENST00000467957 ERICH3Q5RHP9 1530 aa32.2■■■□□ 2.74
YBX1-204ENST00000467957 ADAMTS12P58397 1594 aa32.14■■■□□ 2.74
YBX1-204ENST00000467957 CLASP1Q7Z460 1538 aa32.1■■■□□ 2.73
YBX1-204ENST00000467957 FHAD1B1AJZ9 1412 aa32.09■■■□□ 2.73
YBX1-204ENST00000467957 RIMBP3CA6NJZ7 1639 aa32.09■■■□□ 2.73
YBX1-204ENST00000467957 RIMBP3BA6NNM3 1639 aa32.09■■■□□ 2.73
YBX1-204ENST00000467957 RIMBP3Q9UFD9 1639 aa32.09■■■□□ 2.73
YBX1-204ENST00000467957 ARHGEF11O15085 1522 aa32.07■■■□□ 2.72
YBX1-204ENST00000467957 GRIN2AQ12879 1464 aa32.06■■■□□ 2.72
YBX1-204ENST00000467957 KIF27Q86VH2 1401 aa32.05■■■□□ 2.72
YBX1-204ENST00000467957 NUP160Q12769 1436 aa31.94■■■□□ 2.7
YBX1-204ENST00000467957 IGF1RP08069 1367 aa31.94■■■□□ 2.7
YBX1-204ENST00000467957 TRIM41Q8WV44 630 aa31.92■■■□□ 2.7
YBX1-204ENST00000467957 CEP170Q5SW79 1584 aa31.9■■■□□ 2.7
YBX1-204ENST00000467957 CUL7Q14999 1698 aa31.87■■■□□ 2.69
YBX1-204ENST00000467957 ARAP1Q96P48 1450 aa31.8■■■□□ 2.68
YBX1-204ENST00000467957 CYB5RLQ6IPT4 315 aa31.75■■■□□ 2.67
YBX1-204ENST00000467957 CARMIL1Q5VZK9 1371 aa31.73■■■□□ 2.67
YBX1-204ENST00000467957 SHROOM2Q13796 1616 aa31.72■■■□□ 2.67
YBX1-204ENST00000467957 RUSC2Q8N2Y8 1516 aa31.69■■■□□ 2.66
YBX1-204ENST00000467957 ERCC6L2Q5T890 1561 aa31.6■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms